Gene

KWMTBOMO12142

Annotation

Yokozuna_[Bombyx_mori]

Location

Bomo_Chr20(-):8277103-8281236      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.208

CDS

ATGCATTCCGATACCGAACAAGACTTTTATGCTGTTTCAAGATTCCCACGTGTCCTTGGTACACTTGATGGTACACACATTAGGATTCAGTCACCATGTTCTCAGATTGAAGAAGAATTTAGAAACCGAAAAGGTTACTTTTCCCTTAATGTCCAAGCTGTGTGCAGCAATGCAGATTTATTATTTATGAATGTGGTGGCTCGTTGGCCAGGTTCAGCTCATGATGCCACAATATTTAATAATTCAGACTTGCGAGCTCAGTGTGAAAATGGCTCATTTGGAAATAAGTGGTTACTTGGAGATAGTGCTTATCCCTTGAAGCCATATTTATTAACGCCACTAATTAACACACAGACACGGGGCCAACAGCTTTATAATGAAGCCCATATTCGAACAAGAAACTGCATTGAAAGATGTTTTGGAGTTTGGAAACGAAGATTCCCTGTTGTAGCCTTAACATTGCGCCTGAGCCTTCTAAGAGCGAATGCAGTGATTATAGCTACAGCTGTACTCCACAACATTTGTCGACTGAAGAAGCTTGATGATATATCACCAGAAGTAGAAATTCCTGAGGCAGATGTGTTACCTACAGAAAGTAGCACTGAGGAAACTTTTAAGGAAAAGGAATGCAAAGAAGCAATTGAAGATGGCATAACAGAGGAAATATTGAAGTCAGAAAAATTCAAAAAGAAAGACGCAAAAGCTAGAAGTTTGATAGTCAACTGCCTCTCAGACAAACACTTGGAATACGTCAGAAGCGCTACGAGTGCAAAAGAGATGATCGAAAACTTACGAAAAATATTCAAAAGAAAAAGTACGTTATCTGCGTTATACGTCAGGAAGAAATTATTAACCTTAAAATGTGACCCCAGTGTCGAACTGAGCGACCACTTCAACAATTTTGATATGTTAATAAGACAATTAGAAGAAACTGGAAGCACAGTAAATGAACAAGACAAGGTGTGCCACTTACTACTGACTATGCCTGACAGCTACAATACTACAATTGCCGCCTTAGAAACTACTAATGTGGAACTTACAACAGAGTATGTCAAAAGCAAATTGTTAGATGCAGAACTAAAAAACCAAAATAATTCAATAGAATCACAGGATGCACACAGCTTCCTCAGTTGCTTTAAATGTGGTAAAACTGGTCACAAAGCTATACAGTGCAGAACTGGACACTTAATGAGAGGACAGCATCGAGGCAAAATGGGCAACGTCGGATATTTCAACGGAAGTAACACTAGAGACTTCTATCGAGGCAACGGCAGAGACTTCAATCCAGGTAACGGCAGAGGCTTTAACCGAGGCAATCCCAGAGGCAACGTGAGAGGACAATCGAGGGGATCATCAAGGGACATCATACCCCAACAAGGAAAAAGTGCTTTAAGTGAGAGAAATCCATTTTCTTTTGTTGCCAGTGAAAAGGTACTATCTGTTGATGTGTATAATGAGGACATTAAGTTTATTATTGATTCAGGAGCATCTCAAAATTTAGTCATTGATAGTTATGAAAAGTACATGTCAAACATTGAATATTTAGAAACTAAAACTAAGATTTATGTTGCTAATGGTCAATATTTGTTTTCAAGTAAAAAAGGGATTTTAAATGTAAAATATAATAACTTACCTATTAAAATAGAAGCACTACTTGTCAAGGGGCTATCCCACAACTTATTATCTGTTAAAAAATTATTAGAGAAAGGAAATTCTGTCAGATTTCATAAAAATTCTGTATCAATTGCTAAAGGAAATAACATAATTTATGGTACCATGCTTAATAGTCTGTATGCAATCAATCTTACATTAAACTTAGAAAAATGTTATTCGATAAACAATGATAAAGATCTATGGCATAAAAGGTTAGGACATGCTAATAGAAAACACTTAAAATTATTGAAATTACCTATCTCAGAAAAACCATGTGGAATATGTGTAGAAGGAAAATCAACAAGATTACCATTCTCTACAACACCCAGGCCGAGATCAAAATATATAGGAGAACTCATACACACAGATATATCAGGACCAATAAATATTCCTACACTTACAAATGAGGTATATTTTCATACAATTATAGATGATTACACACATTTCTGTGAGGTATACTTATTACAAAGAAAAAGTGAGGCAACCGATAGGCTCATAGAATATGTTAATAGAATGGAAAGACAAATAGAATGTAAAGTCAAGAAAATCAGAAGTGATAATGGTGGTGAGTTTAAAAATGAAAAACTAAATAAATTTTGCAAAGATAAGGGAATAGTTCAACAGTTTACTTTGCCTTATAGCCCACAGTCAAACGGAGTTTCAGAACGCATGAACAGAAATATTTATAACAGAGCTCGAACTTTATTAATTGAATCTGGTTTACCAAAAACCTTATGGGGTGAAGCGGTGCGATGTGCTGTCTATCAAACCAATAGATGTCAATCGTATGCTATCAACTTTCAAACCCCAGCAGAGAAAATGTTTGGAAACAAAGACTTAACAAGACTTAGGATATTTGGATCAAAATCATGGGTTCATATCATACCAAAACAAGATAAACTTTTACAAAGAGCTAAAGAAATGAGACTCGTAGGATATAGCCCAAATGGATATCGTCTATGGGACCCTACAAGTAATAAAGTGATAGTGTCAAGAGATGTCAGAATTGATGAAACGCAATTAAACTACAAGGAAACTGAAGAAAAGCATAACATAAAAGGAGAAACGTACTATGAAGATGAATTAATACAAAATGACGATACTGAGAAGGACACAGAAGCTGACCAAGAGACAAGAATACCTAATGAGAATGATGAAAACATGCAACATGATAGAATACCTGATAAAACAAATAAAGAAGTATCAAAGAATAATCAAGATGATGAAGAAGAAAATGTAAAATTGAATAAAAAAGGTAGAATAAATATACAGAAATATATAACAAGATCAGGAAGAGAAATTCGCAAACCAAAAAACTTAGAAAAATATGATCTAAATATAGCATACTGTCTTTTATCGGGAGACCCACAAGAATTTGAAGATGCAATTCATAACAAAGACTGGGAAAAAGCAATAAAGACAATTAAATTCACAAGTGAAATTAGAGACATGGGAAGAAGCTACATTACCAATGGGAAGTAA

Protein

MHSDTEQDFYAVSRFPRVLGTLDGTHIRIQSPCSQIEEEFRNRKGYFSLNVQAVCSNADLLFMNVVARWPGSAHDATIFNNSDLRAQCENGSFGNKWLLGDSAYPLKPYLLTPLINTQTRGQQLYNEAHIRTRNCIERCFGVWKRRFPVVALTLRLSLLRANAVIIATAVLHNICRLKKLDDISPEVEIPEADVLPTESSTEETFKEKECKEAIEDGITEEILKSEKFKKKDAKARSLIVNCLSDKHLEYVRSATSAKEMIENLRKIFKRKSTLSALYVRKKLLTLKCDPSVELSDHFNNFDMLIRQLEETGSTVNEQDKVCHLLLTMPDSYNTTIAALETTNVELTTEYVKSKLLDAELKNQNNSIESQDAHSFLSCFKCGKTGHKAIQCRTGHLMRGQHRGKMGNVGYFNGSNTRDFYRGNGRDFNPGNGRGFNRGNPRGNVRGQSRGSSRDIIPQQGKSALSERNPFSFVASEKVLSVDVYNEDIKFIIDSGASQNLVIDSYEKYMSNIEYLETKTKIYVANGQYLFSSKKGILNVKYNNLPIKIEALLVKGLSHNLLSVKKLLEKGNSVRFHKNSVSIAKGNNIIYGTMLNSLYAINLTLNLEKCYSINNDKDLWHKRLGHANRKHLKLLKLPISEKPCGICVEGKSTRLPFSTTPRPRSKYIGELIHTDISGPINIPTLTNEVYFHTIIDDYTHFCEVYLLQRKSEATDRLIEYVNRMERQIECKVKKIRSDNGGEFKNEKLNKFCKDKGIVQQFTLPYSPQSNGVSERMNRNIYNRARTLLIESGLPKTLWGEAVRCAVYQTNRCQSYAINFQTPAEKMFGNKDLTRLRIFGSKSWVHIIPKQDKLLQRAKEMRLVGYSPNGYRLWDPTSNKVIVSRDVRIDETQLNYKETEEKHNIKGETYYEDELIQNDDTEKDTEADQETRIPNENDENMQHDRIPDKTNKEVSKNNQDDEEENVKLNKKGRINIQKYITRSGREIRKPKNLEKYDLNIAYCLLSGDPQEFEDAIHNKDWEKAIKTIKFTSEIRDMGRSYITNGK

Uniprot

O96968   A0A0A9XG27   A0A146L6N5   A0A0A9WQA3   A0A0A9ZCB8   A0A0A9WLY1   + More
A0A1B6DFK3   A0A0J7KI47   A0A1Y1L115   A0A1Y1MP14   A0A182GSW5   A0A1Y1MQF0   J9KJ72   A0A034VP82   A0A0J7N374   A0A023F102   A0A146LT61   A0A0P6ITU5   A0A1X7U495   A0A0J7K689   A0A0V0G477   A0A1W7R6H7   A0A0K8U6S2   Q9ZRJ0   A0A0A1XLZ7   H9J123  

Pubmed

10333565    25401762    26823975    28004739    26483478    25348373    + More
25474469    26999592    8624443    25830018    19121390   

EMBL

AB014676    BAA74713.1    GBHO01027564    JAG16040.1    GDHC01015802    JAQ02827.1    + More
GBHO01034936    JAG08668.1    GBHO01002616    JAG40988.1    GBHO01035173    JAG08431.1    GEDC01012841    GEDC01000503    JAS24457.1    JAS36795.1    LBMM01007046    KMQ90088.1    GEZM01072005    JAV65635.1    GEZM01028916    JAV86195.1    JXUM01085595    KQ563513    KXJ73717.1    JAV86196.1    ABLF02041793    GAKP01015342    JAC43610.1    LBMM01010924    KMQ87150.1    GBBI01004033    JAC14679.1    GDHC01007678    JAQ10951.1    GDUN01000694    JAN95225.1    LBMM01012772    KMQ86003.1    GECL01003258    JAP02866.1    GEHC01000879    JAV46766.1    GDHF01030254    JAI22060.1    D83003    BAA11674.1    GBXI01002679    JAD11613.1    BABH01010608   

Proteomes

UP000036403    UP000069940    UP000249989    UP000007819    UP000007879    UP000005204    + More

PRIDE

O96968    H9J123   

Pfam

PF00665   rve        + More
PF07727   RVT_2
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF13961   DUF4219

Interpro

IPR036397   RNaseH_sf        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       

Gene 3D

3.30.420.10    

ProteinModelPortal

O96968   A0A0A9XG27   A0A146L6N5   A0A0A9WQA3   A0A0A9ZCB8   A0A0A9WLY1   + More
A0A1B6DFK3   A0A0J7KI47   A0A1Y1L115   A0A1Y1MP14   A0A182GSW5   A0A1Y1MQF0   J9KJ72   A0A034VP82   A0A0J7N374   A0A023F102   A0A146LT61   A0A0P6ITU5   A0A1X7U495   A0A0J7K689   A0A0V0G477   A0A1W7R6H7   A0A0K8U6S2   Q9ZRJ0   A0A0A1XLZ7   H9J123  

PDB

5UOQ     E-value=4.92891e-08,     Score=141

KEGG

101742499    K23222 nuclease HARBI1 [EC:3.1.-.-] | (RefSeq) uncharacterized LOC101742499

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0016021   GO:0019001   GO:0031683   GO:0007165   GO:0005525   GO:0008033   GO:0016787  

PANTHER

PTHR11439  

Length:

1044

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.00239

Exp number, first 60 AAs:

0.03724

Total prob of N-in:

0.04510

outside

1  -  1044

 

 

Pi

297.791392

Theta

175.864807

Tajima's D

2.044731

CLR

12.270604

CSRT

0.886555672216389

Interpretation

Uncertain