Gene

KWMTBOMO12106

Pre Gene Modal

BGIBMGA004353

Annotation

PREDICTED:_RNA-binding_protein_fusilli_isoform_X3_[Papilio_xuthus]

Location

Bomo_Chr20(+):7592345-7629688      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.664 Nuclear   Reliability : 1.195

CDS

ATGGCTCTGAAGCGGCATAAACACCACATCGGCCCTCGGTACATTGAGGTGTACCGGGCGAGTGGTGAAGATTTCCTCTCGGTGGCTGGTGGCGCGACCTGTGAAGCAGCTGCCTTCCTATCGCGAGGAGCGCGCGTCATCGTCAGAATGCGAGGATTACCTTACGATGCCACTGCTCAACAAGTCTTGGATTTCTTCACGAGCGGCGAGGACCCAGTCCAGGTCCTGGATGGTACTGAGGGAGTGCTGTTTGTGCGTCGCGCCGACGGTCGCGCGACCGGCGACGCTTTCGTGCTTTTCGCGAAAGAGGAGGACTCACCCAAAGCCCTGTCGCGACATCGCAAGCTCATCGGGTCTCGATACATCGAACTCTTTCGCTCCACCATCGCTGAAGTGCAGCAGGTCCTAAACCGCTCGTTGGAGAGTCGTACAAGCCAAACCAGCACCCCGTCCACGGCCCCCGCTCCCGCTGAAGGTCTTCTGCCAGTGGCGTTGGTGCCACAGCACGTTATCACATCTGGAACCGCCAAAGACTGCGTTAGACTGCGTGGACTGCCTTATGAAGCCCAGGTTGAACACATCCTGACGTTTCTGGAAGAATTCGCCAAGAACATTGTCGTGCAAGGAGTTCACATGGTTTTCAATGCCCAGGGTCATCCCAGCGGCGAGGCATTCATTCAGATGGACAGCGAGGCCAGCGCTTTCCTCTGTGCCCAGCAGAAGCATCACCGGTACATGACCTTCGGGAAGAAACAACGGTACATCGAGGTGTTCCAGTGTTCAGGCGACGACATGAACATGGTGCTAACGGGCGGCGTGACCCCGGCGACGTCCCCGAAGGTGTTGTCCCCCGGTCCTTTGACTTATTACTATTCAGCAATGGGACCGACGCTGCCACCCCCGCCGCTCGTATATTGGGGCTACCCGACACCCCCAGTCTCCCCTGCTCACTATTACCACCCTCCACACCATCCGCAAACCATGGTTAATTTTATACAAATAAGGTTAATTTTATACAAATAA

Protein

MALKRHKHHIGPRYIEVYRASGEDFLSVAGGATCEAAAFLSRGARVIVRMRGLPYDATAQQVLDFFTSGEDPVQVLDGTEGVLFVRRADGRATGDAFVLFAKEEDSPKALSRHRKLIGSRYIELFRSTIAEVQQVLNRSLESRTSQTSTPSTAPAPAEGLLPVALVPQHVITSGTAKDCVRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAQGHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPATSPKVLSPGPLTYYYSAMGPTLPPPPLVYWGYPTPPVSPAHYYHPPHHPQTMVNFIQIRLILYK

Uniprot

A0A3S2L409   S4NVL4   A0A2A4JMR5   A0A2W1CP21   A0A2H1W5I1   A0A194Q5H7   + More
A0A1E1W1X5   A0A0N1IQ32   H9J4B4   A0A2A4JNW7   A0A1Y1MBC0   A0A0T6B5P2   A0A1Y1MAP4   V5I8K1   A0A1L8DGE4   A0A2J7R0Z2   V5GQR4   A0A2J7R0X6   A0A2J7R0Y6   A0A1L8DGR4   D6WSB8   A0A139WFL7   A0A0A1WY29   A0A2J7R0Y5   A0A2J7R0Z1   A0A2J7R0Y3   E2ABC3   A0A2J7R0Y9   V9IBQ8   E9JD32   A0A1B0A7D3   A0A158NWT2   A0A0K8UJ53   A0A0J7KU84   A0A1A9VXG7   A0A0K8W3G7   W8AYV1   A0A034WBC5   A0A2P8XTD5   A0A1B6EGH5   A0A1B6D759   A0A2A3EPD3   A0A034W8Q1   A0A151JPJ4   A0A1A9Y433   A0A1B0BI53   F4W9C6   A0A195FX22   A0A2J7R0Z0   A0A0J9U2V6   A0A0A1WF22   A0A0P4W8T0   A0A1B6I734   A0A1B6MRX3   A0A154PS49   A0A1B0GAA9   A0A0P4VWB4   A0A0L7RH50   A0A1A9W9T1   A0A0M8ZPD7   A0A0A9YIV9   A0A1B6CA42   A0A2M4A7L4   A0A2M4A7D3   A0A0B4K880   A0A1B6LBY8   A0A0K8VW31   A0A1I8NAZ1   A0A2M4BD11   A0A0R3NVS5   A0A146LIN5   A0A0A9YHB2   A0A026WNJ7   A0A161MZW7   A0A1Q3G348   A0A224XN77   A0A1Q3G335   A0A0P4W3N9   A0A0K8VMH0   A0A1I8NB03   A0A3L8DVT1   A0A182VNN1   A0A1I8P1A6   W8ANQ0   A0A0A9YPU4   A0A0A9YKC6   A0A0P4W3N2   A0A067RKA5   A0A182H406   A0A0C9RKR2   A0A3B0IYA1   A0A2M4CXC5   A0A182FU22   A0A0J9RDI3   B0WRI7   A0A0Q9XHJ8   A0A069DWC1   W5JJP3   A0A1W4WK73   A0A2M4CYI3  

Pubmed

23622113    28756777    26354079    19121390    28004739    18362917    + More
19820115    25830018    20798317    21282665    21347285    24495485    25348373    29403074    21719571    22936249    25401762    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25315136    15632085    17994087    26823975    24508170    30249741    24845553    26483478    26334808    20920257    23761445   

EMBL

RSAL01000172    RVE45104.1    GAIX01011491    JAA81069.1    NWSH01001014    PCG73109.1    + More
NHMN01023844    PZC87385.1    ODYU01006157    SOQ47764.1    KQ459460    KPJ00798.1    GDQN01010056    JAT80998.1    KQ459838    KPJ19722.1    BABH01041341    PCG73110.1    GEZM01036199    GEZM01036198    JAV82901.1    LJIG01009637    KRT82681.1    GEZM01036194    JAV82909.1    GALX01004545    JAB63921.1    GFDF01008568    JAV05516.1    NEVH01008216    PNF34495.1    GALX01004544    JAB63922.1    PNF34490.1    PNF34491.1    GFDF01008438    JAV05646.1    KQ971352    EFA06390.1    KYB26597.1    GBXI01010716    JAD03576.1    PNF34498.1    PNF34496.1    PNF34494.1    GL438237    EFN69244.1    PNF34492.1    JR037395    AEY57749.1    GL771866    EFZ09344.1    ADTU01028468    GDHF01025736    JAI26578.1    LBMM01003158    KMQ93883.1    GDHF01014259    GDHF01006685    JAI38055.1    JAI45629.1    GAMC01020464    JAB86091.1    GAKP01007869    GAKP01007866    JAC51083.1    PYGN01001378    PSN35277.1    GEDC01000252    JAS37046.1    GEDC01015777    JAS21521.1    KZ288206    PBC33066.1    GAKP01007868    GAKP01007867    GAKP01007865    JAC51084.1    KQ978718    KYN29054.1    JXJN01014772    JXJN01014773    GL888002    EGI69308.1    KQ981204    KYN44976.1    PNF34497.1    CM002911    KMY94040.1    GBXI01016795    JAC97496.1    GDRN01091681    GDRN01091675    JAI60238.1    GECU01025006    JAS82700.1    GEBQ01001280    JAT38697.1    KQ435037    KZC14088.1    CCAG010006819    CCAG010006820    GDRN01091686    JAI60235.1    KQ414596    KOC70031.1    KQ435944    KOX68207.1    GBHO01012053    GBRD01014752    GBRD01014751    JAG31551.1    JAG51074.1    GEDC01026955    GEDC01013842    JAS10343.1    JAS23456.1    GGFK01003399    MBW36720.1    GGFK01003395    MBW36716.1    AE013599    AFH08101.1    GEBQ01018774    JAT21203.1    GDHF01009217    JAI43097.1    GGFJ01001791    MBW50932.1    CM000071    KRT03293.1    GDHC01010635    JAQ07994.1    GBHO01012055    JAG31549.1    KK107151    EZA57241.1    GEMB01003147    JAS00062.1    GFDL01000822    JAV34223.1    GFTR01006536    JAW09890.1    GFDL01000832    JAV34213.1    GDRN01091678    GDRN01091677    JAI60242.1    GDHF01012594    JAI39720.1    QOIP01000003    RLU24531.1    GAMC01020467    GAMC01020466    GAMC01020465    GAMC01020463    JAB86088.1    GBHO01012054    JAG31550.1    GBHO01012051    GBRD01015566    GBRD01014754    GBRD01014750    GBRD01011529    JAG31553.1    JAG50260.1    GDRN01091689    JAI60233.1    KK852423    KDR24242.1    JXUM01108447    JXUM01108448    KQ565231    KXJ71204.1    GBYB01013882    GBYB01013883    JAG83649.1    JAG83650.1    OUUW01000001    SPP72707.1    GGFL01005741    MBW69919.1    KMY94042.1    DS232056    EDS33385.1    CH933808    KRG05354.1    GBGD01000748    JAC88141.1    ADMH02001328    ETN62989.1    GGFL01005740    MBW69918.1   

Proteomes

UP000283053    UP000218220    UP000053268    UP000053240    UP000005204    UP000235965    + More
UP000007266    UP000000311    UP000092445    UP000005205    UP000036403    UP000078200    UP000245037    UP000242457    UP000078492    UP000092443    UP000092460    UP000007755    UP000078541    UP000076502    UP000092444    UP000053825    UP000091820    UP000053105    UP000000803    UP000095301    UP000001819    UP000053097    UP000279307    UP000075903    UP000095300    UP000027135    UP000069940    UP000249989    UP000268350    UP000069272    UP000002320    UP000009192    UP000000673    UP000192223   

PRIDE

H9J4B4   

Pfam

PF00076   RRM_1        + More
PF01412   ArfGap

Interpro

IPR000504   RRM_dom        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR036397   RNaseH_sf       
IPR035979   RBD_domain_sf       
IPR034431   ESRP2       
IPR034980   Fusilli_RRM2       
IPR037278   ARFGAP/RecO       
IPR001164   ArfGAP_dom       
IPR038508   ArfGAP_dom_sf       

SUPFAM

SSF54928   SSF54928        + More
SSF57863   SSF57863       

Gene 3D

3.30.420.10     3.30.70.330     3.30.40.160    

CDD

cd12741  RRM2_Fusilli

ProteinModelPortal

A0A3S2L409   S4NVL4   A0A2A4JMR5   A0A2W1CP21   A0A2H1W5I1   A0A194Q5H7   + More
A0A1E1W1X5   A0A0N1IQ32   H9J4B4   A0A2A4JNW7   A0A1Y1MBC0   A0A0T6B5P2   A0A1Y1MAP4   V5I8K1   A0A1L8DGE4   A0A2J7R0Z2   V5GQR4   A0A2J7R0X6   A0A2J7R0Y6   A0A1L8DGR4   D6WSB8   A0A139WFL7   A0A0A1WY29   A0A2J7R0Y5   A0A2J7R0Z1   A0A2J7R0Y3   E2ABC3   A0A2J7R0Y9   V9IBQ8   E9JD32   A0A1B0A7D3   A0A158NWT2   A0A0K8UJ53   A0A0J7KU84   A0A1A9VXG7   A0A0K8W3G7   W8AYV1   A0A034WBC5   A0A2P8XTD5   A0A1B6EGH5   A0A1B6D759   A0A2A3EPD3   A0A034W8Q1   A0A151JPJ4   A0A1A9Y433   A0A1B0BI53   F4W9C6   A0A195FX22   A0A2J7R0Z0   A0A0J9U2V6   A0A0A1WF22   A0A0P4W8T0   A0A1B6I734   A0A1B6MRX3   A0A154PS49   A0A1B0GAA9   A0A0P4VWB4   A0A0L7RH50   A0A1A9W9T1   A0A0M8ZPD7   A0A0A9YIV9   A0A1B6CA42   A0A2M4A7L4   A0A2M4A7D3   A0A0B4K880   A0A1B6LBY8   A0A0K8VW31   A0A1I8NAZ1   A0A2M4BD11   A0A0R3NVS5   A0A146LIN5   A0A0A9YHB2   A0A026WNJ7   A0A161MZW7   A0A1Q3G348   A0A224XN77   A0A1Q3G335   A0A0P4W3N9   A0A0K8VMH0   A0A1I8NB03   A0A3L8DVT1   A0A182VNN1   A0A1I8P1A6   W8ANQ0   A0A0A9YPU4   A0A0A9YKC6   A0A0P4W3N2   A0A067RKA5   A0A182H406   A0A0C9RKR2   A0A3B0IYA1   A0A2M4CXC5   A0A182FU22   A0A0J9RDI3   B0WRI7   A0A0Q9XHJ8   A0A069DWC1   W5JJP3   A0A1W4WK73   A0A2M4CYI3  

PDB

2RVJ     E-value=1.69078e-27,     Score=304

KEGG

101740369    K14947 epithelial splicing regulatory protein 1/2 | (RefSeq) RNA-binding protein fusilli

GO

GO:0003723   GO:0003676   GO:0005096   GO:0046872   GO:0000166   GO:0007186   GO:0019001   GO:0031683   GO:0007165   GO:0005525   GO:0008033   GO:0016787  

PANTHER

PTHR13976:SF30  

Length:

340

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18777

Exp number, first 60 AAs:

0.16181

Total prob of N-in:

0.06929

outside

1  -  340

 

 

Pi

185.276304

Theta

168.8314

Tajima's D

-1.429081

CLR

1328.563562

CSRT

0.0656967151642418

Interpretation

Uncertain