SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12094  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004276
Annotation
mitochondrial_phosphoenolpyruvate_carboxykinase_isoform_2_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.458
 

Sequence

CDS
ATGGTGTTTTTTATAAAGAGCGTTACGAAGAGATGTGCTCAAGTGGCGATTGGATGCAGCCGCGCTGCCCACCAAACTGCTCTGCGAGGGTCGACGAAGCCTTCCCCACAGCTGGCCACTCTTACTCCAAAGGTCCGCGCGTTCGTGGAGCGCAGCGCTGCTCTGTGCCAGCCGGAGCACGTGCACGTGTGCGACGGCTCCGAGACAGAGGCGAGGGCGCTGCTACAGCTGATGCAGCAGCAGACCACCCTCAAACGACTGCCCCAATACGATAACTGTTGGTTGGCCCGGACAGACCCGGCAGACGTTGCCCGGGTTGAATCCCGCACGTTCATATGCTCCGATCGGGAGAGCGACGTGGTCCCCTCGGCTCGCGCCGGCCAGAAGTCCGCCCTGGGGAACTACATCTCCCCCCCGGATTACGAGAAGGCCGTGTCCGACAGATTCCCTGGTTGTATGAAAGGACGCACAATGTACGTGATACCATTCTCGATGGGTCCTGTGGGATCTCCTCTCTCGAAGATCGGCGTAGAAATCACGGATTCGCCTTACGTGGTTTATTCTATGCGAGTCATGACTAGAATTGGAGCGAAGGTTCTAGAAATTCTACGTCAAGACGAGCAGTTCGTTCGTTGTCTTCACGCAGTCGGCTCCGGTGGCACTCCGGGTTGGCCCTGCGACCCTAAGAACACCATCATACTCCACAAGCCGGCTGAGAACGAGATCGTAAGCTACGGCAGTGGATACGGCGGCAATAGTTTGTTGGGCAAGAAGTGCTTCGCTCTACGTCTGGGATCAGTGATCGCTCGTCGCGAAGGATGGCTGGCCGAACATATGCTTATCGTCGGCATAACCAACCCTCAAGGTAAGAAGCGCTACATCGCTGCCGCTTTTCCTTCAGCTTGCGGGAAAACGAACCTTGCCATGATGACGCCAACACTGCCCGGGTACAAAGTAGAGTGCGTGGGGGACGACATAGCCTGGATGAAGTTCGACAAGGACGGCGTACTCCGGGCCATTAACCCGGAAAACGGGTTCTTTGGAGTTGCACCAGGTACGTCAGCCGCTACGAATCCGATAGCAATGGCGACGGTGTTCAAAAACACCGTGTTCACTAACGTGGCGGAAACACCTGAGGGTGGGGTGTGGTGGGAAGGCATGGGACCAGCTCCGGAGCGCCTCGTCGACTGGAAAGGTCAACCCTGGGACCCCAGCAAGAAAACTCCGGCTGCACATCCAAATTCCAGATTCTGCACCCCGGCAGAGCAGTGTCCCATGATAGACGGTGAGTGGGAGAGCTCGGAGGGTGTGCCGATATCCGCCATCCTGCTGGGCGGCAGACGGCCGGCCGGCGTACCGCTCGTAGTCGAGTCGCGGGACTGGCAGCACGGCGTGTTCATGGGAGCTTCCATGAGGTCCGAGGCCACGGCCGCCGCCGAACACAGCGGTAAAATGGTGATGCACGATCCGTTTGCGATGCGTCCGTTCTTCGGCTACAACTTCGGCGACTACCTGAAGCACTGGCTGTCGATGCCGCAGCCTGGACGAAACATGCCCAAGATCTTCCACGTCAACTGGTTCCGTAAAGATGAACAGGGTAAGTTCCTCTGGCCCGGTTTCGGCGAGAACTCTCGGGTCTTAGACTGGATCTTGCGTCGCTGCGACGGGGAGCCCTGCCACGCCGAGACTCCACTGGGGTACATACCGAGAGCCGGTGCTCTGAATACGGAAAACCTAAGCGCTGTCGACATGAACGAGCTGTTCAGCATACCTAAAGACTTTTGGCTGCAGGAGTCTGACGCCATCGAGAAGTACTTCAAAGAGGAGGTAGGCGAAGATCTACCCAACGAAATGTGGGACGAATTGAACAAGTTGAGGAAGAACATACAAGCCTAA
Protein
MVFFIKSVTKRCAQVAIGCSRAAHQTALRGSTKPSPQLATLTPKVRAFVERSAALCQPEHVHVCDGSETEARALLQLMQQQTTLKRLPQYDNCWLARTDPADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAKVLEILRQDEQFVRCLHAVGSGGTPGWPCDPKNTIILHKPAENEIVSYGSGYGGNSLLGKKCFALRLGSVIARREGWLAEHMLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLRAINPENGFFGVAPGTSAATNPIAMATVFKNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQPWDPSKKTPAAHPNSRFCTPAEQCPMIDGEWESSEGVPISAILLGGRRPAGVPLVVESRDWQHGVFMGASMRSEATAAAEHSGKMVMHDPFAMRPFFGYNFGDYLKHWLSMPQPGRNMPKIFHVNWFRKDEQGKFLWPGFGENSRVLDWILRRCDGEPCHAETPLGYIPRAGALNTENLSAVDMNELFSIPKDFWLQESDAIEKYFKEEVGEDLPNEMWDELNKLRKNIQA

Summary

EMBL
DQ443380    ABF51469.1    BABH01032627    DQ443379    ABF51468.1    BABH01032622    + More
BABH01032623    BABH01032624    BABH01032625    KQ459460    KPJ00812.1    NWSH01000561    PCG75649.1    JQ730685    AFK28502.1    KZ150212    PZC72166.1    AGBW02012739    OWR44517.1    ODYU01011631    SOQ57498.1    RSAL01000029    RVE51794.1    KC409335    AGC79089.1    KC409325    AGC79079.1    KC409343    AGC79097.1    KC409349    AGC79103.1    KC409337    AGC79091.1    KC409339    AGC79093.1    KC409344    AGC79098.1    KC409338    AGC79092.1    KC409348    AGC79102.1    KC409323    AGC79077.1    KC409332    AGC79086.1    KC409341    AGC79095.1    KC409347    AGC79101.1    KC409334    AGC79088.1    KC409329    AGC79083.1    KC409326    AGC79080.1    KC409352    AGC79106.1    KC409342    AGC79096.1    KC409320    AGC79074.1    KC409328    AGC79082.1    KC409351    AGC79105.1    KC409330    AGC79084.1    KC409340    AGC79094.1    KC409331    AGC79085.1    KC409333    AGC79087.1    KC409353    AGC79107.1    KC409345    AGC79099.1    KC409354    AGC79108.1    KC409322    AGC79076.1    KC409327    AGC79081.1    KC409336    AGC79090.1    KC409319    AGC79073.1    KC409346    AGC79100.1    KC404923    AGC79037.1    KC409321    AGC79075.1    KC404947    AGC79061.1    KC404941    AGC79055.1    KC404953    AGC79067.1    KC404939    AGC79053.1    KC404932    AGC79046.1    KC404952    AGC79066.1    KC404943    AGC79057.1    KC404942    AGC79056.1    KC404948    AGC79062.1    KC404930    AGC79044.1    KC404933    AGC79047.1    KC404951    AGC79065.1    KC409324    AGC79078.1    KC404936    AGC79050.1    KC404945    AGC79059.1    KC404956    AGC79070.1    KC404927    AGC79041.1    KC404946    AGC79060.1    KC404931    AGC79045.1    KC404924    AGC79038.1    KC404955    AGC79069.1    KC404929    AGC79043.1    KC404958    AGC79072.1    KC404944    AGC79058.1    KC404925    AGC79039.1    KC404928    AGC79042.1    KC404957    AGC79071.1    KC404926    AGC79040.1    KC404949    AGC79063.1    KC404938    AGC79052.1    KC404934    AGC79048.1    KC404935    AGC79049.1    KC404937    AGC79051.1    KC404950    AGC79064.1    KC404940    AGC79054.1    KC409350    AGC79104.1    KC404954    AGC79068.1    DQ443382    ABF51471.1    DQ443381    ABF51470.1    GFDF01001879    JAV12205.1    KX147668    ARI45072.1    GALX01004273    JAB64193.1    MH509395    AYU75340.1    KQ971354    KYB26254.1    EFA06223.2    FX983740    BAX07239.1    NEVH01021928    PNF19275.1    CCAG010009432    EZ423796    ADD20072.1    BT127980    AEE62942.1    CP012524    ALC41177.1    JRES01001421    KNC23063.1    GBXI01016644    JAC97647.1   
Pfam
PF17297   PEPCK_N        + More
PF00821   PEPCK_GTP
Interpro
IPR035077   PEP_carboxykinase_GTP_C        + More
IPR035078   PEP_carboxykinase_GTP_N       
IPR008210   PEP_carboxykinase_N       
IPR013035   PEP_carboxykinase_C       
IPR018091   PEP_carboxykin_GTP_CS       
IPR008209   PEP_carboxykinase_GTP       
SUPFAM
SSF68923   SSF68923       
Gene 3D
PDB
2GMV     E-value=0,     Score=1969

Ontologies

Topology

Length:
631
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01518
Exp number, first 60 AAs:
0.00013
Total prob of N-in:
0.00104
outside
1  -  631
 
 

Population Genetic Test Statistics

Pi
200.134502
Theta
151.920233
Tajima's D
0.8043
CLR
0.255913
CSRT
0.60321983900805
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 YASALFSAASK 100.00 7e-13
28556443 ESDVVPSAR 100.00 6e-12
26280517 RVTIEIGGK 95.24 1e-08
27102218 FIWPGFGENSR 95.24 1e-08
28556443 AINPENGFFGVAPGTSAATNPIAMATVFK 100.00 2e-07
26280517 TEVNSGFFYK 100.00 1e-04
26822097 YIAAAFPSACGK 100.00 0.001
26280517 DWIAEKDAAIASDDIGR 100.00 0.001
25044914 DWPYYYEHAFGAK 100.00 0.001
28556443 FLWPGFGENSR 100.00 0.002
28556443 NTVFTNVAETPEGGVWWEGMGPAPER 100.00 0.003
28556443 TNLAMMTPTLPGYK 100.00 0.003
28556443 RPAGVPLVVESR 100.00 0.003
28556443 NTIILHKPAENEIVSYGSGYGGNSLLGK 100.00 0.003
26822097 FIWPGFGENSR 100.00 0.012
26280517 VDTVPIEPK 100.00 0.012
25044914 VECQNHWFVYNER 100.00 0.012
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