Silkworm Genome Informatics Database

Gene

KWMTBOMO12079

Pre Gene Modal

BGIBMGA004332

Annotation

PREDICTED:_uncharacterized_protein_LOC106718636_[Papilio_machaon]

Location

Bomo_Chr20(+):6906667-6909463 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Nuclear Reliability : 4.762

CDS

ATGCCATCAAGTTCCCGGTTGAAGTGCCATTTTGGCTGTGAAATCGATGGTCCATTGCATCGATTTCCTAAACCACAATACCCACATTTAACAAAATTTAATTCTTGGAAATCTGTCCTTGCTAAAGATGTTCAAGATAAAGGGGACATTTACATCTACAACCAAATCAGAATTTGCGATCGGCACTTTGAAAAATGTTATCATTCACAAAGTCACAGACTTATAGCTAACGCAGTACCAACACTAAACATTGGTTTTTCTCAGCAGCAACCTGTAGAAATTGAGGTTGATGAAAATATGCCGACTCTAATGCAGCCATTGACTTCTGCCCAAATGACAAAAGTGCAACAGTCATCACACAGTTTCCCAAATCTTACTGTTAGTATGCCATCAGCAACTAGAAATGTCGCCAATAAAGCTGAAACAAATCAATCCAGACGAGATAGTGAAGATCAAGATTCGGCCGATACCAGTTCTCAACAGGTTGAAAGTCTAAGAACACTCCAGTCTACCGGTGCTCCCATAAAGAAACCTAAACAAGAGCATAGGTGTCACACTTGCGAGGAAGAAATCTCCGATTGGGACGAGCTAGAAAAGCACCTAATCCAACACGTTTCCCTACCGTCTACCGGAATTGAGGAGCTGCTTTTAGAGTATAGCCCGCCCTCTGGGAACGAAAACTGGTCAGATGAAGATGAGGAACCCGCAGCAGTGAACAAATTGAGTGGACTAGGTTTTACTATAAAGAAGAACCGTATGAGAATAAAGCAAGAGCCTGGTTACAATGCTACTCCGGAGAGCGATGACCTCCAAAACATTAACAATCGCCATCAAATCAAACTAGAACAAACCATGGAGACCGTGAAGGTGAAACAAGAGGTCGAAAACGACGAATATCAACCGCAACAGAATTTTCATTTATTCTCTGATCAGATAAAGACAGAGAGAAGCGTCACTCCTCTTGACAGGAACAATTGTTACACACCATTAATAGCAATTGTCAAAGACGATCCCGACGGATCCGCAAACCAGCCCTCTCAACCGATATTTTCGGACAGTAAAACTGCACCCACAAGTGCGACGGTGCCACTACTTCCCGTCACGAAAATTGAAGATACCGGACCAACGTTTATAGAGATTAATATCGATTCTAATGATAAGGACGGAGATGATTGTGTTGGTTCAACGACGCCGGCGCCCGATATTAAACCGATCGTACCTAAAATCGAAAACGCACCGCTCGTGTCCTGTCCCTCGATCTCGCAGTCGTTTCAAAGCTCTCAGCCCAGTTACAATAACTCTGGGCATTTATCGCCGAGAATAACAACGGCTCCGTCTTTAGAGAAACAACACAATTTCAACTGGAACGCGCCGGATTCGAAACCGCACCTGAACTCCATGAACATCTTGGATAATACGGCAGATGAAATAAATTACAGATAA

Protein

MPSSSRLKCHFGCEIDGPLHRFPKPQYPHLTKFNSWKSVLAKDVQDKGDIYIYNQIRICDRHFEKCYHSQSHRLIANAVPTLNIGFSQQQPVEIEVDENMPTLMQPLTSAQMTKVQQSSHSFPNLTVSMPSATRNVANKAETNQSRRDSEDQDSADTSSQQVESLRTLQSTGAPIKKPKQEHRCHTCEEEISDWDELEKHLIQHVSLPSTGIEELLLEYSPPSGNENWSDEDEEPAAVNKLSGLGFTIKKNRMRIKQEPGYNATPESDDLQNINNRHQIKLEQTMETVKVKQEVENDEYQPQQNFHLFSDQIKTERSVTPLDRNNCYTPLIAIVKDDPDGSANQPSQPIFSDSKTAPTSATVPLLPVTKIEDTGPTFIEINIDSNDKDGDDCVGSTTPAPDIKPIVPKIENAPLVSCPSISQSFQSSQPSYNNSGHLSPRITTAPSLEKQHNFNWNAPDSKPHLNSMNILDNTADEINYR

Uniprot

H9J493

Pubmed

19121390

EMBL

BABH01032602

Proteomes

UP000005204

PRIDE

H9J493

Interpro

IPR006612 THAP_Znf + More
IPR013087 Znf_C2H2_type

ProteinModelPortal

H9J493

KEGG

101739869 no KO assigned | (RefSeq) uncharacterized LOC101739869

GO

GO:0003677 GO:0003676 GO:0046872 GO:0003743 GO:0005737 GO:0006432 GO:0000049 GO:0000287 GO:0008033 GO:0016787

Length:

480

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00381

outside

1 - 480

Pi

164.034125

Theta

204.494189

Tajima's D

-1.646557

CLR

4540.900955

CSRT

0.0452477376131193

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics