Gene

KWMTBOMO12063

Pre Gene Modal

BGIBMGA004298

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_RNF123-like_[Bombyx_mori]

Location

Bomo_Chr20(-):6592158-6594476      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.249

CDS

ATGGACACAGGAGTTGGAGACACAGCTCATTCGTACGCGTACGACGGGAGCAGAGTCAGAAAATGGAATGTCGCGACGTCCGCTTACGGTCAACCGTGGTTATCCGGTGACGTCATAGGGGCGTGTATAGACTTGGATAGAGGTCTTATGGAGTATTACAGGAACGGTGTGTCGCTGGGCGTGGCCTTCGACAAGGTGACCCACGGATCCGGCCTCGCTTATTTCCCGGCCGTCTCCTTAGCTATGCAGGAACATTTGTACGCCAATTTCGGACACGTTCCGTTCGTGTTTCCCGTGGAAGGTTTTGCGCCCATACAAGCACCACCGACGCGTGAATGCATGAAATTTGCATTACTATTCAAATCCTTGGACGCGTTAGTGGATGAACTATCGCGGCCTTCGGATTTGAAGTCTGGCGTTACGGCTAAGACTAGCAAGGTAAGATTAGCTAAACTTTTTATTTATTGCATAAATGGGTGGACGAGCTCATAG

Protein

MDTGVGDTAHSYAYDGSRVRKWNVATSAYGQPWLSGDVIGACIDLDRGLMEYYRNGVSLGVAFDKVTHGSGLAYFPAVSLAMQEHLYANFGHVPFVFPVEGFAPIQAPPTRECMKFALLFKSLDALVDELSRPSDLKSGVTAKTSKVRLAKLFIYCINGWTSS

Uniprot

H9J459   A0A2A4JUI2   A0A2W1B7E9   A0A2H1W864   A0A194QQ69   A0A194Q638   + More
A0A0L7LDQ9   A0A0J7KVZ2   E2BUD9   A0A2A3E9Z9   E2AXN8   A0A088A2B9   A0A3L8D5W7   A0A026VY39   A0A232ETI7   A0A195ETE2   F4W7P7   A0A1S3D5W1   A0A195AT44   A0A158NPK7   A0A151WJ48   A0A151IMT1   K7IRA5   A0A195ELB7   K1Q5Z5   A0A067RFY2   A0A2P8XDX7   A0A087U4A8   A0A2R5LIJ3   A0A2L2YC53   A0A2L2YC59   T1IK83   A0A1Z5LCS5   A0A0N0BH43   A0A226DAC8   A0A2B4RVF9   A0A2C9L0K3   A0A2J7R3K7   A0A0C9QUD1   A0A293LLR8   T1DCJ6   A0A210PFS7   A7RTP5   A0A1B6D141   A0A1B6BWP9   B4LZW6   A0A2J7R3I7   A0A1J1HYZ4   T1L3P5   A0A1I8HNW1   A0A267EZ75   A0A1I8I723   A0A267DV69   A0A1I8HT26   A0A1B6IKL3   A0A2J7R3K0   A0A1B6HF32   A0A218UQG7   A0A199VVF3   U3K320   A0A1B6ES13   A0A0L7QZT7   G1MTR0   A0A091GZK4   U3IIT4   K7GAR1   A0A3B3SE94   A0A3Q2U5K0   A0A1V4K8Q6   G1KGZ0   A0A060YGT6   A0A1B6LIW7   A0A1B6M9A9   A0A1S3KH47   T2MCA6   M7C0S5   A0A1S3X6K7   A0A1R3K616   A0A091JE51   A0A1U7X7J7  

Pubmed

19121390    28756777    26354079    26227816    20798317    30249741    + More
24508170    28648823    21719571    21347285    20075255    22992520    24845553    29403074    26561354    28528879    15562597    28812685    17615350    17994087    26392545    27374615    20838655    23749191    17381049    29240929    15592404    24755649    26383154    24065732    23624526    24807620    23773524   

EMBL

BABH01032567    BABH01032568    NWSH01000552    PCG75697.1    KZ150399    PZC71021.1    + More
ODYU01006952    SOQ49271.1    KQ461181    KPJ07658.1    KQ459460    KPJ00829.1    JTDY01001621    KOB73326.1    LBMM01002559    KMQ94657.1    GL450640    EFN80666.1    KZ288311    PBC28540.1    GL443628    EFN61784.1    QOIP01000012    RLU15862.1    KK107599    EZA48585.1    NNAY01002280    OXU21637.1    KQ981986    KYN31177.1    GL887844    EGI69920.1    KQ976745    KYM75366.1    ADTU01022570    ADTU01022571    ADTU01022572    ADTU01022573    KQ983049    KYQ47830.1    KQ977026    KYN06241.1    KQ978730    KYN29013.1    JH816297    EKC32027.1    KK852486    KDR22786.1    PYGN01002604    PSN30203.1    KK118079    KFM72197.1    GGLE01005021    MBY09147.1    IAAA01018209    LAA05746.1    IAAA01018210    IAAA01018211    LAA05752.1    JH430443    GFJQ02001952    JAW05018.1    KQ435762    KOX75498.1    LNIX01000028    OXA41687.1    LSMT01000289    PFX21156.1    NEVH01007819    PNF35406.1    GBYB01007359    GBYB01013038    JAG77126.1    JAG82805.1    GFWV01002915    MAA27645.1    GAKT01000022    JAA93040.1    NEDP02076733    OWF35317.1    DS469538    EDO45063.1    GEDC01017912    JAS19386.1    GEDC01031581    JAS05717.1    CH940650    EDW67194.1    PNF35404.1    CVRI01000037    CRK93179.1    CAEY01001042    NIVC01001531    PAA66793.1    NIVC01003217    PAA52554.1    GECU01020245    JAS87461.1    PNF35403.1    GECU01034461    JAS73245.1    MUZQ01000178    OWK56015.1    LSRQ01000777    OAY80911.1    AGTO01011745    GECZ01029101    JAS40668.1    KQ414673    KOC64134.1    KL517779    KFO88609.1    ADON01127469    ADON01127470    ADON01127471    ADON01127472    ADON01127473    AGCU01049468    AGCU01049469    AGCU01049470    AGCU01049471    AADN05000356    LSYS01004144    OPJ80741.1    FR908536    CDQ88320.1    GEBQ01016624    GEBQ01016350    JAT23353.1    JAT23627.1    GEBQ01017700    GEBQ01007543    JAT22277.1    JAT32434.1    HAAD01003298    CDG69530.1    KB534465    EMP33972.1    AWUE01014619    OMP02521.1    KK500744    KFP10016.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    UP000036403    + More
UP000008237    UP000242457    UP000000311    UP000005203    UP000279307    UP000053097    UP000215335    UP000078541    UP000007755    UP000079169    UP000078540    UP000005205    UP000075809    UP000078542    UP000002358    UP000078492    UP000005408    UP000027135    UP000245037    UP000054359    UP000053105    UP000198287    UP000225706    UP000076420    UP000235965    UP000242188    UP000001593    UP000008792    UP000183832    UP000015104    UP000095280    UP000215902    UP000197619    UP000092600    UP000016665    UP000053825    UP000001645    UP000016666    UP000007267    UP000261540    UP000000539    UP000190648    UP000001646    UP000193380    UP000085678    UP000031443    UP000084051    UP000187203    UP000053119    UP000189701   

PRIDE

H9J459   

Pfam

PF00622   SPRY        + More
PF10408   Ufd2P_core

Interpro

IPR003877   SPRY_dom        + More
IPR013320   ConA-like_dom_sf       
IPR001870   B30.2/SPRY       
IPR001841   Znf_RING       
IPR013083   Znf_RING/FYVE/PHD       
IPR035773   SPRY_RNF123       
IPR016024   ARM-type_fold       
IPR023190   Pser_Pase_dom_2       
IPR036412   HAD-like_sf       
IPR023214   HAD_sf       
IPR019786   Zinc_finger_PHD-type_CS       
IPR034732   EPHD       
IPR042013   PHF7/G2E3_ePHD       
IPR001965   Znf_PHD       
IPR019474   Ub_conjug_fac_E4_core       

SUPFAM

SSF49899   SSF49899        + More
SSF48371   SSF48371       
SSF56784   SSF56784       

Gene 3D

3.30.40.10     1.10.150.210     3.40.50.1000    

CDD

cd12882  SPRY_RNF123
cd15669  ePHD_PHF7_G2E3_like

ProteinModelPortal

H9J459   A0A2A4JUI2   A0A2W1B7E9   A0A2H1W864   A0A194QQ69   A0A194Q638   + More
A0A0L7LDQ9   A0A0J7KVZ2   E2BUD9   A0A2A3E9Z9   E2AXN8   A0A088A2B9   A0A3L8D5W7   A0A026VY39   A0A232ETI7   A0A195ETE2   F4W7P7   A0A1S3D5W1   A0A195AT44   A0A158NPK7   A0A151WJ48   A0A151IMT1   K7IRA5   A0A195ELB7   K1Q5Z5   A0A067RFY2   A0A2P8XDX7   A0A087U4A8   A0A2R5LIJ3   A0A2L2YC53   A0A2L2YC59   T1IK83   A0A1Z5LCS5   A0A0N0BH43   A0A226DAC8   A0A2B4RVF9   A0A2C9L0K3   A0A2J7R3K7   A0A0C9QUD1   A0A293LLR8   T1DCJ6   A0A210PFS7   A7RTP5   A0A1B6D141   A0A1B6BWP9   B4LZW6   A0A2J7R3I7   A0A1J1HYZ4   T1L3P5   A0A1I8HNW1   A0A267EZ75   A0A1I8I723   A0A267DV69   A0A1I8HT26   A0A1B6IKL3   A0A2J7R3K0   A0A1B6HF32   A0A218UQG7   A0A199VVF3   U3K320   A0A1B6ES13   A0A0L7QZT7   G1MTR0   A0A091GZK4   U3IIT4   K7GAR1   A0A3B3SE94   A0A3Q2U5K0   A0A1V4K8Q6   G1KGZ0   A0A060YGT6   A0A1B6LIW7   A0A1B6M9A9   A0A1S3KH47   T2MCA6   M7C0S5   A0A1S3X6K7   A0A1R3K616   A0A091JE51   A0A1U7X7J7  

PDB

5JIA     E-value=9.53075e-09,     Score=138

KEGG

101743881    K12169 Kip1 ubiquitination-promoting complex protein 1 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein

GO

GO:0046872   GO:0016874   GO:0006564   GO:0004647   GO:0051603   GO:0004842   GO:0005737   GO:0005829   GO:0031965   GO:0034450   GO:0000151   GO:0006511   GO:0005515   GO:0008270   GO:0003743   GO:0006432   GO:0000049   GO:0000287   GO:0008033   GO:0003676   GO:0016787  

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.34299

Exp number, first 60 AAs:

0.04833

Total prob of N-in:

0.16240

outside

1  -  163

 

 

Pi

296.643962

Theta

190.482988

Tajima's D

1.725371

CLR

0

CSRT

0.831608419579021

Interpretation

Uncertain