Gene

KWMTBOMO12133

Pre Gene Modal

BGIBMGA005185

Annotation

copia_protein_[Lasius_niger]

Location

Bomo_Chr20(+):8157647-8159386      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.614

CDS

ATGGAAGTAAATAATACCACTCATGTGATGAAACTGGAAGGTGCGAAAAATTGGAATGTTTGGAAGTTTCAAATAACAGTATTGTTGAAAGGTCAAGGATGGTTGGACGTTGTTGAAGGGCGGACGGTAAAACCAGAAGACGCTGTTGCAAGAGCTGCCTGGGAAGTAAAGGATGCTAAGGCTCAATCATTGATAGTCACCAGGATGTCTGAGGATGTCATGCTGCATATCATAACTTGTACATCTTCTGCTGAAATGTGGCAAAAGCTGTTATGTGTCTACGAACAAAAGTCGGAAACCAGCATTCACATTATACAGCAACGTTTCTTTCAATATAAATATGAGAAAGGAGTTGATATGTCGGTGTTTATATCTAAAATCCAAGAAATGCAGAATGAATATAAACATTTTATATCGGCATGGGAGTCCGCACCCGATAATAAACAAACATTTGATAATTTGGTGGCAAGGCTATTAGTAGAAGAGGAAAGGTTGAAGGAAAAGATTGAAGAAAACCAGGAGACGACGTCAGCGTTCGTAGCCAAGAGAAATGCTAAGTGTTTTAAATGTGGCAAACCGGGACATTACCAGTCAGAGTGTCGAAATAATAGAGACAATGAGAAAAACGTGGACTTTAATAAGTGCTTTTATTGTGGTAAACCGGGACATGTTAAGGCGCAGTGTCGTTATAGAAAGCTAAAGGACAATAAGAAAATGAGTAATGCGTTCGTTGTGTGTAACTCAGAAGACGAAAAATATGAAAAATCAAAGTGGCTAGTTGATTCAGGGGCTAGCGAACATATGTGCTTTGATAGTGAGCATGTAAATGTAGCTAAAGTAGTAAAGAATGACTTATATAAATGGCATCAGAAGTTAGCACATCAGAACTTTGATCACGTAAAGAAAGTGTTGGCGAAAAACAACATTGTTGTGAAACAAACCAATGTGCCACAATGTGAAAGCTGCTTAAAAGGAAAAATACATAGGCTACCATTTATGAAAAGCGATAGTGTAAGCACTAGGACATGCGAATTAATACATGGAGACACATGTGGACCCATGGAAGAAGAGTCCATTGGTGGTGAGAACACATATTTCAAAAAAAAAAGGCAGAATGCTGATTTGGAAAGAAAAAAGCTGATGATTGAGATATTAAACCTCAAAAAAGAGCATGAACTTCGGATGCAGATTCTAAAAGCAAAACAGTGGAGACTAGAACAACATTAG

Protein

MEVNNTTHVMKLEGAKNWNVWKFQITVLLKGQGWLDVVEGRTVKPEDAVARAAWEVKDAKAQSLIVTRMSEDVMLHIITCTSSAEMWQKLLCVYEQKSETSIHIIQQRFFQYKYEKGVDMSVFISKIQEMQNEYKHFISAWESAPDNKQTFDNLVARLLVEEERLKEKIEENQETTSAFVAKRNAKCFKCGKPGHYQSECRNNRDNEKNVDFNKCFYCGKPGHVKAQCRYRKLKDNKKMSNAFVVCNSEDEKYEKSKWLVDSGASEHMCFDSEHVNVAKVVKNDLYKWHQKLAHQNFDHVKKVLAKNNIVVKQTNVPQCESCLKGKIHRLPFMKSDSVSTRTCELIHGDTCGPMEEESIGGENTYFKKKRQNADLERKKLMIEILNLKKEHELRMQILKAKQWRLEQH

Uniprot

A0A2A4JP38   A0A2A4JBE6   A0A1Y1LCN3   A0A2R7X964   A0A2R7W1Y3   A0A1Y1K3Y8   + More
A0A1Y1K1A3   X1XSG1   A0A1Y1NEM6   A0A2S2P896   J9LCG1   A0A151II00   X1XN05   X1WXE3   A0A1Y1L0K1   X1WMK8   A0A1Y1KZM0   A0A2J7QWT7   A0A0J7K689   V5FYN4   X1X3B7   X1WT66   X1WZ36   A0A0J7K717   A0A151J9U8   X1WMG8   A0A3L8DP62   X1XQX4   A0A0P6CUX5   A0A0A9XEU3   A0A1Y1N4J3   A0A226DW10   A0A226DUK4   A0A0J7N723   A0A151IWP6   A0A1Y1N6B6   A0A0J7KDE2   A0A0P6CCJ8   A0A195F4T3   A0A0A9XY62   K7J7F1   A0A195FFU8   A0A0A9Y466   K7JGG9   K7JAW3   X1X2T1   A0A0J7KAF6   K7J987   A0A0J7N8C0   A0A1B6FK59   A0A1Y1K2V0   A0A151ITN2   A0A0J7NDW8   A0A085LL10   A0A1Y1LRT7   A0A0V0ULL1  

Pubmed

28004739    30249741    25401762    20075255    24929829   

EMBL

NWSH01000988    PCG73213.1    NWSH01002023    PCG69395.1    GEZM01063091    JAV69316.1    + More
KK863047    PTY28326.1    KK854253    PTY13757.1    GEZM01096003    JAV55208.1    GEZM01096000    JAV55213.1    ABLF02042028    GEZM01005616    JAV96038.1    GGMR01012789    MBY25408.1    ABLF02020242    ABLF02020246    ABLF02042026    KQ977592    KYN01654.1    ABLF02041733    ABLF02060404    ABLF02007537    ABLF02066133    GEZM01073374    JAV65136.1    ABLF02066512    JAV65135.1    NEVH01009420    PNF33053.1    LBMM01012772    KMQ86003.1    GALX01005676    JAB62790.1    ABLF02042030    ABLF02016448    ABLF02056079    ABLF02056084    LBMM01012696    KMQ86054.1    KQ979396    KYN21742.1    ABLF02057951    QOIP01000006    RLU22076.1    GDIP01002833    JAN00883.1    GBHO01024362    JAG19242.1    GEZM01016434    JAV91276.1    LNIX01000011    OXA48994.1    OXA48899.1    LBMM01008978    KMQ88490.1    KQ980862    KYN12127.1    GEZM01013586    GEZM01013585    JAV92450.1    LBMM01008998    KMQ88473.1    GDIP01002579    JAN01137.1    KQ981826    KYN35089.1    GBHO01019278    JAG24326.1    AAZX01012276    KQ981617    KYN39263.1    GBHO01019284    JAG24320.1    AAZX01000214    AAZX01007161    AAZX01023229    ABLF02003699    ABLF02003700    ABLF02007662    ABLF02007663    ABLF02019401    ABLF02049974    ABLF02050034    LBMM01010759    KMQ87259.1    AAZX01006867    LBMM01008433    KMQ88885.1    GECZ01019212    JAS50557.1    GEZM01098859    JAV53706.1    KQ981003    KYN10396.1    LBMM01006309    KMQ90715.1    KL363445    KFD45656.1    GEZM01048830    JAV76369.1    JYDK01000940    JYDK01000790    KRX51539.1    KRX53067.1   

Proteomes

UP000218220    UP000007819    UP000078542    UP000235965    UP000036403    UP000078492    + More
UP000279307    UP000198287    UP000078541    UP000002358    UP000054673   

Pfam

PF00098   zf-CCHC        + More
PF00665   rve
PF07727   RVT_2
PF13976   gag_pre-integrs
PF13961   DUF4219
PF00078   RVT_1
PF14244   Retrotran_gag_3

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR025314   DUF4219       
IPR000477   RT_dom       
IPR029472   Copia-like_N       

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A2A4JP38   A0A2A4JBE6   A0A1Y1LCN3   A0A2R7X964   A0A2R7W1Y3   A0A1Y1K3Y8   + More
A0A1Y1K1A3   X1XSG1   A0A1Y1NEM6   A0A2S2P896   J9LCG1   A0A151II00   X1XN05   X1WXE3   A0A1Y1L0K1   X1WMK8   A0A1Y1KZM0   A0A2J7QWT7   A0A0J7K689   V5FYN4   X1X3B7   X1WT66   X1WZ36   A0A0J7K717   A0A151J9U8   X1WMG8   A0A3L8DP62   X1XQX4   A0A0P6CUX5   A0A0A9XEU3   A0A1Y1N4J3   A0A226DW10   A0A226DUK4   A0A0J7N723   A0A151IWP6   A0A1Y1N6B6   A0A0J7KDE2   A0A0P6CCJ8   A0A195F4T3   A0A0A9XY62   K7J7F1   A0A195FFU8   A0A0A9Y466   K7JGG9   K7JAW3   X1X2T1   A0A0J7KAF6   K7J987   A0A0J7N8C0   A0A1B6FK59   A0A1Y1K2V0   A0A151ITN2   A0A0J7NDW8   A0A085LL10   A0A1Y1LRT7   A0A0V0ULL1  

PDB

5A9E     E-value=0.000108852,     Score=108

KEGG

101741159    no KO assigned | (RefSeq) uncharacterized LOC101741159

GO

GO:0008270   GO:0003676   GO:0015074   GO:0000943   GO:0016021   GO:0005488   GO:0019001   GO:0031683   GO:0007165   GO:0005525   GO:0008033   GO:0016787  

PANTHER

PTHR11439  

Length:

408

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00438

Exp number, first 60 AAs:

0.00356

Total prob of N-in:

0.02264

outside

1  -  408

 

 

Pi

137.219215

Theta

158.444921

Tajima's D

-0.418835

CLR

0.594621

CSRT

0.255887205639718

Interpretation

Uncertain