Gene

KWMTBOMO12042

Pre Gene Modal

BGIBMGA004316

Annotation

PREDICTED:_uncharacterized_protein_LOC101734835_isoform_X1_[Xenopus_tropicalis]

Location

Bomo_Chr20(+):6221250-6222394      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.701

CDS

ATGAACTATGACGACGATACTGACTTAACAGCTGGTCGAAGAAGCTTGTCACACGAAGCAGAAGGCCAAAAAATAGAGCATGAATTTATAAAACTGTATCATAAACTTCCATTACTGTGGGATGCGAAACATCCGGACTACAACAACAAATACAAGAGAAATGCAGCTTTGGATAAATTATTAATTGTTTTGAAACAATTGAATCATCTCGCCACAAGATATAATGTGCGGCAGAAAATAAACATATTAAGATCTTGTTATAGAAAAGATTTGCGAAGACATTTGGCATCGAAAGTTATAGGCGCAGACGGAGAAGTTTCTTACGAACATATTCCTACGTCTTGGAAATTTCATAAACTGAGATTTCTTGACGGAAATGATAATAATACTGAGGAATACAAAAACGAAATTACACAGGTTAACATTCAAGACAGTGAATATCATGATAACAGCAACAATAGCAACCAAAGAAGTGAGGAGTCATCTGGACAAGAGTGCCATGATATAGAAACTGATCCTGACCTAAGTTTAGAGTCATTAAAAACATTTGAAGACAAAACATATATACGGAAAAGCAGTCATAAAAGAATAAAATTAGAGTTAAATAAAGAAGGATACTATCCACCAGACAAGGAGGAGCCTTTAGACAGAGAATTTAATGCAATTGGTGCTAATGTTGCATGTAAACTGAAAAGAATGAATCAGCAACAGAGGTATCATGCGGAACTGCTCATAAACAAAGTATTAATAAAAGGGTTAAAGGATAGTTTAACGGATGACTCAGATATAACTGATGTGTGGAATGTATAG

Protein

MNYDDDTDLTAGRRSLSHEAEGQKIEHEFIKLYHKLPLLWDAKHPDYNNKYKRNAALDKLLIVLKQLNHLATRYNVRQKINILRSCYRKDLRRHLASKVIGADGEVSYEHIPTSWKFHKLRFLDGNDNNTEEYKNEITQVNIQDSEYHDNSNNSNQRSEESSGQECHDIETDPDLSLESLKTFEDKTYIRKSSHKRIKLELNKEGYYPPDKEEPLDREFNAIGANVACKLKRMNQQQRYHAELLINKVLIKGLKDSLTDDSDITDVWNV

Uniprot

H9J477   A0A2H1WFE3   A0A1B6FGT9   A0A2G9Q4E7   A0A2G9Q8F3   A0A2A4IU44   + More
A0A2G9RYI4   A0A2G9Q6E2   A0A1L8GWJ4   A0A2J7PQN7   A0A2G9QD53   A0A2G9QBK3   A0A2G9QBK9   A0A2G9NKI4   A0A2J7PQQ4   A0A2J7PQN9   A0A2J7PQP6   A0A2J7PQS9   A7UVK9   A0A2G9Q8L9   A0A182X0A5   A0A182HZZ5   A0A2G9Q1M6   A0A2G9RND9   A0A182V535   A0A2G9QA64   A0A1Y1LBH9   A0A194QF80   A0A2G9RB34   A0A2G9Q7H0   A0A2G9P2U8   A0A2G9QAV8   A0A2G9RAS9   A0A2G9RB09   A0A0L7K429   A0A2G9Q998   A0A2G9R6S6   A0A1L8FUC2   A0A0P4W4G4   A0A1L8FQ29   A0A1L8HUH7   A0A182N428   A0A2G9Q6P4   A0A182F3N3   A0A2G9RRL6   A0A182VLV3   A0A2G9REG2   A0A2G9Q7Q1   A0A2G9Q288   A0A1W4VJM9   A0A182HC94   A0A2G9QBH9   A0A2G9Q372   A0A182VZ77   A0A2G9QB66   A0A2G9RN16   A0A0L7LPJ2   A0A2G9Q3H9   A0A2G9Q6H7   A0A2G9Q6I3   A0A154PRU3  

Pubmed

19121390    27762356    12364791    14747013    17210077    28004739    + More
26354079    26227816    26483478   

EMBL

BABH01032520    ODYU01008315    SOQ51798.1    GECZ01020340    JAS49429.1    KZ369158    + More
PIO10486.1    KZ060738    PIO11877.1    NWSH01007285    PCG63016.1    KV929067    PIO32968.1    KZ368960    PIO10721.1    CM004470    OCT88204.1    NEVH01022635    PNF18654.1    KZ060000    PIO12993.1    PIO12992.1    PIO12994.1    KV923293    PIN91609.1    PNF18657.1    PNF18653.1    PNF18659.1    PNF18656.1    AAAB01008987    EDO63214.2    KZ061110    PIO11393.1    APCN01002026    KZ370017    PIO09487.1    KV937032    PIO28713.1    KZ060319    PIO12470.1    GEZM01062484    GEZM01062477    JAV69700.1    KQ459053    KPJ04069.1    KV951138    PIO25087.1    KZ060992    PIO11552.1    KV923080    PIN97302.1    KZ060161    PIO12720.1    KV950108    PIO24959.1    PIO25088.1    JTDY01012975    KOB52207.1    KZ060937    PIO11623.1    KV968540    PIO23562.1    CM004476    OCT75200.1    GDRN01072987    JAI63459.1    CM004477    OCT73694.1    CM004466    OCT99755.1    KZ061197    PIO11274.1    KV936151    PIO30507.1    KV950757    PIO26234.1    PIO11624.1    KZ369825    PIO09702.1    JXUM01126919    KQ567125    KXJ69611.1    KZ060018    PIO12960.1    KZ369901    PIO09621.1    KZ060090    PIO12837.1    KV936702    PIO28641.1    JTDY01000411    KOB77314.1    KZ369436    PIO10169.1    KZ061249    PIO11208.1    PIO11207.1    KQ435094    KZC14622.1   

Proteomes

UP000005204    UP000218220    UP000186698    UP000235965    UP000007062    UP000076407    + More
UP000075840    UP000075903    UP000053268    UP000037510    UP000075884    UP000069272    UP000192221    UP000069940    UP000249989    UP000075920    UP000076502   

PRIDE

H9J477   

Pfam

PF10545   MADF_DNA_bdg

Interpro

IPR006578   MADF-dom       

ProteinModelPortal

H9J477   A0A2H1WFE3   A0A1B6FGT9   A0A2G9Q4E7   A0A2G9Q8F3   A0A2A4IU44   + More
A0A2G9RYI4   A0A2G9Q6E2   A0A1L8GWJ4   A0A2J7PQN7   A0A2G9QD53   A0A2G9QBK3   A0A2G9QBK9   A0A2G9NKI4   A0A2J7PQQ4   A0A2J7PQN9   A0A2J7PQP6   A0A2J7PQS9   A7UVK9   A0A2G9Q8L9   A0A182X0A5   A0A182HZZ5   A0A2G9Q1M6   A0A2G9RND9   A0A182V535   A0A2G9QA64   A0A1Y1LBH9   A0A194QF80   A0A2G9RB34   A0A2G9Q7H0   A0A2G9P2U8   A0A2G9QAV8   A0A2G9RAS9   A0A2G9RB09   A0A0L7K429   A0A2G9Q998   A0A2G9R6S6   A0A1L8FUC2   A0A0P4W4G4   A0A1L8FQ29   A0A1L8HUH7   A0A182N428   A0A2G9Q6P4   A0A182F3N3   A0A2G9RRL6   A0A182VLV3   A0A2G9REG2   A0A2G9Q7Q1   A0A2G9Q288   A0A1W4VJM9   A0A182HC94   A0A2G9QBH9   A0A2G9Q372   A0A182VZ77   A0A2G9QB66   A0A2G9RN16   A0A0L7LPJ2   A0A2G9Q3H9   A0A2G9Q6H7   A0A2G9Q6I3   A0A154PRU3  

KEGG

101737294    no KO assigned | (RefSeq) uncharacterized LOC101737294

GO

Length:

269

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0023

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.08689

outside

1  -  269

 

 

Pi

179.34611

Theta

190.097309

Tajima's D

-0.177984

CLR

0.082228

CSRT

0.31788410579471

Interpretation

Uncertain