SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12090
Pre Gene Modal
BGIBMGA004338
Annotation
Uncharacterized_protein_OBRU01_14583_[Operophtera_brumata]
Location in the cell
Cytoplasmic   Reliability : 1.451
 

Sequence

CDS
ATGGCTAGTAGCATTCATAATTACGGCGTCGAAGTGTCGGCTGAAGAAAAGGAATTTCAAAATGTTTGGAATAGATTTTCGGAATGGTTGCATTGTATATGTGTAGTAACATTCGACTTAGAGCTTGGTCAAGCAATGGAAAGTGTCTTCCCACCCGGAGTACCGTTGACTGATCAAGAAAAATGCAATATTTGTTATTTGGCGTTTCCGGATTCCAATTCAGGATGTATGGGGGACACCCAGTTTCATGTGCGGCTTCGCTCATTCATGTCCTTGACACCACAACAACTTGCATACAACGAAGATAGCGTGCCCACACTTCGCGCTGATTTAACACATTACTGGGGCTTCGTCTACTTTAGACAGGTCAAGGACTCTTCGTTACCAAGAGGTTACTTCCAAAAGAGCATAATCCTGCTGAGCCGACTGCCTTTCATCAATTTGTTCTACAAAGTTATTCAACTCATAGCTCCAAAACACTTCGAAGATGGTGAAAGTAGCTTGGAAGCTGCCTGTCATGATATAAATAGATGGCCTTCATTGAAGGCGGGCCAAAATGTACTGCTGCCAGTGTTGGGCACTGTGTTTCAGTCATACATTCCTAATCAACAAACTGGAAAAATTGTAAGGTCAGACATTGCAGAACAAATTCAATCACACAATGTACCTCATGTTGTTGCCTCTTTACAGGATGTTAATGTTTTTGATGCCTTATCTAGCTTAATCTCACATTTACATTTACTGTGGGAATTGGTTTTGACTGCTGAGCCAATTGTAGTGATGGCTAGCTCGCCAACCGAATGCTCTGCGTTGGTCCAAGCATTGACAAATTTAATCCAACCTCTCCCATATTCAGCAGAGTATAGACCATATTTCACAATACATGACAGTGAATTCAGAGAGTTCACAAGGAAACAATTCAACCCCCCCTGTGTAATACTGGGTGTGACTAATCCATTCTTCACAAAAACACTGCAACACTGGCCCCACACCATAAAACTTGGTGACGTCACTTCTATAAAAACGAAGCTGAAAAAAATTGGTAACTTGAAACTACTTGACACTGCTCCAGGTGTATACACTCAGTACAAAGCATTCTTAGAAAAAGATAAAGCAATTATAAAAAAACTTCACAACGGAATCCGTACTGAAAGGCCTTCGGAAGTTCAGACTGCAATGGTCAAAAGACATCTACTAGAACTGACTCAAAGCTTTATGATTCCTCTAGAGAGGTATATGGCATCACTCATGCCATTACAGAAAAACATTTCACCATTTAGAGCACCTCCTATACCCAATCCGTTCAACCCGGAAGACTTCTTTGCTATGTTACAGCAATCAGGACCTCAATTAACGACTGGCATTAAAGGTGACTGGATAGGATTGTACAGAAACTTTTTCAAAACCCCAAACTTCAGTGCTTGGTTTCACGAGAGACACAATAATTTGACAAACAAGCTACAAGCACTGCAGCTTGAAGCTTTAGCTGGTAGTGACCTGAAGCAATGGTCTAAAGGGAAGAAAGAAATTGAAATTGTTGATATGGTCCTCAAACTCAGGGAGGTGTTGAAAAGTAGTCCCCCAGTGCCTGACAATACAAAGACGTTGTTGGCAAGACGTCTTGATGATCTGAACTGTGTTTTGCCTGATGACATGAAATCTATATTGAATGCAGCCTCGTGA
Protein
MASSIHNYGVEVSAEEKEFQNVWNRFSEWLHCICVVTFDLELGQAMESVFPPGVPLTDQEKCNICYLAFPDSNSGCMGDTQFHVRLRSFMSLTPQQLAYNEDSVPTLRADLTHYWGFVYFRQVKDSSLPRGYFQKSIILLSRLPFINLFYKVIQLIAPKHFEDGESSLEAACHDINRWPSLKAGQNVLLPVLGTVFQSYIPNQQTGKIVRSDIAEQIQSHNVPHVVASLQDVNVFDALSSLISHLHLLWELVLTAEPIVVMASSPTECSALVQALTNLIQPLPYSAEYRPYFTIHDSEFREFTRKQFNPPCVILGVTNPFFTKTLQHWPHTIKLGDVTSIKTKLKKIGNLKLLDTAPGVYTQYKAFLEKDKAIIKKLHNGIRTERPSEVQTAMVKRHLLELTQSFMIPLERYMASLMPLQKNISPFRAPPIPNPFNPEDFFAMLQQSGPQLTTGIKGDWIGLYRNFFKTPNFSAWFHERHNNLTNKLQALQLEALAGSDLKQWSKGKKEIEIVDMVLKLREVLKSSPPVPDNTKTLLARRLDDLNCVLPDDMKSILNAAS

Summary

Similarity
Belongs to the heat shock protein 70 family.
EMBL
BABH01032622    ODYU01011631    SOQ57495.1    NWSH01000561    PCG75646.1    KZ150212    + More
PZC72163.1    JTDY01002701    KOB70889.1    KQ459838    KPJ19705.1    KQ459460    KPJ00815.1    AGBW02012739    OWR44520.1    KK852539    KDR21781.1    KQ435794    KOX73747.1    GL443836    EFN61587.1    GEDC01004387    JAS32911.1    QOIP01000004    RLU23230.1    KQ978219    KYM96411.1    GL762897    EFZ20569.1    DS235059    EEB11127.1    KQ976500    KYM83261.1    KQ981673    KYN38289.1    ADTU01011209    KK107372    EZA51746.1    KQ980581    KYN15351.1    GL448504    EFN84540.1    GL888932    EGI57265.1    GFDL01010618    JAV24427.1    GFDL01010732    JAV24313.1    KQ983227    KYQ46470.1    GFDL01010933    JAV24112.1    LBMM01001848    KMQ95653.1    GEZM01013114    JAV92742.1    KQ971307    EFA11536.1    JH431613    KQ414775    KOC61307.1    DS233195    EDS28591.1    JXUM01058934    KQ562026    KXJ76872.1    GEZM01013115    JAV92741.1    GDUN01001052    JAN94867.1    NNAY01000821    OXU26335.1    GGMS01014709    MBY83912.1    ABLF02033596    KK854831    PTY19087.1    RQTK01000228    RUS83833.1    LJIG01022709    KRT79118.1    KZ288324    PBC28095.1    NEDP02004420    OWF45695.1    GBHO01022308    GBRD01011615    GBRD01008524    JAG21296.1    JAG54209.1    UFQS01001027    UFQT01001027    SSX08621.1    SSX28537.1    UFQS01000371    UFQT01000371    SSX03260.1    SSX23626.1    GEDC01024887    JAS12411.1    KB203534    ESO84336.1    JH816704    EKC31765.1    GBBI01002821    JAC15891.1    GFTR01007121    JAW09305.1    ACPB03016234    AAGJ04114875    APGK01047232    KB741077    KB631792    ENN74252.1    ERL86121.1    AMQN01001815    KB305766    ELU00735.1    NEVH01023955    PNF17823.1    GDRN01100812    GDRN01100811    JAI58495.1    LJIJ01001303    ODM92184.1    DS469523    EDO46962.1    GANP01002939    JAB81529.1    LSMT01000283    PFX21300.1    AHAT01023625    HAEI01000345    HAEH01007472    SBR71330.1    HAEF01003116    SBR40498.1    HAEG01011855    SBR90830.1    GFAC01002607    JAT96581.1    GEBQ01026606    JAT13371.1    HADY01019312    SBP57797.1    HAEH01020538    SBS10950.1    HAEF01012610    HAEG01000516    SBR63720.1    GEFH01002336    JAP66245.1    GCES01147828    JAQ38494.1    HAEA01009474    SBQ37954.1    HADZ01000544    SBP64485.1   
Pfam
PF09794   Avl9        + More
PF00012   HSP70
Interpro
IPR037516   Tripartite_DENN        + More
IPR024224   DENND6       
IPR018307   ABL9/DENND6_dom       
IPR018181   Heat_shock_70_CS       
IPR013126   Hsp_70_fam       
IPR029047   HSP70_peptide-bd_sf       
IPR001194   cDENN_dom       
SUPFAM
SSF100920   SSF100920       
Gene 3D

Ontologies

Topology

Length:
560
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0949299999999999
Exp number, first 60 AAs:
0.00742
Total prob of N-in:
0.00573
outside
1  -  560
 
 

Population Genetic Test Statistics

Pi
390.375059
Theta
224.954585
Tajima's D
1.876466
CLR
0.607908
CSRT
0.862006899655017
Interpretation
Uncertain
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