SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12129
Annotation
PREDICTED:_uncharacterized_protein_LOC105394433_isoform_X1_[Plutella_xylostella]
Location in the cell
Nuclear   Reliability : 1.583
 

Sequence

CDS
ATGTCCAATACTAGCCTTGTGGCTTTGATTGATGAAGGGATTGTTCCCTTTCACATAGACAGGCTCGTAGGACGAGACAATTATGCAAGTTGGAAATTCGCCGTGGAGGCTTATTTTAAACTAGAAGATCTATGGGACTGTGTCTATGGAACCAACGAGGATGAAAAGAAAGAAGTAAAGGCAAAGTCTAAGCTGGTACTCCTACTAGATCCTGTCAACTACGTGCATGTACAGAGTGCAAATACATGTAAAGAAGTCTGGGACAGTTTACAACAAGCTTTTGATGACAGCGGGTTGTACAGAAGAGTAGCCTTGTTAAGAGATCTCATCACAACTACATTGGACAGCTCACGAACCGTAGACGACTATGTGAACAAGATCATGTTAACTGCTCACAAACTCAGGAATATAAAGTTTGAGATTGATGATGAGTGGCTCGGTACACTCATGCTAGCTGGCTTACCTGAAACATATAAGTCAATGATAATGGGTCTGGAGAGTTCAGGAGTAAAGATTAGCGCAGATTCCATTAAAACGAAGCTCCTGCAGGAAGTTCAATGCTCAGAAAGCACAGCGTTCTTCACTAGGAAAGTAGCCAGTCAAAGGAATACTGCTAAGGTAACACGACCTGACATCACATTTGCAGTGAATAAATTGAGTCAGTTCTGTAATAATCCAGGGGTTCAACACTGGCTTGGAGTTAAAAGGATCATGAGATACCTTCAGGGCACCAAGGATCTCAAGTTATGTTATGTCAAAGAAGACTCTAAAGCAATAACTGGGTATTGCGATGCAAATTGGGCAAGTGACCCATTAGACAGGAGATCATGCACAGGTTACAGTTTTATCTATCAAACTGCATGCATATCCTGGAGTTCCTGTAAGCAACAGACTGTAGGCCTATCTACAGCAGAGGCCGAGTATATGGCGATGGCGTCGGCGACCCAGGAGGCCTTGTGGCTTCGTCAACTACAAGAAGAACTGGGCCAAGGTCTGGACAGTGCGTCATCATTTCAAACGAGTCTGATAAAAGCCCTGTAA
Protein
MSNTSLVALIDEGIVPFHIDRLVGRDNYASWKFAVEAYFKLEDLWDCVYGTNEDEKKEVKAKSKLVLLLDPVNYVHVQSANTCKEVWDSLQQAFDDSGLYRRVALLRDLITTTLDSSRTVDDYVNKIMLTAHKLRNIKFEIDDEWLGTLMLAGLPETYKSMIMGLESSGVKISADSIKTKLLQEVQCSESTAFFTRKVASQRNTAKVTRPDITFAVNKLSQFCNNPGVQHWLGVKRIMRYLQGTKDLKLCYVKEDSKAITGYCDANWASDPLDRRSCTGYSFIYQTACISWSSCKQQTVGLSTAEAEYMAMASATQEALWLRQLQEELGQGLDSASSFQTSLIKAL

Summary

Uniprot
Pfam
PF13961   DUF4219
Interpro
IPR039537   Retrotran_Ty1/copia-like        + More
IPR025314   DUF4219       
ProteinModelPortal

Ontologies

GO

Topology

Length:
346
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00189
Exp number, first 60 AAs:
0.00113
Total prob of N-in:
0.00734
outside
1  -  346
 
 

Population Genetic Test Statistics

Pi
26.036073
Theta
39.399907
Tajima's D
-1.010637
CLR
227.004909
CSRT
0.134393280335983
Interpretation
Uncertain
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