SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12147
Annotation
PREDICTED:_uncharacterized_protein_LOC106131092_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.493
 

Sequence

CDS
ATGTATCCGACTCAGCACGTGGGTGGCGCACCCATTGCGCAACCGCCTGCGACGCCTTTACCAAGAAGCGACGCGCCAGCTCCAGGACCCAGCAATGTAACCTCGGACACAAAGGACATTTCGGCTATCACAGTGGACTCACGAATTCCCGAATTTTGGACAGACCAGCCACGTGTCTGGTTCATTAGGGCTGAATCCGTCCTAAATCCACAAAAATGCAGTGATGATGCCAAATTCCAAGTACTTATTTCGAAATTGGGAAAGGCCCCTATACAACAAGTCACAGATATTCTCTGCAGGCCGCCTGATACTGGAAGGTATGAAACTTTAAAAGCACGCTTGTTAGATATTTATGAGGAATCTGAGAACCGTCAGGTGCAGAAACTGATTGGTGAGATGGAGCTCGGCGATCAAAAGCCCTCACAGCTTCTTCGCCGTATGCGTGACCTCGCCAGGGACAAAATACCTGATGACACACTCCGAATTTTATGGCAAGGCCATCTGCCCGCAGCTGTAAGAACCGTCCTGGCGATTACTGAGACTAAGGACATGGAGAAATTAGCTGCCGCTGCAGACAAGGTAATGGAGACGTTACAGCCGTCACAGTTATCGGTCGTCGAAGTCAAAGTACCAGCTCAAACGAGTGGTAACAAGGATATATTAACTGAGATAGCAAAGTTGAGCATCCGCATGAGGAACATGGAGCGATTTCAACCTAAATGTTGTTTTGGGCAAGAGAAACTGGATTTCTTAGGCTATGAGGTGTCGTCTAATGGCATTCGTCCACTAGATACAAAAATAAAAGCGATTCAGGAATTCCCTAAGCCAAAGACAGTAGAAGAGTTACGTAGATTCTTAGATAGACGTACGCGATGGCCCGAAGCGTTTCCGATAAAAGATATAACTGCGGAAACGGTTGCCAAAAACGTCTACGATGGTTGGATTTCACGTTTTGGATGCCCGTTAAGACTAACAACTGATCAAGGTCGTCAATTTGAGAGCGATTTATTCTCAAAGTTAATGGAGTTACTAGGTATTCGTAAAAACCGAACCACTCCATATCATCCTCAGTGCAACGGCGCCGTAGAACGATGGCACCGGTCACTGAAGGCAGCGTTAGCCGCTCGACTTAGTGATAGCGCGACCTCATGGTTAGATGAATTGTCAACCGTGTTGTTAGGTTTAAGAGCAGCCGTTAGGAGTGATAATGGTATCAGCGCAGCAGAAATGACTTATGCCCATGTACTAAGATTACCATCTGATTTTTATAGTCCACAATCCAAAGGATCAGTAGATGACTATACCTATGTCGAGAAATTGCGTGAGATTATATCCAGTTTTAAGCCAGCATCTATAGCGCAGTCAAATAAATCTATTTTTGTACATCCCGATTTAAAGACTTGCGAGTATGTATTTGTACGTGATGAAGTACATAAACCTTTAAAACCTGCATACAATGGTCCATACCGTGTATTAAAGAGAGGAACTAAAGTTTACACCGTACAACTACTTAATCGCAAGGCTAATACTTCCATAGACCGCTTAAAGCCTGCATATGTACTCCACGCAACCGACCCACTAGATACCCGCAGTAGCGCTTGCGCAGCGGATCCGCCCGACGCCAGCGTTGCTGACAATGCTCGTACGACACGGTGCGGCCGTATAGTTAGGAGGCCCGTACGTTTCAATGAGTAG
Protein
MYPTQHVGGAPIAQPPATPLPRSDAPAPGPSNVTSDTKDISAITVDSRIPEFWTDQPRVWFIRAESVLNPQKCSDDAKFQVLISKLGKAPIQQVTDILCRPPDTGRYETLKARLLDIYEESENRQVQKLIGEMELGDQKPSQLLRRMRDLARDKIPDDTLRILWQGHLPAAVRTVLAITETKDMEKLAAAADKVMETLQPSQLSVVEVKVPAQTSGNKDILTEIAKLSIRMRNMERFQPKCCFGQEKLDFLGYEVSSNGIRPLDTKIKAIQEFPKPKTVEELRRFLDRRTRWPEAFPIKDITAETVAKNVYDGWISRFGCPLRLTTDQGRQFESDLFSKLMELLGIRKNRTTPYHPQCNGAVERWHRSLKAALAARLSDSATSWLDELSTVLLGLRAAVRSDNGISAAEMTYAHVLRLPSDFYSPQSKGSVDDYTYVEKLREIISSFKPASIAQSNKSIFVHPDLKTCEYVFVRDEVHKPLKPAYNGPYRVLKRGTKVYTVQLLNRKANTSIDRLKPAYVLHATDPLDTRSSACAADPPDASVADNARTTRCGRIVRRPVRFNE

Summary

Pfam
PF00665   rve        + More
PF17917   RT_RNaseH
Interpro
IPR036397   RNaseH_sf        + More
IPR041373   RT_RNaseH       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
SUPFAM
SSF53098   SSF53098       
Gene 3D
ProteinModelPortal
PDB
3S3O     E-value=5.88241e-08,     Score=138

Ontologies

Topology

Length:
564
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00037
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00092
outside
1  -  564
 
 

Population Genetic Test Statistics

Pi
253.348283
Theta
25.298248
Tajima's D
-1.38414
CLR
1.434128
CSRT
0.0765461726913654
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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