Gene

KWMTBOMO12140

Pre Gene Modal

BGIBMGA008553

Annotation

PREDICTED:_uncharacterized_protein_LOC100907913_[Metaseiulus_occidentalis]

Location

Bomo_Chr20(-):8269995-8270816      View in EpiBrowser

Full name

ATP-dependent DNA helicase      

Location in the cell

Cytoplasmic   Reliability : 2.102 Nuclear   Reliability : 1.405

CDS

ATGCAGATACATCGGTTGCGTTACGATGGCAGCTATGGTATCATCGGACAAGTCATTAATGTACCCGTGGATGTAGACACAATGGTGCAGCAGCTACCTCGTCAAGTGCAGCAGCTACCTCGTCAATTGGACGATGATCAGGCGTTCAATGTTAACATAAAGAAGAACATGATACATAAATCTACGTATCTAAGCGGCGTGGTCAAAAAGTCAGTGCTAAAAGCTTGGCTACAATTCTTACTAGGTCAACCATTGTATAAGCATTACAAAATTACAGTAAACTGGGATTCATTCCAACCTAACACAACCAGTTGTGTGACAGCCAACGCCACCGGTGATGATCCGATCGAGCATCTACAGTGTGACGACAGAAGTGCACCGGAGTCGGATGTTCTGCTTGCAAGGCAGCACACTATGCTTTGGAATGAAGAACATTGTCTTGACATTGCTCCGGGCCAGCAATCAACACCGCTGAACATTATTTACGACGTGTATGCCGAAGAACTATCGTTCCCTTTGATATACTACGGTACTGGCAGGCAGTTTAATTCAGATGTGCGCGTTACCCCATTCATGATCGCAACAAACGAGATAAGAAGAAGCGATCGCCGCGGTGTCACACCCGAGCACGTTTTTACATGGCCATGA

Protein

MQIHRLRYDGSYGIIGQVINVPVDVDTMVQQLPRQVQQLPRQLDDDQAFNVNIKKNMIHKSTYLSGVVKKSVLKAWLQFLLGQPLYKHYKITVNWDSFQPNTTSCVTANATGDDPIEHLQCDDRSAPESDVLLARQHTMLWNEEHCLDIAPGQQSTPLNIIYDVYAEELSFPLIYYGTGRQFNSDVRVTPFMIATNEIRRSDRRGVTPEHVFTWP

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Cofactor

Mg(2+)

Similarity

Belongs to the helicase family.

Uniprot

H9JGA6   J9M8Z2   A0A2W1BWM2   H9J7F3   H9JWT3   J9JYX1   + More
A0A0A9Y368   B0XHK1   B0WS82   B0WQS5   B0WBF3   B0WHR0   B0X2H4   B0X370   H9IWZ3   J9M0A7   J9M7J3   K7JIV9   A0A212FGN1   H9J482   J9K9R0   A0A1W7R6D7   A0A0A9YHW4   A0A147BET4   K7JZX4   K7JK29   B0XLK1   B0W9W4   B0X8F9   B0W7Q6   B0WJB6   B0XKN7   B0X3H8   B0XE87   A0A0C9R1Z9   A0A0C9Q9F9   B0XBP3   A0A2A4JVG9   B7P496   A0A226EC03   A0A226F5N4   A0A226EJR0   A0A226EDF0   A0A226E9N6   A0A226EB64   A0A226DHK2   A0A226D2F9   A0A226DGJ8   A0A226DVC3   A0A226ED60   A0A1Y1NKE2   A0A226DCW9   J9LVV6   A0A183ELP2   A0A2H9T4X5   A0A183DXC1   A0A1C7MXZ9   A0A3M7QQ64   A0A0B7NWV4   A0A1E7YXA2   A0A0B7NFP9   A0A226D1Q1   A0A3M7R7E7   A0A226F1P1   A0A226D8L9   A0A0B7MTX6   A0A183DRG7  

EC Number

3.6.4.12

Pubmed

19121390    28756777    25401762    20075255    22118469    29652888    + More
28004739    29150518    30375419   

EMBL

BABH01002386    ABLF02010071    KZ149968    PZC76143.1    BABH01013754    BABH01018610    + More
BABH01018611    BABH01018612    BABH01018613    BABH01018614    ABLF02009660    ABLF02060474    GBHO01018051    JAG25553.1    DS233163    EDS28452.1    DS232066    EDS33709.1    DS232044    EDS32999.1    DS231879    EDS42392.1    DS231939    EDS27927.1    DS232289    EDS39197.1    DS232310    EDS39572.1    BABH01021151    BABH01021152    ABLF02013052    ABLF02013053    ABLF02014271    ABLF02042290    ABLF02010848    ABLF02010851    ABLF02010852    ABLF02024887    AAZX01004863    AGBW02008637    OWR52892.1    BABH01032532    BABH01032533    BABH01032534    ABLF02018835    ABLF02018837    ABLF02018838    GEHC01000952    JAV46693.1    GBHO01010962    JAG32642.1    GEGO01006084    JAR89320.1    AAZX01023900    AAZX01023311    DS234515    EDS34328.1    DS231866    EDS40531.1    DS232488    EDS42495.1    DS231855    EDS38200.1    DS231958    EDS29051.1    DS233927    EDS32356.1    DS232315    EDS39870.1    DS232811    EDS45920.1    GBYB01000886    JAG70653.1    GBYB01011013    JAG80780.1    DS232646    EDS44392.1    NWSH01000553    PCG75688.1    ABJB010788417    DS634450    EEC01418.1    LNIX01000005    OXA54226.1    LNIX01000001    OXA64511.1    LNIX01000003    OXA57943.1    OXA55077.1    OXA54149.1    OXA54773.1    LNIX01000020    OXA44081.1    LNIX01000040    OXA39240.1    LNIX01000023    OXA43316.1    LNIX01000011    OXA48651.1    LNIX01000004    OXA55350.1    GEZM01005450    JAV96167.1    OXA43039.1    ABLF02010891    ABLF02012574    ABLF02012575    ABLF02012576    ABLF02012577    ABLF02057984    UYRT01093725    VDN39125.1    NSIT01000220    PJE78258.1    UYRT01080144    VDN22144.1    LUGH01001109    OBZ81651.1    REGN01005504    RNA13125.1    LN734054    CEP19589.1    MAYS01000442    OFC61133.1    LN732935    CEP16237.1    LNIX01000041    OXA39103.1    REGN01004028    RNA19532.1    OXA63699.1    LNIX01000030    OXA41097.1    LN719792    CEP08567.1    UYRT01078476    VDN18611.1   

Proteomes

UP000005204    UP000007819    UP000002320    UP000002358    UP000007151    UP000218220    + More
UP000001555    UP000198287    UP000050760    UP000093000    UP000276133    UP000054107   

PRIDE

H9JGA6    H9J7F3    H9JWT3    H9IWZ3    H9J482   

Pfam

PF14214   Helitron_like_N        + More
PF05970   PIF1
PF16563   P66_CC
PF13359   DDE_Tnp_4
PF18358   Tudor_4
PF18359   TUDOR_5
PF02689   Herpes_Helicase
PF02801   Ketoacyl-synt_C
PF00443   UCH
PF08659   KR
PF14765   PS-DH
PF00109   ketoacyl-synt
PF16197   KAsynt_C_assoc
PF00107   ADH_zinc_N
PF00698   Acyl_transf_1
PF13538   UvrD_C_2
PF02902   Peptidase_C48

Interpro

IPR025476   Helitron_helicase-like        + More
IPR010285   DNA_helicase_pif1-like       
IPR027417   P-loop_NTPase       
IPR032346   P66_CC       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR009072   Histone-fold       
IPR000558   Histone_H2B       
IPR013087   Znf_C2H2_type       
IPR027806   HARBI1_dom       
IPR003593   AAA+_ATPase       
IPR003323   OTU_dom       
IPR041292   Tudor_4       
IPR041291   TUDOR_5       
IPR003840   DNA_helicase       
IPR000014   PAS       
IPR035965   PAS-like_dom_sf       
IPR016039   Thiolase-like       
IPR001394   Peptidase_C19_UCH       
IPR014030   Ketoacyl_synth_N       
IPR020843   PKS_ER       
IPR013968   PKS_KR       
IPR002364   Quin_OxRdtase/zeta-crystal_CS       
IPR020801   PKS_acyl_transferase       
IPR038765   Papain-like_cys_pep_sf       
IPR029063   SAM-dependent_MTases       
IPR020841   PKS_Beta-ketoAc_synthase_dom       
IPR001227   Ac_transferase_dom_sf       
IPR020807   PKS_dehydratase       
IPR036736   ACP-like_sf       
IPR014031   Ketoacyl_synth_C       
IPR016035   Acyl_Trfase/lysoPLipase       
IPR028889   USP_dom       
IPR013149   ADH_C       
IPR032821   KAsynt_C_assoc       
IPR011032   GroES-like_sf       
IPR042104   PKS_dehydratase_sf       
IPR014043   Acyl_transferase       
IPR036291   NAD(P)-bd_dom_sf       
IPR027785   UvrD-like_helicase_C       
IPR003653   Peptidase_C48_C       

SUPFAM

SSF52540   SSF52540        + More
SSF56219   SSF56219       
SSF47113   SSF47113       
SSF55785   SSF55785       
SSF50129   SSF50129       
SSF53335   SSF53335       
SSF54001   SSF54001       
SSF47336   SSF47336       
SSF53901   SSF53901       
SSF52151   SSF52151       
SSF51735   SSF51735       

Gene 3D

3.60.10.10     1.10.20.10     1.10.1200.10     3.10.129.110     3.40.366.10     3.40.47.10    

CDD

cd00130  PAS

ProteinModelPortal

H9JGA6   J9M8Z2   A0A2W1BWM2   H9J7F3   H9JWT3   J9JYX1   + More
A0A0A9Y368   B0XHK1   B0WS82   B0WQS5   B0WBF3   B0WHR0   B0X2H4   B0X370   H9IWZ3   J9M0A7   J9M7J3   K7JIV9   A0A212FGN1   H9J482   J9K9R0   A0A1W7R6D7   A0A0A9YHW4   A0A147BET4   K7JZX4   K7JK29   B0XLK1   B0W9W4   B0X8F9   B0W7Q6   B0WJB6   B0XKN7   B0X3H8   B0XE87   A0A0C9R1Z9   A0A0C9Q9F9   B0XBP3   A0A2A4JVG9   B7P496   A0A226EC03   A0A226F5N4   A0A226EJR0   A0A226EDF0   A0A226E9N6   A0A226EB64   A0A226DHK2   A0A226D2F9   A0A226DGJ8   A0A226DVC3   A0A226ED60   A0A1Y1NKE2   A0A226DCW9   J9LVV6   A0A183ELP2   A0A2H9T4X5   A0A183DXC1   A0A1C7MXZ9   A0A3M7QQ64   A0A0B7NWV4   A0A1E7YXA2   A0A0B7NFP9   A0A226D1Q1   A0A3M7R7E7   A0A226F1P1   A0A226D8L9   A0A0B7MTX6   A0A183DRG7  

KEGG

NA   

GO

GO:0003678   GO:0000723   GO:0006310   GO:0006281   GO:0005524   GO:0000122   GO:0016874   GO:0046982   GO:0003677   GO:0000786   GO:0003676   GO:0016021   GO:0008270   GO:0016740   GO:0016579   GO:0016491   GO:0036459   GO:0004386   GO:0008234  

Length:

215

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0594

Exp number, first 60 AAs:

0.0091

Total prob of N-in:

0.14344

outside

1  -  215

 

 

Pi

253.111315

Theta

213.591543

Tajima's D

0.570629

CLR

0

CSRT

0.539473026348683

Interpretation

Uncertain