SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12038  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004309
Annotation
PREDICTED:_protein_DEK_isoform_X1_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.933
 

Sequence

CDS
ATGTCGGGTGATACCGATAAAGCAAAAATCAGTGACAATCAGGATGAAGACAAGAAATCCAGTACTGGCGATGGTCAAACAACTGAAGACGAGTCATCCCAGGACTCGAAGGGTGAGTCGCTGCGGTTTCAAGATTCTGAGGCCCAAGGTAACGCTGATGTAGATCAACCAGATGCAAAAGAAGAGAATCTAGAAGGTGACGTAAAGACGACAGCCAACGGTAAGGATGACGAGACCGGCGGTGATGACTCCAAAGATGAAAAGGATAAAACCGATAGTGATACTAAAAAGGAGGAGAATGGTGAGACACACGATGAAGATGAAAAAGACGATGTGAAGAGTAATGATAAGGGCGCAAAGAAAGCGCCCCCTAAGAAGAAACCTAAGAAAGAGGTACATTATTCACGATCACTCAACTTTGTCGAATAG
Protein
MSGDTDKAKISDNQDEDKKSSTGDGQTTEDESSQDSKGESLRFQDSEAQGNADVDQPDAKEENLEGDVKTTANGKDDETGGDDSKDEKDKTDSDTKKEENGETHDEDEKDDVKSNDKGAKKAPPKKKPKKEVHYSRSLNFVE

Summary

Pfam
PF08766   DEK_C
Interpro
IPR014876   DEK_C        + More
IPR017956   AT_hook_DNA-bd_motif       

Ontologies

Topology

Length:
142
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.33804
outside
1  -  142
 
 

Population Genetic Test Statistics

Pi
213.720259
Theta
177.429414
Tajima's D
0.864951
CLR
0.013864
CSRT
0.623268836558172
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 VIIVTPDETQEIIITR 96.30 2e-12
26280517 FQCSTVTSDVIR 96.30 2e-12
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