Gene

KWMTBOMO12092  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004339

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_sister_chromatid_cohesion_protein_DCC1_[Papilio_machaon]

Location

Bomo_Chr20(+):7131406-7137100      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.918

CDS

ATGACCTGTGAAAATGAAACGAGGACACCGGAAGACGTAAGGAAAATCATTAAGACTGCAAAGCTACACGAATCTGAGCTGACAGAAGTATCTCAAATCTTGAGATTTCCCCCGCAGAACAAGGAAAATGATAATTTACGATTAATGTTACTAGACGACGTCCTCTTGAAAGAAATCGAAGCTGGAAACCAGTTAATTTTTAAAGGAGATTCTGAAGAAAGCGTTGTACTATGTACAGAAAATAAGACTTATGATGTCAAAGAAGCCGAAACGTCAAACAGCTTGCTATTACTACCCGACTTATTGTTCTCGGCATCTACTGGCTTAGATGAAACGATTCAGAACAATTCTATGGAAGATTCGGATACTTCGTTAGATAAATCTAATAGCAGTTTAAATAAATCTACAGACTCGGACGAAGGTCGAACGCCAAGGAGAATAGAACATAAAGACATAGTTAACACATTCTTTACTTACTATGAACTGAAGCCATGTAAGCCTCGACTCTCTAAATTGAGAAAATTACTCGAAAGCACCAAATATCAGGGTCCTGAGTTGGAGTATACCGTAAACAAAACGGAGCTTTTAAACCATGAAAGTTTGCTTGACCAAGTTCAGGCGTCGCGGGCTGAATTGGATGAAGAGTTAGAAAGGATACAAGCTATTAATATAGAGGGTTATTATAGGTTACTCGAGTTTGATTACGAATTTCGGGTCCTATCGTACATGCTTGACTTAATAGAAGAAAATTCGTGGCCATTGAACAAGATATCGAAAGAAGTAACGCTGGAAAGCCTCAAAGATTTAGTTCCGGAACCAATATTGGAGGGAATGTTTAGATTTTACACGAAAAAATCTGTTCTGGAAGACACACAGTATTATGAGTATAAAGAAGATAAAGTTTGCAGGTTCTTAGCGAGAGTTTTGTTGAAGAGCGCAGGGAAATTCAATTTGGCAGAGTTCTTGCAGGCTTGGAGTGACTCTGTACCTGAAGGCATGACAACAGACGAATCTCTCTTAGCCGGGTATGCGATAATAGATAGAAATAGTAGTCCGAATTTGATATGGGGATTCACGGAGACAGATTTGCCTGATGAGATCAACGAACGCTTCAAGGTGTTGTTCCAAACGAAGGCCAAGTGGACTGTTGATGAGATATCACCGTATGTACAATGTTATGCAACAGAAAAGTTAAATGTCAACGCGCTGTTGACGAAATACGCGCGAGCCTCGACGCAAGATGGCGTCCGCGTGTTCTCCGCTAAGCACATGAAATAA

Protein

MTCENETRTPEDVRKIIKTAKLHESELTEVSQILRFPPQNKENDNLRLMLLDDVLLKEIEAGNQLIFKGDSEESVVLCTENKTYDVKEAETSNSLLLLPDLLFSASTGLDETIQNNSMEDSDTSLDKSNSSLNKSTDSDEGRTPRRIEHKDIVNTFFTYYELKPCKPRLSKLRKLLESTKYQGPELEYTVNKTELLNHESLLDQVQASRAELDEELERIQAINIEGYYRLLEFDYEFRVLSYMLDLIEENSWPLNKISKEVTLESLKDLVPEPILEGMFRFYTKKSVLEDTQYYEYKEDKVCRFLARVLLKSAGKFNLAEFLQAWSDSVPEGMTTDESLLAGYAIIDRNSSPNLIWGFTETDLPDEINERFKVLFQTKAKWTVDEISPYVQCYATEKLNVNALLTKYARASTQDGVRVFSAKHMK

Uniprot

H9J4A0   A0A2A4JVD1   A0A2W1BEB4   A0A2H1WWY4   A0A3S2LQM0   A0A194Q5J1   + More
A0A212ESP5   A0A0L7L651   A0A1E1W8F3   A0A067REG9   A0A2J7PMJ7   A0A2J7PMJ8   D6WSW4   A0A0T6B0I7   A0A1B6HDZ0   A0A1B6F2G2   J3JYR7   A0A1B6DB07   A0A1W4XMU9   A0A1W4VI13   A0A1B0CG14   B4MNP6   A0A0L0CN24   B4PAN1   B4LMU1   B3NK52   B4GI14   B4KN87   Q28ZA6   A0A1Y1KNE7   A0A1A9XP07   A0A0K8V6M9   A0A1B0B7D7   A0A0J9RH46   A0A1I8MJM0   Q4V3Z5   A0A034VC70   A0A1I8NW80   B3MHM0   J9JWE5   A0A1B6J7G3   A0A3B0J1Z6   B4HQ53   B4J7B0   A0A3B0J1W2   A0A1A9V5F0   W8C0T7   A0A1A9WIT1   A0A182RLT3   A0A1A9ZGJ3   A0A1B0G7N1   A0A182YRV5   A0A023F1I3   A0A182GTS6   A0A182PM12   A0A182KV16   Q7QE11   A0A182SGZ1   A0A182LTN8   A0A182WE63   A0A182VNK2   A0A182FUN8   A0A146KMK3   A0A210PNR5   A0A0A9WMG4   T1I0J2   W5JUM7   A0A154PBA1   A0A0K8U8E4   A0A2A3EEY8   A0A1J1I194   A0A182K4F3   A0A0L7RDH7   A0A0L8HXI4   A0A182QPC0   V5I0E0   A0A084WNI9   Q16XX1   H3ASD7   A0A182UAR4   A0A1S3IEN0   A0A088AN44   A0A1Q3EW09   A0A336MIX6   A0A336MZA5   B0WYL2   A0A2T7NPP9   F1MTU0   V4BI22   G1L5W4   D2HSN3   A0A147AWC7   A0A3Q2NQ92   A0A3Q2NQ38   I3JIC0   A0A1U7UGM6   A0A146YHB2   H9GEN0  

Pubmed

19121390    28756777    26354079    22118469    26227816    24845553    + More
18362917    19820115    22516182    23537049    17994087    26108605    17550304    15632085    28004739    22936249    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25348373    24495485    25244985    25474469    26483478    20966253    12364791    14747013    17210077    26823975    28812685    25401762    20920257    23761445    25765539    24438588    17510324    9215903    19393038    23254933    20010809    25186727    21881562   

EMBL

BABH01032622    NWSH01000561    PCG75648.1    KZ150212    PZC72165.1    ODYU01011631    + More
SOQ57497.1    RSAL01000029    RVE51795.1    KQ459460    KPJ00813.1    AGBW02012739    OWR44518.1    JTDY01002701    KOB70890.1    GDQN01007815    JAT83239.1    KK852513    KDR22266.1    NEVH01023984    PNF17560.1    PNF17562.1    KQ971352    EFA07653.2    LJIG01016313    KRT80975.1    GECU01034796    JAS72910.1    GECZ01025405    GECZ01023611    JAS44364.1    JAS46158.1    APGK01054084    BT128397    KB741247    KB632281    AEE63355.1    ENN71989.1    ERL91326.1    GEDC01014513    JAS22785.1    AJWK01010639    CH963848    EDW73735.1    JRES01000171    KNC33686.1    CM000158    EDW91422.1    CH940648    EDW61032.2    CH954179    EDV55287.2    CH479183    EDW36134.1    CH933808    EDW09940.1    CM000071    EAL25708.2    GEZM01083864    JAV60966.1    GDHF01018099    GDHF01003116    JAI34215.1    JAI49198.1    JXJN01009550    CM002911    KMY95236.1    AE013599    BT023211    AAF57488.2    AAY55627.1    GAKP01018053    GAKP01018051    JAC40901.1    CH902619    EDV35856.1    ABLF02032235    GECU01012604    JAS95102.1    OUUW01000001    SPP72933.1    CH480816    EDW48678.1    CH916367    EDW02128.1    SPP72932.1    GAMC01007284    JAB99271.1    CCAG010016887    GBBI01003387    JAC15325.1    JXUM01087779    KQ563658    KXJ73534.1    AAAB01008848    EAA07032.4    AXCM01002773    GDHC01021903    JAP96725.1    NEDP02005572    OWF38117.1    GBHO01034615    JAG08989.1    ACPB03006600    ADMH02000322    ETN66978.1    KQ434864    KZC09132.1    GDHF01029488    JAI22826.1    KZ288269    PBC30044.1    CVRI01000033    CRK92614.1    KQ414613    KOC69042.1    KQ417062    KOF93948.1    AXCN02001819    GANP01002006    JAB82462.1    ATLV01024612    KE525353    KFB51783.1    CH477530    EAT39472.1    AFYH01057661    AFYH01057662    AFYH01057663    AFYH01057664    GFDL01015551    JAV19494.1    UFQT01001373    SSX30236.1    UFQT01003468    SSX35025.1    DS232191    EDS37089.1    PZQS01000010    PVD23147.1    KB199650    ESP05567.1    ACTA01097443    GL193294    EFB26443.1    GCES01003524    JAR82799.1    AERX01027706    GCES01032752    JAR53571.1    AAWZ02022714   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000037510    + More
UP000027135    UP000235965    UP000007266    UP000019118    UP000030742    UP000192223    UP000192221    UP000092461    UP000007798    UP000037069    UP000002282    UP000008792    UP000008711    UP000008744    UP000009192    UP000001819    UP000092443    UP000092460    UP000095301    UP000000803    UP000095300    UP000007801    UP000007819    UP000268350    UP000001292    UP000001070    UP000078200    UP000091820    UP000075900    UP000092445    UP000092444    UP000076408    UP000069940    UP000249989    UP000075885    UP000075882    UP000007062    UP000075901    UP000075883    UP000075920    UP000075903    UP000069272    UP000242188    UP000015103    UP000000673    UP000076502    UP000242457    UP000183832    UP000075881    UP000053825    UP000053454    UP000075886    UP000030765    UP000008820    UP000008672    UP000075902    UP000085678    UP000005203    UP000002320    UP000245119    UP000009136    UP000030746    UP000008912    UP000265000    UP000005207    UP000189704    UP000001646   

PRIDE

H9J4A0    Q4V3Z5   

Pfam

PF09724   Dcc1

Interpro

IPR019128   Dcc1       

ProteinModelPortal

H9J4A0   A0A2A4JVD1   A0A2W1BEB4   A0A2H1WWY4   A0A3S2LQM0   A0A194Q5J1   + More
A0A212ESP5   A0A0L7L651   A0A1E1W8F3   A0A067REG9   A0A2J7PMJ7   A0A2J7PMJ8   D6WSW4   A0A0T6B0I7   A0A1B6HDZ0   A0A1B6F2G2   J3JYR7   A0A1B6DB07   A0A1W4XMU9   A0A1W4VI13   A0A1B0CG14   B4MNP6   A0A0L0CN24   B4PAN1   B4LMU1   B3NK52   B4GI14   B4KN87   Q28ZA6   A0A1Y1KNE7   A0A1A9XP07   A0A0K8V6M9   A0A1B0B7D7   A0A0J9RH46   A0A1I8MJM0   Q4V3Z5   A0A034VC70   A0A1I8NW80   B3MHM0   J9JWE5   A0A1B6J7G3   A0A3B0J1Z6   B4HQ53   B4J7B0   A0A3B0J1W2   A0A1A9V5F0   W8C0T7   A0A1A9WIT1   A0A182RLT3   A0A1A9ZGJ3   A0A1B0G7N1   A0A182YRV5   A0A023F1I3   A0A182GTS6   A0A182PM12   A0A182KV16   Q7QE11   A0A182SGZ1   A0A182LTN8   A0A182WE63   A0A182VNK2   A0A182FUN8   A0A146KMK3   A0A210PNR5   A0A0A9WMG4   T1I0J2   W5JUM7   A0A154PBA1   A0A0K8U8E4   A0A2A3EEY8   A0A1J1I194   A0A182K4F3   A0A0L7RDH7   A0A0L8HXI4   A0A182QPC0   V5I0E0   A0A084WNI9   Q16XX1   H3ASD7   A0A182UAR4   A0A1S3IEN0   A0A088AN44   A0A1Q3EW09   A0A336MIX6   A0A336MZA5   B0WYL2   A0A2T7NPP9   F1MTU0   V4BI22   G1L5W4   D2HSN3   A0A147AWC7   A0A3Q2NQ92   A0A3Q2NQ38   I3JIC0   A0A1U7UGM6   A0A146YHB2   H9GEN0  

PDB

5MSN     E-value=0.000168927,     Score=107

KEGG

101741204    K11271 sister chromatid cohesion protein DCC1 | (RefSeq) sister chromatid cohesion protein DCC1

GO

GO:0031390   GO:0007064   GO:0005654   GO:0000775   GO:0000785   GO:0034088   GO:0006275   GO:0016021   GO:0034421   GO:0043142   GO:0003689   GO:1900264  

PANTHER

PTHR13395  

Length:

425

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00206

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03342

outside

1  -  425

 

 

Pi

285.3922

Theta

197.85903

Tajima's D

1.461995

CLR

0.005722

CSRT

0.776811159442028

Interpretation

Uncertain