Gene

KWMTBOMO12114

Pre Gene Modal

BGIBMGA004347

Annotation

PREDICTED:_G_patch_domain-containing_protein_1_homolog_[Papilio_machaon]

Location

Bomo_Chr20(-):7794681-7806286      View in EpiBrowser

Full name

G patch domain-containing protein 1      

Alternative Name

Evolutionarily conserved G-patch domain-containing protein

Location in the cell

Nuclear   Reliability : 4.308

CDS

ATGACTAATTCCGACTCCGAAGACGAAAACTTCATCCGTTACGGAACTCCACTAGAGCCATATGAAGAAGATGAAATTCCAAGCAAAAGAAAATATCAGCAACAACCAGATCAGTATGCCGTTGATGACCATGGTCGAAGGAGGTTCCATGGAGCCTTCACTGGCGGCTTTTCTGCGGGATACATGAACTCTGTTGGAACACCTGAGGGATGGACACCAACCGCTTTTAAAAGTTCACGTGTAGACAAAGCACAAATATCTTCACAAAGACCAGAGGACTTTATGGATGAAGAAGATCGAGGGGAGTTTGGTATTGCTCCTCGTCAGGTGCAGATGCGCAGCAATTTTTCCGGTCAGAAGAGATCCAGACCCTCACAGTTTCATGAAGGAACAATACCTGGTGAACCAGTACTGCAGCAGTTAGTACAGGCAGTCCACGAGACAGCAGCGGTCCGTATGCTCTGTGCCATGGGCTGGAGACCAGGTCAAGGTACAGGTGAGAGGCTGTCTGTGAAACAGAAGAAACAAGCCACGGAGCAACACAAAGTATATGGCTGCTATGTCCCTCCAGAATTGAGGCAGAACTCTGAAACTCAAGAAGATGAAGACAACTCAGACTTAGAAATCGATTATGAGACTCTATTCGCGCCAGAGGATTACGAGCCTTATATCCTTGAGCGTAAAAGCGATCGTTTTGGGCTCGGCTATTCTGGCTTGAGCCGGCATTCCGTGCTAGGGAACTTGGTGGGAGAATATGGCAGCGACGCCGGTAGTACAACAAGTCGTCTTGTTATGCAAGACAAGGGAAAGAGGGTGTCAATAAGAGGCCAAGCGTTCGGAGTGGGAGCCTTCGAGGCGGAAGATGACGACATTTACGCTACAGAAGACATGTCGCACTACGATTTCGCCATAGGGAAACCGGAGAAGCAGAAGATTATCAAAGCAAAAGAGAAGAATGGAAACGTTTTAGAAGGATTCGTCAGGTCAAAGAAGCCGTTGCCGTCTGTTCCCTCGTACCCCGCACCCGCCCTCCCGCGAGACTACCGCCCCGCGCCAGCCGGACACAGGAGGTCTCGGTTCGAACCCACGCAACTACCAGGGAGGGATCAAGGTCTGGGTCGCCACGAGCTCACGGCGCAGGCCAGAGGCGCTTTACTAGGAGAAACTCCCATACAGAGACCAGCTACGGCCCAAGAAACGACTGGCCCAACCCCAAGCTCCACCCCACAGCCCCAAATCACCACGGCAACCTCACGACACATCGGAACAGACTTGACAGTCCCAAAACCAGATTACATATCCATAAAAGACTCGGGGAAGGAGTTGGTTAAGGTCTTCAGGCCGTTTGCGAGTGACCCTAAGAAGCAGTCCAGATATGAGCAGTTTCTGAAGGGCGTTGTTGTGGAGGCAGATGAAGGAGACAGACTGAGAGAGTGGGAGAGGAACAGAGAGCTGATAGAATTCGAGCAGGCGGCTAAATTGTATAAGCCTTTGAGCGGAGTTATGGAGGATAGGTTCACGCACGCCAGCGAACCGGACGATGCCCTGAACCCATTGACGGCGGTCGCCAGAAGCTCCACCGGCTACGGCTTAGCAACTTCTGAGCAGATAGAAGCGGCCAAGGGAGGTCTCTACGGCGCTGTGACCAGAGTGGAAATACAATGGCGGCCCGAAGCGCTCGTGTGCAAGAGATTTAACGTTCCCCAACCCGGCGGCATCAATACAGAAGAAAAACATCAAGAGCGACCGAAGATTTCTTACTCCGTCTTTTCGTACATGGAGTCTTCAGTACACGACAGAGACAGCTTCGCGAAAGAACAAGTCGCGTTCAGTGGGTCAAAATCGCTGAATCGGGAGCCTGTCAAAATTGACACTAGACCTGTCTCTGTTACGTCAACGTCAAATAAAACGGAACTCGTCGGCGCACCCAAAAGGATGACAGTCGCGGAATTGTTTTTAAAGGAATCGGAGCAGAACAAAAACGAAGGGGTCCAAGTGACGGAGACAATAAATAAATTCGATAAAATCGATTTGTACAAATCGATATTTCTCAGTGACAGCGAAGACGAAGACGTCGGTCAGACTAAAAATAATGATCGCGATTTCGCGGACGCGCCAAAGAATTTGGAGAGGAACAATTCACCGCCCCGTGGTATTTTCGCTAATATCGATTTCCACGAAATAAACTCTTGGAAGAGACCAGATAAAGATGTCCAAGAACAAAAGCCCAAAGATGCGGACGGTCAACCGAAAGTCGATAAAGTCGAGAATGTTCCGGCTCCCGACGAAACTTACGGACCTAAAATACCGGATAATTTTAAACCGAACCTAGCTAGTCAGACGTGTAAGCAAGACGTGACCTTAGAAATCGACTCCTCTTCCAGTTCCGACTGTTGGGTCGACGCGAACGAAGTTAAAAAGAAGAAAAAGAAAAAACTTAAGAAACACAAGTCAAAACATAAGAAGTCCAAACATTCGAAGCGAAAGAAAAAAGATAGATAA

Protein

MTNSDSEDENFIRYGTPLEPYEEDEIPSKRKYQQQPDQYAVDDHGRRRFHGAFTGGFSAGYMNSVGTPEGWTPTAFKSSRVDKAQISSQRPEDFMDEEDRGEFGIAPRQVQMRSNFSGQKRSRPSQFHEGTIPGEPVLQQLVQAVHETAAVRMLCAMGWRPGQGTGERLSVKQKKQATEQHKVYGCYVPPELRQNSETQEDEDNSDLEIDYETLFAPEDYEPYILERKSDRFGLGYSGLSRHSVLGNLVGEYGSDAGSTTSRLVMQDKGKRVSIRGQAFGVGAFEAEDDDIYATEDMSHYDFAIGKPEKQKIIKAKEKNGNVLEGFVRSKKPLPSVPSYPAPALPRDYRPAPAGHRRSRFEPTQLPGRDQGLGRHELTAQARGALLGETPIQRPATAQETTGPTPSSTPQPQITTATSRHIGTDLTVPKPDYISIKDSGKELVKVFRPFASDPKKQSRYEQFLKGVVVEADEGDRLREWERNRELIEFEQAAKLYKPLSGVMEDRFTHASEPDDALNPLTAVARSSTGYGLATSEQIEAAKGGLYGAVTRVEIQWRPEALVCKRFNVPQPGGINTEEKHQERPKISYSVFSYMESSVHDRDSFAKEQVAFSGSKSLNREPVKIDTRPVSVTSTSNKTELVGAPKRMTVAELFLKESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKNNDRDFADAPKNLERNNSPPRGIFANIDFHEINSWKRPDKDVQEQKPKDADGQPKVDKVENVPAPDETYGPKIPDNFKPNLASQTCKQDVTLEIDSSSSSDCWVDANEVKKKKKKKLKKHKSKHKKSKHSKRKKKDR

Similarity

Belongs to the GPATCH1 family.

Keywords

Acetylation   Complete proteome   Isopeptide bond   Phosphoprotein   Reference proteome   Ubl conjugation   Polymorphism  

Feature

chain  G patch domain-containing protein 1
sequence variant  In dbSNP:rs2287679.

Uniprot

H9J4A8   A0A0N1PI91   A0A2H1WBD1   A0A194Q713   A0A212FLE9   A0A2A4J8Q6   + More
A0A3S2NE48   A0A0L7LAX8   A0A2J7PJK7   A0A069DXH2   A0A1B6DZX4   A0A1B6DVQ7   A0A0V0G949   A0A067QXU9   A0A1B6L920   A0A1B6GK39   T1HMA7   B0X2T4   A0A146LLG9   A0A0A9YGP9   A0A182GG94   A0A182G1R0   Q16YD6   A0A1S4FJU7   A0A0P6J513   A0A182WDX4   W5JWT2   A0A2M3Z977   A0A2P8XEG1   A0A182QSF9   A0A2M4BCP7   A0A0C9RCW1   A0A182FB42   A0A182MKK9   B4LCT3   A0A182ISX0   A0A182RRZ2   A0A182N3Z8   A0A182UA80   B3NHI3   B4N4P1   A0A1A9VMQ1   A0A1A9ZMW4   A0A1B0FA16   A0A0L0C691   A0A1A9Y9V2   A0A1J1IKY5   A0A0L7QX35   A0A1B0BKA4   A0A1A9WTC4   A0A1I8MJD7   A0A182XJV7   A0A182HHH8   A0A182XJV5   A0A336L580   A0A1S4H7U4   A0A2U3WAM0   A0A3Q7MT68   G1MAT3   A0A2Y9LBT3   A0A3Q7UIQ4   A0A384BXI2   L5JM97   G1K130   A0A3Q7MRF9   Q24K12   M3Y8E6   U6CTC4   F6W6L1   A0A087T218   A0A131XMQ4   A0A2Y9EGA2   A0A0A0MWJ5   A0A2I3MWK6   F1RNW7   A0A2K5NXB6   A0A2K6UYU1   W5P2M7   A0A2Y9I4W6   A0A1B0C5N4   G1TAI3   A0A1S3ARH5   A0A2K6EA81   A0A2K6NP67   G7PX60   W5M143   A0A2K5WG60   G1R7Z8   A0A2K5DBI8   H2QFZ7   K7CDP3   G3WTW2   A0A2J8RL21   H9ZAM6   Q9BRR8   W5M164   F6Z6Q3  

Pubmed

19121390    26354079    22118469    26227816    26334808    24845553    + More
26823975    25401762    26483478    17510324    26999592    20920257    23761445    29403074    17994087    26108605    25315136    12364791    20010809    23258410    19393038    16305752    19892987    28049606    30723633    20809919    21993624    25362486    22002653    16136131    21709235    25319552    15489334    17974005    14702039    17081983    20068231    21406692    23186163    28112733    17495919   

EMBL

BABH01042113    BABH01042114    KQ459838    KPJ19730.1    ODYU01007514    SOQ50347.1    + More
KQ459460    KPJ00790.1    AGBW02007815    OWR54520.1    NWSH01002584    PCG67914.1    RSAL01000172    RVE45109.1    JTDY01001911    KOB72560.1    NEVH01024946    PNF16511.1    GBGD01000517    JAC88372.1    GEDC01006065    JAS31233.1    GEDC01007546    JAS29752.1    GECL01001669    JAP04455.1    KK852833    KDR15299.1    GEBQ01019811    JAT20166.1    GECZ01007019    JAS62750.1    ACPB03012515    DS232298    EDS39408.1    GDHC01009725    JAQ08904.1    GBHO01012240    JAG31364.1    JXUM01061323    KQ562145    KXJ76573.1    JXUM01137733    KQ568620    KXJ68939.1    CH477518    EAT39634.1    GDUN01000728    JAN95191.1    ADMH02000120    ETN67755.1    GGFM01004336    MBW25087.1    PYGN01002498    PSN30385.1    AXCN02001090    GGFJ01001651    MBW50792.1    GBYB01014419    JAG84186.1    AXCM01001557    CH940647    EDW70975.1    CH954178    EDV51709.1    CH964095    EDW79115.1    CCAG010018115    JRES01000945    KNC26934.1    CVRI01000054    CRL00901.1    KQ414705    KOC63155.1    JXJN01015851    APCN01002416    UFQS01001909    UFQT01001909    SSX12690.1    SSX32133.1    AAAB01008986    ACTA01123898    ACTA01131898    KB031158    ELK00524.1    BC114043    BT026213    AEYP01062883    AEYP01062884    HAAF01001733    CCP73559.1    KK113033    KFM59157.1    GEFH01000694    JAP67887.1    AHZZ02014122    AHZZ02014123    AEMK02000041    DQIR01170685    HDB26162.1    AMGL01028571    AMGL01028572    AMGL01028573    JXJN01026095    AAGW02068713    AAGW02068714    AAGW02068715    CM001294    EHH59434.1    AHAT01010652    AQIA01035377    AQIA01035378    AQIA01035379    AQIA01035380    ADFV01085763    ADFV01085764    ADFV01085765    ADFV01085766    ADFV01085767    ADFV01085768    ADFV01085769    ADFV01085770    ADFV01085771    ADFV01085772    AACZ04019766    AC183276    GABC01008730    GABF01010473    GABE01001862    NBAG03000037    JAA02608.1    JAA11672.1    JAA42877.1    PNI95486.1    GABD01010790    JAA22310.1    AEFK01020838    AEFK01020839    AEFK01020840    NDHI03003675    PNJ09218.1    JU476188    AFH32992.1    AF434677    BC006108    AL834465    AK001068   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000283053    + More
UP000037510    UP000235965    UP000027135    UP000015103    UP000002320    UP000069940    UP000249989    UP000008820    UP000075920    UP000000673    UP000245037    UP000075886    UP000069272    UP000075883    UP000008792    UP000075880    UP000075900    UP000075884    UP000075902    UP000008711    UP000007798    UP000078200    UP000092445    UP000092444    UP000037069    UP000092443    UP000183832    UP000053825    UP000092460    UP000091820    UP000095301    UP000076407    UP000075840    UP000245340    UP000286641    UP000008912    UP000248482    UP000286642    UP000261680    UP000010552    UP000009136    UP000000715    UP000002281    UP000054359    UP000248484    UP000028761    UP000008227    UP000233060    UP000233220    UP000002356    UP000248481    UP000001811    UP000079721    UP000233120    UP000233200    UP000009130    UP000018468    UP000233100    UP000001073    UP000233020    UP000002277    UP000007648    UP000005640    UP000002280   

PRIDE

H9J4A8    Q24K12    F1RNW7    Q9BRR8   

Pfam

PF07713   DUF1604        + More
PF01585   G-patch
PF00400   WD40

Interpro

IPR011666   DUF1604        + More
IPR000467   G_patch_dom       
IPR040058   GPATCH1       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       

SUPFAM

SSF50998   SSF50998       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9J4A8   A0A0N1PI91   A0A2H1WBD1   A0A194Q713   A0A212FLE9   A0A2A4J8Q6   + More
A0A3S2NE48   A0A0L7LAX8   A0A2J7PJK7   A0A069DXH2   A0A1B6DZX4   A0A1B6DVQ7   A0A0V0G949   A0A067QXU9   A0A1B6L920   A0A1B6GK39   T1HMA7   B0X2T4   A0A146LLG9   A0A0A9YGP9   A0A182GG94   A0A182G1R0   Q16YD6   A0A1S4FJU7   A0A0P6J513   A0A182WDX4   W5JWT2   A0A2M3Z977   A0A2P8XEG1   A0A182QSF9   A0A2M4BCP7   A0A0C9RCW1   A0A182FB42   A0A182MKK9   B4LCT3   A0A182ISX0   A0A182RRZ2   A0A182N3Z8   A0A182UA80   B3NHI3   B4N4P1   A0A1A9VMQ1   A0A1A9ZMW4   A0A1B0FA16   A0A0L0C691   A0A1A9Y9V2   A0A1J1IKY5   A0A0L7QX35   A0A1B0BKA4   A0A1A9WTC4   A0A1I8MJD7   A0A182XJV7   A0A182HHH8   A0A182XJV5   A0A336L580   A0A1S4H7U4   A0A2U3WAM0   A0A3Q7MT68   G1MAT3   A0A2Y9LBT3   A0A3Q7UIQ4   A0A384BXI2   L5JM97   G1K130   A0A3Q7MRF9   Q24K12   M3Y8E6   U6CTC4   F6W6L1   A0A087T218   A0A131XMQ4   A0A2Y9EGA2   A0A0A0MWJ5   A0A2I3MWK6   F1RNW7   A0A2K5NXB6   A0A2K6UYU1   W5P2M7   A0A2Y9I4W6   A0A1B0C5N4   G1TAI3   A0A1S3ARH5   A0A2K6EA81   A0A2K6NP67   G7PX60   W5M143   A0A2K5WG60   G1R7Z8   A0A2K5DBI8   H2QFZ7   K7CDP3   G3WTW2   A0A2J8RL21   H9ZAM6   Q9BRR8   W5M164   F6Z6Q3  

KEGG

101739148    K13123 G patch domain-containing protein 1 | (RefSeq) G patch domain-containing protein 1 homolog

GO

GO:0003723   GO:0006397   GO:0016021   GO:0071013   GO:0005634   GO:0000398   GO:0003676   GO:0008270   GO:0019001   GO:0031683   GO:0007165   GO:0005525   GO:0008033   GO:0016787  

PANTHER

PTHR13384:SF19  

Length:

833

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13345

Exp number, first 60 AAs:

0.07281

Total prob of N-in:

0.00666

outside

1  -  833

 

 

Pi

198.225108

Theta

162.895985

Tajima's D

0.304197

CLR

0.833213

CSRT

0.451627418629069

Interpretation

Uncertain