SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12028
Annotation
hypothetical_protein_M514_07281_[Trichuris_suis]
Location in the cell
Nuclear   Reliability : 2.768
 

Sequence

CDS
ATGGAATTTCCAAAACCAGTATACTCCATCAAAACATCAACACCGATTACTCTTAAACAAATACTGGATAAACATTCACAACTCTTTGATGGAAAACTAGGAAAAGTTAACAATTATTACGTAAACATACATGTCAAACCAGAAGCTGAACCGATCCACCTTCCTGCACGGCCTATAAAATTCAGCATGAAAAAGAATATAGAAAGGGAGATAGATCGTCTGATCTCAGAAGGGATAGTGGAAAAAGTAGATCCTAATATTACACCTATTGAATGGGCTACACCCACAGTTAACATTCTGAAATCTACAGGGGACGTTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTACACCCAGTTCCAATTTTCGATCAACTACGCCAAAATCTCGCAAACGATACAAAGAAATGCATAACGTCTTCACAACCATTAATTGCATTTGACGAGAAACGTCCCCTTTATTTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAGAACTCGAACATAGAACAACCAATTGCTTTTTCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCTCTAGTAGTGCGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACGGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGAACTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTATTAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGAATACAATCCAGAAATGAAACCATTCTACAGAAACCGGGTTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACATCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAAAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGATTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAGTCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTTTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGAAGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGATTAATGCAGTATTTACAAGTAAAAGAAAATATTCGTACCACATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAATCAGCGGTAATTACATCCCGAAAACATAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACATGCTGATCACATCAGGCCACGCGAGTCCTCCACCTCAGAAACCCCGAGGAATGAAAGGGCGCATTCTTCTATGCTGTCGGCGACTGCTTCTCCAGACATTGGAATGGAAACAATAATTAGCGAAAGGCTAACTAAAAACAAGAATTCGGCAGCAGTACCATTACCTACACCGCAGTCGCCTACAAATGTACAAATTTCTCCAAATTCACCTTTACAGCTCCGCGTCGAAGTAATCGACGTATACAGGCACCCCGCCGTCTGA
Protein
MEFPKPVYSIKTSTPITLKQILDKHSQLFDGKLGKVNNYYVNIHVKPEAEPIHLPARPIKFSMKKNIEREIDRLISEGIVEKVDPNITPIEWATPTVNILKSTGDVRICGDYRTTLNPVLIKHLHPVPIFDQLRQNLANDTKKCITSSQPLIAFDEKRPLYLACDASEKGLGAVLFHKNSNIEQPIAFSSRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLIHIMGARRNLPKLANNRLVRWALVVRSYQYDIYYRKGENNTLADCLSRLPNPETEPSETEGLVHKIELRLLSTRMTDLNLLEQLLMKTTAKDHILTKVCQNLKTGWRESEYNPEMKPFYRNRVELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIKLFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTTSPSYRPSDQVYIKTRNDKIWESAVITSRKHKYSYIVSTPGGLEKRRHADHIRPRESSTSETPRNERAHSSMLSATASPDIGMETIISERLTKNKNSAAVPLPTPQSPTNVQISPNSPLQLRVEVIDVYRHPAV

Summary

EMBL
GBHO01042589    JAG01015.1    GBHO01042596    JAG01008.1    KL367712    KFD59941.1    + More
GDHC01014693    GDHC01004534    JAQ03936.1    JAQ14095.1    KL367659    KFD60588.1    GFTR01008725    JAW07701.1    KL363234    KFD51952.1    JWZT01000439    KII74358.1    JYDL01000067    KRX18868.1    JYDO01000377    KRZ65389.1    JWZT01002984    KII68048.1    GBHO01045651    GBHO01045644    GBHO01026684    GBHO01026679    JAF97952.1    JAF97959.1    JAG16920.1    JAG16925.1    EF199622    ABM90393.1    JWZT01005674    KII60352.1    AERX01052799    AERX01052800    EF199621    ABM90392.1    JYDL01000080    KRX17894.1    AZHX01001899    ETW98900.1    GEGO01004800    JAR90604.1    JYDK01000060    KRX78865.1    GEFM01006397    JAP69399.1    GEFM01002211    JAP73585.1    GFAA01002662    JAU00773.1    KL367976    KFD59423.1    JYDI01000010    KRY59721.1    GBIH01000761    JAC93949.1    JYDN01000036    KRX62859.1    MRZV01000143    PIK57404.1    HADW01008367    SBP09767.1    AAGJ04101977    NIVC01001652    PAA65446.1    JYDW01000348    KRZ48953.1    HADX01010638    SBP32870.1    JYDN01000181    KRX54093.1    JYDO01000093    KRZ71620.1    JYDH01000010    KRY40903.1    NIVC01000050    PAA92506.1    KRX54086.1    GEGO01004812    JAR90592.1    GEBQ01020673    GEBQ01011946    JAT19304.1    JAT28031.1    GFAC01001150    JAT98038.1    JYDP01000327    KRZ01162.1    GEGO01004546    JAR90858.1    KL367587    KFD62819.1    GEGO01004729    JAR90675.1    JYDL01000001    KRX27995.1    AERX01039690    JYDQ01000025    KRY20467.1    NIVC01000075    PAA91739.1    GBHO01027659    JAG15945.1    JYDI01000800    KRY43965.1    KL363640    KFD45214.1    GDHC01007869    JAQ10760.1    GACK01009588    JAA55446.1    NIRI01001153    RJW67559.1    KRX62850.1    GBHO01042583    JAG01021.1    NIVC01000551    PAA81070.1    HAAD01006009    CDG72241.1    GEGO01004533    JAR90871.1    KL363295    KFD48373.1    GEGO01004875    JAR90529.1    GEGO01004367    JAR91037.1    GFWV01022123    MAA46851.1    NIVC01002652    PAA56216.1    KL363215    KFD53596.1    GEZM01002003    JAV97411.1    JYDJ01000764    KRX33566.1   
Pfam
PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF00077   RVP
Interpro
IPR012337   RNaseH-like_sf        + More
IPR001995   Peptidase_A2_cat       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR001969   Aspartic_peptidase_AS       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR041373   RT_RNaseH       
IPR034128   K02A2.6-like       
IPR018061   Retropepsins       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
Gene 3D
PDB
3S3N     E-value=1.67274e-16,     Score=213

Ontologies

Topology

Length:
752
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00036
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00004
outside
1  -  752
 
 

Population Genetic Test Statistics

Pi
190.164346
Theta
141.890989
Tajima's D
1.224449
CLR
10.74127
CSRT
0.72166391680416
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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