Silkworm Genome Informatics Database

Gene

KWMTBOMO12136

Pre Gene Modal

BGIBMGA000194

Annotation

Uncharacterized_protein_OBRU01_23417?_partial_[Operophtera_brumata]

Location

Bomo_Chr20(+):8204887-8205725 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.331 Mitochondrial Reliability : 1.549

CDS

ATGGATGTTGATGATGACAGAGACCAGTTGCATGTAGACGCTCAAAGAAATATAACAGTTGGCAATCATATAGTGAGCATAATATTCACCATCCACAATGTTTGTAGACAAGAAGTGAAGAACACCAGCACAAACATGATCAAGAAGACAGCCACCACTTCATTTAACATCCATTTCAGAGGAAATGACTATTTAGTTGATAACAAATTCATCAAGGACAAATGGGTCGAAATCCTCAAAGGGAACGGGCTAGAGTATAAAGATTTTTCTACCACTGATAACACAAATTGGTATGGGACAATGGGACCATATGTTGACATGTTTGCTGCTTATGCATTAAGGACCAACGAACTACGATTAGGCCATAATAACATGCCCATTACCAAGCAGGACGGGGTACACAAGAGTTTTCCAGTATCCAAATACGGTCTCTCTGGAGCTCACCATGTATTGCTAGAGGGCACTTCATTCCCACCTGAAAGGAGATCATCAATAGTTCAGAGTTTGGGAGCAATGACAGCATGGCTATGTATGCTAAGAAGTGATGGTATCTATAGAAAGAAATATGCAGCCGCAGTGAAGAGGGCAATGTCCCATGTACCATGTATTGATGATTTAATTCACTCACTAAAACAACAAAACAAGCATCTGAACTTTCAACTGTAA

Protein

MDVDDDRDQLHVDAQRNITVGNHIVSIIFTIHNVCRQEVKNTSTNMIKKTATTSFNIHFRGNDYLVDNKFIKDKWVEILKGNGLEYKDFSTTDNTNWYGTMGPYVDMFAAYALRTNELRLGHNNMPITKQDGVHKSFPVSKYGLSGAHHVLLEGTSFPPERRSSIVQSLGAMTAWLCMLRSDGIYRKKYAAAVKRAMSHVPCIDDLIHSLKQQNKHLNFQL

Uniprot

H9ISG7 A0A3G1PW31 A0A1Y1LNL2 A0A0L7KP29 A0A3G1PW23 A0A1Y1K087 + More
A0A3G3BTH0 A0A1L3KKK4 A0A2S2NYM5 A0A1Z2RTA4 A0A1A9ZPV6 A0A343FNE4 A0A182NX96 A0A182NX97 W8BV85 A0A1L3KKL4 A0A2R7WAG4 A0A3S3PGI8

Pubmed

19121390 30324905 28004739 26227816 27880757 28637756 + More
24495485

EMBL

BABH01040682 MG972991 AVR52570.1 GEZM01050999 JAV75213.1 JTDY01007624 + More
KOB65068.1 MG972986 AVR52565.1 GEZM01098390 JAV53898.1 MK026599 AYP67576.1 KX883861 APG77883.1 GGMR01009702 MBY22321.1 MF176328 ASA47423.1 KX670393 ASR92127.1 GAMC01001305 JAC05251.1 KX883871 APG77893.1 KK854536 PTY16656.1 NCKU01011111 RWS00554.1

Proteomes

UP000005204 UP000037510 UP000092445 UP000075884 UP000285301

PRIDE

H9ISG7

Pfam

PF13976 gag_pre-integrs + More
PF00665 rve

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001584   Integrase_cat-core
IPR039537   Retrotran_Ty1/copia-like
IPR025724   GAG-pre-integrase_dom
IPR036397   RNaseH_sf

SUPFAM

SSF53098 SSF53098

Gene 3D

3.30.420.10

ProteinModelPortal

H9ISG7 A0A3G1PW31 A0A1Y1LNL2 A0A0L7KP29 A0A3G1PW23 A0A1Y1K087 + More
A0A3G3BTH0 A0A1L3KKK4 A0A2S2NYM5 A0A1Z2RTA4 A0A1A9ZPV6 A0A343FNE4 A0A182NX96 A0A182NX97 W8BV85 A0A1L3KKL4 A0A2R7WAG4 A0A3S3PGI8

KEGG

NA

GO

GO:0019013 GO:0003676 GO:0015074 GO:0000943

PANTHER

PTHR11439

Length:

221

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.650939999999999

Exp number, first 60 AAs:

0.40444

Total prob of N-in:

0.12451

outside

1 - 221

Pi

161.337896

Theta

204.1694

Tajima's D

-0.664591

CLR

0

CSRT

0.203189840507975

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics