Gene

KWMTBOMO12122

Pre Gene Modal

BGIBMGA004251

Annotation

ornithine_decarboxylase_[Bombyx_mori]

Location

Bomo_Chr20(+):7990007-8004481      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.845

CDS

ATGAAGGTTGTGGAGGAACAACGCATCAGAGTGATGGAGGGATCGTGGTCCCCGGTCAGCGTGATCCGGGAGATCGTGGAGAGCGGGGTGCAGGAGGACCCCTTCTACGTGATGGACCTCGGCGAGGTTGTCGCCCGCTACCAGCAGTGGAAGGAGCTCCTGCCCAGGGTTGAGCCGTTTTACGCTGTGAAGTGCAATGATGACAAGTTGCTGTTGACCACCCTGGCGGCTCTGGGCACTGGCTTCGATTGCGCTTCTAAAGCTGAGATCGAACTGGTCACATCTCTAGGAGTACCACCCGAGCGGATAATATTCGCGAATCCGGCTAAAATGGCGTCTCACATCCGTTACGCGTCCGCCGTCGGGGTCGACGTGATGACCTTCGACTCGGAGATTGAACTGATGAAGATCAAGCAGTACATGCCGCACGCGCAGTTGTTGATCCGCATCCGCTGCGACGCGGCCTCGGCCCAGTGCCCGCTCGGCATCAAGTTCGGTTGCGATCCCGTCACGGAAGCTCCGCGGCTGCTGAAGCTCGCCTCTGTACTCGGACTCGATGTGGCGGGCGTGTCGTTCCACGTGGGGTCGGGCGCGGCGGAGGCGGCGGTGTTCGGGCGCGGCGTGCAGCTGGCGCGCTCGCTGTTCTCGGCCGCGCGCGACCTCGGCCTGCGCCCCCGCCTGCTGGACCTGGGCGGCGGGTACCCCGGGATCGCGGCGCAGCACCACTTCATGCTAGAGATTGCGGAGGTGGTGAACGCGGCGCTGGAGAGCCATTTCCCGGAGCGCTCGGTGCGCGTGGTAGCCGAGCCCGGGCGCTACTTCGCGGCCGCCGCCTACACGCTCGCAGCCATGGTGCACTCCAAGCGGGAGATACCGGCCAAGGAGGGCGAGGACGCCGACACTCACACCATGTACTTCATCAACGACGGCGTGTACGGCTCGTTCAACTGCGTGCTGTACGACCACCAGATCGTGTCCGCTGAGCCGCTACACGATAGGGCGGATTCAGTCCTGCCTTGCTCGGTGTGGGGCCCGAGCTGTGACGCGCTGGACTGCGTCATGGAGAGCGCGCTGCTGCCGCCACTGGACGCCGGGGACTGGCTCGTGTTCCGGGACATGGGAGCGTACACCATCCCGATCGCGTCGCCCTTCAACGGGTTCCCGGTGCCGCGGGTCAGGGCCGTGGTGGACGCCGGGCTGTGGACCGGGGGCCTGCGCGAGGCCTGGCCGCCCCTGGACGAGGAGTGCCGCGCCGCGCCGGACCTCACGCCGGACCTCACGAGCGACCTCACGCCGACGCACCGCGCGGTCTTCGTCGAGTGTGCGCTCAAGTGA

Protein

MKVVEEQRIRVMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRVEPFYAVKCNDDKLLLTTLAALGTGFDCASKAEIELVTSLGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRIRCDAASAQCPLGIKFGCDPVTEAPRLLKLASVLGLDVAGVSFHVGSGAAEAAVFGRGVQLARSLFSAARDLGLRPRLLDLGGGYPGIAAQHHFMLEIAEVVNAALESHFPERSVRVVAEPGRYFAAAAYTLAAMVHSKREIPAKEGEDADTHTMYFINDGVYGSFNCVLYDHQIVSAEPLHDRADSVLPCSVWGPSCDALDCVMESALLPPLDAGDWLVFRDMGAYTIPIASPFNGFPVPRVRAVVDAGLWTGGLREAWPPLDEECRAAPDLTPDLTSDLTPTHRAVFVECALK

Similarity

Belongs to the Orn/Lys/Arg decarboxylase class-II family.

Uniprot

Q1HPR3   A0A2H1W3I7   D0ENK2   A0A2A4J386   A0A194QL67   A0A3S2PLB5   + More
A0A212F552   I4DND3   A0A2W1BUR1   A0A2P8XXQ0   A0A1B6GQR2   A0A1Y1MTA6   A0A232FHQ5   A0A154PQT1   A0A1B6CXQ9   K7IPZ1   A0A1W4X2E5   V5GTY5   A0A182FWC2   A0A2M3Z137   A0A2M3ZG90   A0A1B6GPX0   A0A1Q3EUD0   A0A1Q3EUB2   A0A1Q3FVE1   A0A1Q3EUC0   J9JQ21   A0A182H5K4   J3JZ19   A0A023ES55   U4U7P7   N6TZ37   E9HY48   A0A336K9A9   A0A2H8TR81   Q170M0   E0VIJ3   J9K5H8   A0A0B4RYF6   A0A1L8E2F1   A0A1L8E2C4   A0A161M579   A0A1B0DJ07   A0A023F2U8   A0A3R7QHL9   A0A226F1G4   A0A224XQ26   A0A0V0G351   A0A1D2MRG0   A0A1W7RA06   A0A1B6BXV7   B3S1G3   A0A3Q0JDW9   A0A1B0ACF9   A0A369S905   A7RWL7   A0A3B0JNL7   A0A1A9XUX0   D3TP90   A0A1I8P1F8   L7M043   T1IXP3   A0A1W4WAJ3   A0A1B0BUW1   A0A131YNT6   W8BLC9   A0A087TKG1   A0A3P9MD02   A0A0K8R4A6   B3MGC9   B7QC80   A0A0L0CR92   T1PM27   B5LVY4   A0A131Y2F3   A0A0A1WGE5   H2MTX0   A0A3Q2P6G7   A0A023FXE7   Q27702   A0A2B4RZV9   A0A023GK16   A0A3P9HTV6   A0A3B3DAM9   A0A034WJY6   A0A3B3BPG3   A0A315UXR3   A0A0M4E4L7   A0A1S3IDQ9   A0A0P4WJM3   A0A023FLH2   A0A3Q2ZLF8   H0VCG0   G0U8P4   A0A3Q0RVK8   T1G8U7   A0A3B3XWA6   A0A087XVR5   A0A2C9JP85  

Pubmed

19121390    26354079    22118469    22651552    28756777    29403074    + More
28004739    28648823    20075255    26483478    22516182    24945155    23537049    21292972    17510324    20566863    25592131    25474469    27289101    18719581    30042472    17615350    20353571    25576852    26830274    24495485    17554307    17994087    26108605    18574105    25830018    25315136    29451363    25348373    29703783    21993624    22331916    23254933    15562597   

EMBL

BABH01040155    DQ443339    ABF51428.1    ODYU01005806    SOQ47064.1    GQ861425    + More
ACW82828.1    NWSH01003537    PCG66148.1    KQ459053    KPJ04186.1    RSAL01000003    RVE54717.1    AGBW02010240    OWR48871.1    AK402856    BAM19423.1    KZ149954    PZC76520.1    PYGN01001203    PSN36694.1    GECZ01005039    JAS64730.1    GEZM01023457    GEZM01023456    GEZM01023455    JAV88378.1    NNAY01000212    OXU29989.1    KQ435052    KZC14252.1    GEDC01019084    GEDC01004308    JAS18214.1    JAS32990.1    GALX01003364    JAB65102.1    GGFM01001465    MBW22216.1    GGFM01006707    MBW27458.1    GECZ01005298    JAS64471.1    GFDL01016143    JAV18902.1    GFDL01016144    JAV18901.1    GFDL01003476    JAV31569.1    GFDL01016142    JAV18903.1    ABLF02024174    JXUM01111866    KQ565544    KXJ70892.1    BT128500    AEE63457.1    JXUM01143135    GAPW01001546    KQ569540    JAC12052.1    KXJ68596.1    KB632194    ERL89919.1    APGK01055545    KB741266    ENN71527.1    GL733109    EFX63336.1    UFQS01000095    UFQT01000095    SSW99353.1    SSX19733.1    GFXV01004695    MBW16500.1    CH477472    EAT40375.1    DS235200    EEB13199.1    ABLF02037048    KJ136117    AIZ03430.1    GFDF01001193    JAV12891.1    GFDF01001194    JAV12890.1    GEMB01002453    JAS00733.1    AJVK01034626    AJVK01034627    GBBI01003353    JAC15359.1    QCYY01002764    ROT67737.1    LNIX01000001    OXA63623.1    GFTR01006183    JAW10243.1    GECL01003576    JAP02548.1    LJIJ01000677    ODM95404.1    GFAH01000407    JAV47982.1    GEDC01031414    JAS05884.1    DS985247    EDV23538.1    NOWV01000040    RDD43310.1    DS469547    EDO44188.1    OUUW01000001    SPP75169.1    EZ423242    ADD19518.1    GACK01008565    JAA56469.1    JH431658    JXJN01020939    GEDV01008801    JAP79756.1    GAMC01006958    JAB99597.1    KK115630    KFM65600.1    GADI01007818    JAA65990.1    CH902619    EDV37832.1    ABJB010042145    ABJB010120025    ABJB010141303    ABJB010236029    DS905614    EEC16452.1    JRES01000023    KNC34853.1    KA649846    AFP64475.1    EU915509    ACG76357.1    GEFM01003118    JAP72678.1    GBXI01016546    JAC97745.1    GBBL01001166    JAC26154.1    U53667    AF411043    AAA98981.1    AAL06466.1    LSMT01000251    PFX22090.1    GBBM01001141    JAC34277.1    GAKP01004869    GAKP01004867    JAC54083.1    NHOQ01002481    PWA16343.1    CP012524    ALC41028.1    GDRN01038347    JAI67258.1    GBBK01002508    JAC21974.1    AAKN02053151    HE573027    CCC53971.1    AMQM01000166    KB095811    ESO12426.1    AYCK01001308   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000007151    UP000245037    + More
UP000215335    UP000076502    UP000002358    UP000192223    UP000069272    UP000007819    UP000069940    UP000249989    UP000030742    UP000019118    UP000000305    UP000008820    UP000009046    UP000092462    UP000283509    UP000198287    UP000094527    UP000009022    UP000079169    UP000092445    UP000253843    UP000001593    UP000268350    UP000092443    UP000095300    UP000192221    UP000092460    UP000054359    UP000265180    UP000007801    UP000001555    UP000037069    UP000001038    UP000265000    UP000095301    UP000225706    UP000265200    UP000261560    UP000092553    UP000085678    UP000264800    UP000005447    UP000261340    UP000015101    UP000261480    UP000028760    UP000076420   

PRIDE

Q1HPR3    L7M043   

Pfam

PF00278   Orn_DAP_Arg_deC        + More
PF02784   Orn_Arg_deC_N

Interpro

IPR022643   De-COase2_C        + More
IPR029066   PLP-binding_barrel       
IPR002433   Orn_de-COase       
IPR022653   De-COase2_pyr-phos_BS       
IPR000183   Orn/DAP/Arg_de-COase       
IPR022657   De-COase2_CS       
IPR022644   De-COase2_N       
IPR009006   Ala_racemase/Decarboxylase_C       

SUPFAM

SSF50621   SSF50621        + More
SSF51419   SSF51419       

Gene 3D

2.40.37.10     3.20.20.10    

ProteinModelPortal

Q1HPR3   A0A2H1W3I7   D0ENK2   A0A2A4J386   A0A194QL67   A0A3S2PLB5   + More
A0A212F552   I4DND3   A0A2W1BUR1   A0A2P8XXQ0   A0A1B6GQR2   A0A1Y1MTA6   A0A232FHQ5   A0A154PQT1   A0A1B6CXQ9   K7IPZ1   A0A1W4X2E5   V5GTY5   A0A182FWC2   A0A2M3Z137   A0A2M3ZG90   A0A1B6GPX0   A0A1Q3EUD0   A0A1Q3EUB2   A0A1Q3FVE1   A0A1Q3EUC0   J9JQ21   A0A182H5K4   J3JZ19   A0A023ES55   U4U7P7   N6TZ37   E9HY48   A0A336K9A9   A0A2H8TR81   Q170M0   E0VIJ3   J9K5H8   A0A0B4RYF6   A0A1L8E2F1   A0A1L8E2C4   A0A161M579   A0A1B0DJ07   A0A023F2U8   A0A3R7QHL9   A0A226F1G4   A0A224XQ26   A0A0V0G351   A0A1D2MRG0   A0A1W7RA06   A0A1B6BXV7   B3S1G3   A0A3Q0JDW9   A0A1B0ACF9   A0A369S905   A7RWL7   A0A3B0JNL7   A0A1A9XUX0   D3TP90   A0A1I8P1F8   L7M043   T1IXP3   A0A1W4WAJ3   A0A1B0BUW1   A0A131YNT6   W8BLC9   A0A087TKG1   A0A3P9MD02   A0A0K8R4A6   B3MGC9   B7QC80   A0A0L0CR92   T1PM27   B5LVY4   A0A131Y2F3   A0A0A1WGE5   H2MTX0   A0A3Q2P6G7   A0A023FXE7   Q27702   A0A2B4RZV9   A0A023GK16   A0A3P9HTV6   A0A3B3DAM9   A0A034WJY6   A0A3B3BPG3   A0A315UXR3   A0A0M4E4L7   A0A1S3IDQ9   A0A0P4WJM3   A0A023FLH2   A0A3Q2ZLF8   H0VCG0   G0U8P4   A0A3Q0RVK8   T1G8U7   A0A3B3XWA6   A0A087XVR5   A0A2C9JP85  

PDB

1NJJ     E-value=2.91194e-84,     Score=795

KEGG

732996    K01581 ornithine decarboxylase [EC:4.1.1.17] | (RefSeq) ornithine decarboxylase

PATHWAY

00330    Arginine and proline metabolism - Bombyx mori (domestic silkworm)
00480    Glutathione metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0003824   GO:0006596   GO:0004586   GO:0033387   GO:0005737   GO:0042462   GO:0042803   GO:0009615   GO:0001822   GO:0042176   GO:0005829   GO:0008284   GO:0008270   GO:0019001   GO:0031683   GO:0007165   GO:0005525   GO:0008033   GO:0003676   GO:0016787  

PANTHER

PTHR11482  

Length:

444

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11278

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02365

outside

1  -  444

 

 

Pi

238.354392

Theta

176.626208

Tajima's D

1.12037

CLR

0

CSRT

0.693565321733913

Interpretation

Uncertain