Gene

KWMTBOMO12119

Pre Gene Modal

BGIBMGA004243

Annotation

PREDICTED:_probable_sodium-coupled_neutral_amino_acid_transporter_6_[Amyelois_transitella]

Location

Bomo_Chr20(-):7920010-7960646      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.952

CDS

ATGAATGGAAATTGCACCCCGGAAACTCCACTCGAGGAGTCGCAGACCAAGCCCTTGGTGGTGTCTAGTCACGACCGCTACACTGTTGGCGAAACCACCGGTGGGCTCAGCGTTCTGTTTACTATCCTCTGCATAGTAGATCTCTTCGGAGTGTTTCCTGTCATAGCACTACCTAAAAGCGTGATAAGTTGCGGAATATACGGCATCCCCCTAGTCCTGTCAGTGGTTGGCCTGCAGCTATACACCGCTGCCCTGCTGGGGAGGTGCTGGCTATTGGCCAAAGAAATCACTCCTATTATCAGCGAAAAGAACAGGAGTCCATACGCAGCTGTGGCACAACTAGCGTTCGGAGATCCGGCCAGGAGGCTGGTGATCTTTCTGATCGACGCCACCGTCTTCGGCTCTGGCGTTCCAAACTTCATCTTAGCCGCCCAGAGCCTGCAGATATTCTGGTGGAAGATCTCCGGTGGTAACGTTGGCGTAACATATTGCATTTGGATGTTAGTTTTAGCCTTACTGCTCTGTCCCATAATGTGGCTCGGCTCACCCAAGGATATGAAGCCTCTCGCTCTGACGTCAGTGTTCATAGTGACCACCGTGGCGGTATCCACTTGGACGTGCATCATCCAGGACGACGTTAGCCCTGTGAGCACAGGCACCATACTGGAGTATCAGCCGCATGCTCCTGACTTCCTTATCGCTTATGGCATCTTGGCTTTTCAGTTCGATATCCATCCAATGCTGTTGACCATCCAAGTGGACATGCGCGACAGTAAGAAGGTGAACAAAGCCGTGCTCGGTGGCTTCGCCATCACCGGTTTCATGTTTACCACCACCGCTTTCCTTGTGGCCACTAGATATGGCCAAGACGTCACCAATAACATACTACAGACCATCCCGCCCTCAATACCGCTGTACCTGGTAGCGTTGTTAGTGACCCTACAGCTCTGCCTCTCCAGCGCGGTCAGCAACTCCGCACTGTTCCAGCACATCGAAGACCTGTTGCAGATCCCGAGAAATTTCTGCATACAACGCTGCTTAATCCGATCAAGCGTAGTGGCTGTCGCAGTGTTCCTAGCTGAAACAGTGCCGAGGTTCGATTTAGTGATGGGCCTCGTCGGGTCCACGCTCACGGGACCACTCATGTTCATATTCCCGCCGCTATTCTTCCTAAAACTTTGTTATTTAAAATCAAAGAAGGACATAACAGAGAGCCAAAACGCTTATTCAAATAATGCGACTAACGGTTCTTTGGACAGCCAAAAAAGCAAATTAAACAAAATCGAAACAAGCGGGTCGAGTCAACAAAATGGCGTCGTGACAGTCATCCAAAATGGCGAAAATGTCAACCCATCGTTGTACACGAAATACAAGACTTTTTCGCGCGATTACGCTGAAATGGGCAAAGAAGATGAATATACGATAAAGTGGTACGACATCGTACTGGCTCTAGTGGTGATGACCCTGGGCATCGCGGCAACAGTTATAGCAACGTATTGTAGTTGGGCACATTCGATAGAGTACGCGGAGTTCTCGCCGCCATGTCTCTTAAACGCTACCATAGCGGCTAGAAGTTTCCTGGAGAGTCAAATGGCTCTATGA

Protein

MNGNCTPETPLEESQTKPLVVSSHDRYTVGETTGGLSVLFTILCIVDLFGVFPVIALPKSVISCGIYGIPLVLSVVGLQLYTAALLGRCWLLAKEITPIISEKNRSPYAAVAQLAFGDPARRLVIFLIDATVFGSGVPNFILAAQSLQIFWWKISGGNVGVTYCIWMLVLALLLCPIMWLGSPKDMKPLALTSVFIVTTVAVSTWTCIIQDDVSPVSTGTILEYQPHAPDFLIAYGILAFQFDIHPMLLTIQVDMRDSKKVNKAVLGGFAITGFMFTTTAFLVATRYGQDVTNNILQTIPPSIPLYLVALLVTLQLCLSSAVSNSALFQHIEDLLQIPRNFCIQRCLIRSSVVAVAVFLAETVPRFDLVMGLVGSTLTGPLMFIFPPLFFLKLCYLKSKKDITESQNAYSNNATNGSLDSQKSKLNKIETSGSSQQNGVVTVIQNGENVNPSLYTKYKTFSRDYAEMGKEDEYTIKWYDIVLALVVMTLGIAATVIATYCSWAHSIEYAEFSPPCLLNATIAARSFLESQMAL

Uniprot

A0A2H1W7C6   A0A3S2LVB5   A0A2W1BXN5   A0A194QQE6   A0A194QL63   A0A212F5J9   + More
A0A2A4JN10   A0A182Y778   A0A1B6H7I9   A0A084W1L9   A0A182GJX6   A0A1S4FNR5   Q16UF0   A0A1B0CZK0   A0A336N1P4   A0A182LFD9   B0W6F3   A0A182UFB9   A0A182UW32   Q7QBZ4   A0A336M5F5   A0A158NI94   A0A195FDN5   A0A151WR58   A0A182JHS3   A0A182Q699   A0A1J1HR61   A0A195EH59   A0A182K3C3   F4WPV8   A0A195CKR2   A0A2P8XZY1   A0A0M8ZUS8   A0A154PHQ6   A0A026WZ18   T1HBZ6   A0A0L7QQN2   A0A182W2W7   A0A310SAA7   A0A182PA47   A0A182RYG1   A0A088AA88   A0A232ET87   E2AC09   K7IYS7   W5JRB0   A0A2A3E285   A0A2P8XZR3   A0A1W4X5B8   E9IBL6   A0A2S2QHM8   A0A1I8N3G7   W8BPZ0   A0A0A1WRH3   A0A0M5J6Z8   A0A1I8P934   A0A1A9Y7D9   B3LWZ5   B4K7U6   A0A0K8VVW5   A0A023F2G5   A0A0K8UUB3   A0A1B0C0X7   A0A1B0GEY9  

Pubmed

28756777    26354079    22118469    25244985    24438588    26483478    + More
17510324    20966253    12364791    14747013    17210077    21347285    21719571    29403074    24508170    30249741    28648823    20798317    20075255    20920257    23761445    21282665    25315136    24495485    25830018    17994087    25474469   

EMBL

ODYU01006810    SOQ49005.1    RSAL01000172    RVE45114.1    KZ149954    PZC76523.1    + More
KQ461181    KPJ07722.1    KQ459053    KPJ04181.1    AGBW02010182    OWR49008.1    NWSH01001038    PCG72974.1    GECU01037040    JAS70666.1    ATLV01019387    KE525269    KFB44113.1    JXUM01013059    JXUM01013060    KQ560367    KXJ82786.1    CH477623    EAT38147.1    AJVK01009610    UFQT01003326    SSX34873.1    DS231848    EDS36627.1    AAAB01008859    EAA07508.5    UFQT01000461    SSX24581.1    ADTU01016112    KQ981636    KYN38775.1    KQ982813    KYQ50334.1    AXCN02000218    CVRI01000015    CRK90026.1    KQ978957    KYN27199.1    GL888255    EGI63787.1    KQ977622    KYN01315.1    PYGN01001110    PSN37494.1    KQ435878    KOX70043.1    KQ434896    KZC10730.1    KK107078    QOIP01000011    EZA60389.1    RLU17194.1    ACPB03005141    KQ414786    KOC60854.1    KQ765605    OAD53868.1    NNAY01002304    OXU21580.1    GL438389    EFN69027.1    ADMH02000651    ETN65440.1    KZ288466    PBC25442.1    PSN37493.1    GL762111    EFZ22180.1    GGMS01008052    MBY77255.1    GAMC01007677    JAB98878.1    GBXI01012638    JAD01654.1    CP012526    ALC46444.1    CH902617    EDV43834.2    CH933806    EDW16467.1    GDHF01009292    JAI43022.1    GBBI01003406    JAC15306.1    GDHF01022196    JAI30118.1    JXJN01023794    CCAG010012653   

Proteomes

UP000283053    UP000053240    UP000053268    UP000007151    UP000218220    UP000076408    + More
UP000030765    UP000069940    UP000249989    UP000008820    UP000092462    UP000075882    UP000002320    UP000075902    UP000075903    UP000007062    UP000005205    UP000078541    UP000075809    UP000075880    UP000075886    UP000183832    UP000078492    UP000075881    UP000007755    UP000078542    UP000245037    UP000053105    UP000076502    UP000053097    UP000279307    UP000015103    UP000053825    UP000075920    UP000075885    UP000075900    UP000005203    UP000215335    UP000000311    UP000002358    UP000000673    UP000242457    UP000192223    UP000095301    UP000092553    UP000095300    UP000092443    UP000007801    UP000009192    UP000092460    UP000092444   

Pfam

PF01490   Aa_trans        + More
PF01425   Amidase

Interpro

IPR013057   AA_transpt_TM        + More
IPR036928   AS_sf       
IPR023631   Amidase_dom       
IPR020556   Amidase_CS       

SUPFAM

SSF75304   SSF75304       

Gene 3D

3.90.1300.10    

ProteinModelPortal

A0A2H1W7C6   A0A3S2LVB5   A0A2W1BXN5   A0A194QQE6   A0A194QL63   A0A212F5J9   + More
A0A2A4JN10   A0A182Y778   A0A1B6H7I9   A0A084W1L9   A0A182GJX6   A0A1S4FNR5   Q16UF0   A0A1B0CZK0   A0A336N1P4   A0A182LFD9   B0W6F3   A0A182UFB9   A0A182UW32   Q7QBZ4   A0A336M5F5   A0A158NI94   A0A195FDN5   A0A151WR58   A0A182JHS3   A0A182Q699   A0A1J1HR61   A0A195EH59   A0A182K3C3   F4WPV8   A0A195CKR2   A0A2P8XZY1   A0A0M8ZUS8   A0A154PHQ6   A0A026WZ18   T1HBZ6   A0A0L7QQN2   A0A182W2W7   A0A310SAA7   A0A182PA47   A0A182RYG1   A0A088AA88   A0A232ET87   E2AC09   K7IYS7   W5JRB0   A0A2A3E285   A0A2P8XZR3   A0A1W4X5B8   E9IBL6   A0A2S2QHM8   A0A1I8N3G7   W8BPZ0   A0A0A1WRH3   A0A0M5J6Z8   A0A1I8P934   A0A1A9Y7D9   B3LWZ5   B4K7U6   A0A0K8VVW5   A0A023F2G5   A0A0K8UUB3   A0A1B0C0X7   A0A1B0GEY9  

KEGG

101739027    no KO assigned | (RefSeq) probable sodium-coupled neutral amino acid transporter 6

GO

GO:0016021   GO:0003333   GO:0015171  

Length:

533

Number of predicted TMHs:

11

Exp number of AAs in TMHs:

239.80715

Exp number, first 60 AAs:

22.54999

Total prob of N-in:

0.93904

POSSIBLE N-term signal

sequence

inside

1  -  32

TMhelix

33  -  55

outside

56  -  64

TMhelix

65  -  87

inside

88  -  121

TMhelix

122  -  144

outside

145  -  158

TMhelix

159  -  181

inside

182  -  187

TMhelix

188  -  209

outside

210  -  230

TMhelix

231  -  253

inside

254  -  265

TMhelix

266  -  288

outside

289  -  302

TMhelix

303  -  325

inside

326  -  345

TMhelix

346  -  363

outside

364  -  367

TMhelix

368  -  390

inside

391  -  479

TMhelix

480  -  502

outside

503  -  533

 

 

Pi

184.861847

Theta

156.589078

Tajima's D

1.187278

CLR

0.148781

CSRT

0.710664466776661

Interpretation

Uncertain