SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12127
Annotation
PREDICTED:_uncharacterized_protein_DDB_G0287625-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.289
 

Sequence

CDS
ATGGCCAGTGATAAGGACCTACATGACGATAAACCCATCATTGACTCTATACCTGCACAAGTAGAGTATTCCACTTTAGCAAAGCTTTTGCCGAGCTATGACGGCAACAAACGCACCCTAGCATTTTATATCGAAGGTGTGGAAAATGCATTAGAACTTATAGCAAACAAAAACGATTACATTATGGCTTGTTTAATCAGAAACAACCTATCCGGTAATGCTGTTGAAGCCCTCTCCGAGAGCCCTGGCTCAAAGACTTGGGAAGATATTAAAAGGACTTTACAAAAGAAATTTGGTAAATTTCGCACTGAAATCCAACTAATACAAGAGCTGATGAACACAACTAGAGATAATGGCTCACTAGATGTGTTCGGCGACAAAATTAAAATTCTAAGAAACGCCTTAATAACAATGGAATCAACAAGGCGAATATTTTATGAACAAATGGCATTAGAAACCTTCCTAGACAAATTAAACCCAATAACTGCAATACTTATTAGGTTAAAACATGTTGAAAATTTAGACCAAGCCATCACAAAATTAAATTTAAATCCAGGCTTAATCAGCGCAATTAAAACACAAAAGAAAATTTTACCTAATAATAACTATTCTCAAAAACCTTACCCTGCAAATAAAAAACAGCCCTTCCCCAAAAAACAAACAGATAACGAAAATCAAAACAAAAAGAAAATCTACTTCCAAAAAGAAGAATTAGATGATGACGAAGAATCATCTGACGAATCAGATGACGAGGAAGAATCATCCGAGGAAACTCGTGATGAAAATTTTCTAACGGATATGTTAAGCCAGTTGGAAACGTAG
Protein
MASDKDLHDDKPIIDSIPAQVEYSTLAKLLPSYDGNKRTLAFYIEGVENALELIANKNDYIMACLIRNNLSGNAVEALSESPGSKTWEDIKRTLQKKFGKFRTEIQLIQELMNTTRDNGSLDVFGDKIKILRNALITMESTRRIFYEQMALETFLDKLNPITAILIRLKHVENLDQAITKLNLNPGLISAIKTQKKILPNNNYSQKPYPANKKQPFPKKQTDNENQNKKKIYFQKEELDDDEESSDESDDEEESSEETRDENFLTDMLSQLET

Summary

Pfam
PF03732   Retrotrans_gag
Interpro
IPR005162   Retrotrans_gag_dom        + More
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
SUPFAM
SSF57756   SSF57756       

Ontologies

Topology

Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00263
Exp number, first 60 AAs:
0.00187
Total prob of N-in:
0.04848
outside
1  -  273
 
 

Population Genetic Test Statistics

Pi
177.522361
Theta
186.330321
Tajima's D
-0.104011
CLR
0
CSRT
0.344482775861207
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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