Gene
KWMTBOMO12058
Annotation
PREDICTED:_collagen_alpha-1(IX)_chain-like_[Papilio_xuthus]
Location in the cell
Extracellular Reliability : 2.61
Sequence
CDS
ATGTTTTTCTGGTTACCATACGTCTTGGTCTTCCTCTCAATTCTCTTCTCATACAGCAACGGGCAAGCAGATAATTTCACGACAATGGCTCCGTTCGCGAGATCCTTTTGCTCTCCAAATTCGAAAGACTCAGACTTCCAGACGGTGGATCTGATAGCCGTATATCGACTGGATAGATCGGACACCACCGGTGTGACCCTAGTTCAGGGGTCCCAGGATCTTCAAATGGCGTATAGAATTGGAGGGGGAGCTAATCTAACTTTACCTCTAAAAGAAGTGTTCCCGGGTGGTCTTCCGAACCGGTTCAGTGTGGAGGGAACCTTCAATGCTCGCGGACAACGAAGGCCGTGGAGTCTTCTGCGAGCACGTTCAAATAACGTGCTGTTTTCTCTCATTTTAATGCCGGAACCAAGGAAAGTGGCGGTCCTAGTCCAGGGTTCTAGGGCCGTGTTCAAGAGTCCAGAGTTATTTACTACGGGATGGCACAAACTACACGTGGCTGTCGCGAATCGATCGGTTCATATAGCAGTCGATTGTGTTGAGTTGAATCCAGTGAACATCTCCGCTTACGACTTCAGCAATGCCACCTCACTGACGATTGTCTCAAACGATGACGGCACGCCGGCACCGATCGATCTTCAGTGGCTCTCGTTGAGTTGCGACCGCTACGTTCTGAAGGAAGATAGCTGTGAGGAGATTGATAATCCAAACTACCTGATAGCAACTTCAGCGCCGCCCTTTGCTTTCGACCCATCGTCCAGAGAAATTCCTTCGCTAAACACGACTTGCAATGTGACGTGTCCAGAAGGTCCCATGGGCCCTCCTGGACCTACAGGCGAACAGGGCGTGAGGGGTCTCCCAGGACTACCGGGCTTTAGAGGCGAGAAAGGCGAAATTGGGCCCATTGGCCCAGCCGGCCCGAAAGGTGACAAAGGCGAAGTTGGGCCGCCCGGTTTAGCCGTTAATGTAACTGGTACAGGAGTGAAGGGTGAACAAGGACCACCAGGCCCCAGGGGTTATAAAGGCGATAAAGGCGAAACTGGATCGAAAGGTGATACCGGCGATCCAGGTCCCGTTGGGTTTTCTGGTATACCCGGAGTCGATGGGAAAGACGGTATTCCTGGGTCACCAGGCCCAATCGGTCCTCCTGGGATACCGGGACCTCGTGGACCACCCGGACCATTGACCAATATCAACGCTTCTCTAATACAAGGTGCTAAAGGCGAAAGGGGGTCACCTGGTCGACCAGGGAGAGACGGTGGTCCCGGACCCGTCGGACCTCCTGGAAAGGATGGCGAAAGGGGTCTACCAGGGCCGGAGGGTGCCCCTGGTGCAGCTGGTCTCCCCGCTCCCAGTGGGCCGCGCGGTCCCCCTGGGGAGAGGGGCCCTGAAGGACCACAGGGTCCCGAGGGTCCTTCAGGTAAACCTGGAACTCCAGGCCCGCCAGGTGTACCTGCCCCCTTAATCACTGCAGCCAGTATACCGGGTCCTCCTGGACCGGCGGGGGTGCGCGGAGAGAAAGGGGATCCAGGGTTACCGGGTCTTCCAGGGCGGGATGGGCTTGACGGAATTCCAGGTATACCAGGGCATGCTGGCCCGCCCGGGGCTCCCGGAGTCAACACCGTCTCAGTACAAACACCGTCGATGTCGGAAAATGACGTGAGGAACATTTGCGAAAGCATCGTCAGAGAACGACTGAACGAGCTATCAGCAAGTCTAACGGCACCCACCCAGACCGTGGTTACAAAGCGTGGCCCTCCAGGAAGACCTGGTCTTCCTGGGCCTCCGGGTAAGAATGGCACATCACTACATATTATAAAACAAAGTCGCTTTCTCTGTCCCTAA
Protein
MFFWLPYVLVFLSILFSYSNGQADNFTTMAPFARSFCSPNSKDSDFQTVDLIAVYRLDRSDTTGVTLVQGSQDLQMAYRIGGGANLTLPLKEVFPGGLPNRFSVEGTFNARGQRRPWSLLRARSNNVLFSLILMPEPRKVAVLVQGSRAVFKSPELFTTGWHKLHVAVANRSVHIAVDCVELNPVNISAYDFSNATSLTIVSNDDGTPAPIDLQWLSLSCDRYVLKEDSCEEIDNPNYLIATSAPPFAFDPSSREIPSLNTTCNVTCPEGPMGPPGPTGEQGVRGLPGLPGFRGEKGEIGPIGPAGPKGDKGEVGPPGLAVNVTGTGVKGEQGPPGPRGYKGDKGETGSKGDTGDPGPVGFSGIPGVDGKDGIPGSPGPIGPPGIPGPRGPPGPLTNINASLIQGAKGERGSPGRPGRDGGPGPVGPPGKDGERGLPGPEGAPGAAGLPAPSGPRGPPGERGPEGPQGPEGPSGKPGTPGPPGVPAPLITAASIPGPPGPAGVRGEKGDPGLPGLPGRDGLDGIPGIPGHAGPPGAPGVNTVSVQTPSMSENDVRNICESIVRERLNELSASLTAPTQTVVTKRGPPGRPGLPGPPGKNGTSLHIIKQSRFLCP
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF01391 Collagen
SUPFAM
SSF49899
SSF49899
ProteinModelPortal
PDB
2UUR
E-value=1.35853e-12,
Score=179
Ontologies
GO
Topology
SignalP
Position: 1 - 21,
Likelihood: 0.990803
Length:
614
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.87614999999999
Exp number, first 60 AAs:
6.86931
Total prob of N-in:
0.35015
outside
1 - 614
Population Genetic Test Statistics
Pi
197.810142
Theta
176.088172
Tajima's D
0.195284
CLR
1.442295
CSRT
0.416629168541573
Interpretation
Uncertain
