Gene

KWMTBOMO12025  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004504

Annotation

PREDICTED:_mRNA_transport_regulator_3_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr20(+):5939341-5941764      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.205 Nuclear   Reliability : 2.271

CDS

ATGCCGCTAGATTTTCGAAGATTTAATGGTCCAGAAGATAGTGTATCATATAAAATATATACTAAAGACTACTTGAAAACATACGACGAACAATTAAAAGATCTGTATGATGAAAACGGGAAAAGAAAAGATGGACGTGAGCTAAATGAAGCTCGCAGCATGTTTGCCAGAACTGACATGGTTTCACAAGCAAAGGGTTCAGCATATGTGGAGTTAAGGAAAACTAAAGTTGTATGCTCTGTATTTGATCCTAGGGAGATACCACATCAAAATGAATTCCGTCAGCTTGGCCAGTTATATTGTGAAGTGAAATTTGCACCGTTTTCATGCCCGAGGAAACGTCGACCATATGTTCCTGATGTAGAAGAGAAAGCCTTGTCTGTTGCTTTACGGCAGGCTCTTGAACCGGCTGTCTGTAGGCACTTCTTCCCAAACTATCAGATTGATGTTTTAATATACATCTTAGAACATGACGGGTCATGTTTAGCAGCTGCTATCAATGCAGCAGGACTTGCTCTAGCTAATGCCGCCGTTCCAATGTTTGATATAATCACATCATGCTCTGTAGCAGTCATAGGCAACAAAATGTTCATTGACCCCACTGAAATAGAAGAACATATAGCAAAGAACAGCACAGAAGTAAACCACGGAATTATAACAATGTCAGTGTTATCACAGTTAAAACAGATTTCAGATTTCACACAAATCGGTTCTATGGATGTTGAGTGTGTCACAAAAGTAATGGAAGTTTTATTAAAAGAATGTGAAATAATAGTTCCGAATATACAAAGAGTTCTAGTTGTGGATGTTGTAAAGAATTTTGAATTGAAAAAACACTTAGAAGCAGAAACAAAGAAACGGGAAGAGATTTTGAAAAAGAAAATGGACGAATGGAGATCTTTATTAAATGGTCAATGA

Protein

MPLDFRRFNGPEDSVSYKIYTKDYLKTYDEQLKDLYDENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCLAAAINAAGLALANAAVPMFDIITSCSVAVIGNKMFIDPTEIEEHIAKNSTEVNHGIITMSVLSQLKQISDFTQIGSMDVECVTKVMEVLLKECEIIVPNIQRVLVVDVVKNFELKKHLEAETKKREEILKKKMDEWRSLLNGQ

Uniprot

H9J4R4   Q1HPJ2   A0A2W1BLX7   A0A2A4JIN7   A0A2H1V1X9   A0A3S2LW76   + More
A0A212FFB0   A0A194Q5M6   A0A194QQ98   S4PS80   A0A0L7KNJ3   A0A182Y9G3   A0A067RGW6   A0A182GUB1   A0A1S4FEA7   A0A1B6EBW8   A0A182WDZ1   Q1HQF7   Q175D0   A0A1B6J9U4   A0A182QLD9   A0A182TAE4   A0A182JRW9   A0A182UU87   A0A182MBR5   Q5TMQ4   A0A182HHJ9   A0A182RVI8   A0A182N2V1   A0A1Q3G245   A0A182XJT4   A0A084WIL8   A0A2P8XD50   D6WQR6   A0A182UGX2   A0A182PP20   A0A182L531   A0A1L8DXS7   A0A1B0CYM8   A0A336LLY7   A0A0N0U3H7   A0A1Y1MR01   A0A232FMG2   A0A088A779   A0A0C9RAN9   A0A182FB57   K7IM75   A0A2A3E7X6   E0W414   A0A2M4AUV2   A0A154PC05   F4W6U7   A0A2M4AVJ4   A0A0L7R7K9   A0A158NAL7   A0A026WSQ6   E9ISE4   E2AH65   A0A195DRM9   A0A151I6A6   W5JUB8   A0A1W4X8D8   A0A195EVH8   A0A151XKI5   A0A2S2R2H2   A0A0L8FMV1   A0A210Q424   A0A2J7PE35   B0XFY0   G3MM14   A0A3S1A1A1   A0A2S2NI00   A0A182JMX9   G3MM15   A0A023GHI3   A7RQ94   A0A2M4BWF6   J9K5C1   A0A2M4BWG7   A0A1S3DCI6   A0A2H8TT41   A0A0P5QD63   A0A0P5VT25   A0A0P5DXV4   A0A0P5T4Z1   A0A131XEF6   A0A0P5HAN2   A0A0P5WNE4   A0A0P5FZX3   A0A2G8K7M0   A0A131Y3H6   A0A1E1XHA9   A0A131YR87   V3ZGB1   A0A0P5SA38   L7M4B4  

Pubmed

19121390    28756777    22118469    26354079    23622113    26227816    + More
25244985    24845553    26483478    17204158    17510324    12364791    14747013    17210077    24438588    29403074    18362917    19820115    20966253    28004739    28648823    20075255    20566863    21719571    21347285    24508170    30249741    21282665    20798317    20920257    23761445    28812685    22216098    17615350    28049606    29023486    28503490    26830274    23254933    25576852   

EMBL

BABH01041251    DQ443410    ABF51499.1    KZ150034    PZC74665.1    NWSH01001423    + More
PCG71280.1    ODYU01000321    SOQ34858.1    RSAL01000153    RVE45679.1    AGBW02011364    AGBW02008841    OWR46782.1    OWR52410.1    KQ459460    KPJ00852.1    KQ461181    KPJ07678.1    GAIX01000170    JAA92390.1    JTDY01008476    KOB64549.1    KK852513    KDR22263.1    JXUM01088891    KQ563731    KXJ73413.1    GEDC01001934    JAS35364.1    DQ440487    ABF18520.1    CH477402    EAT41691.1    GECU01011833    JAS95873.1    AXCN02001090    AXCM01001160    AAAB01008986    EAL38841.3    APCN01002419    GFDL01001173    JAV33872.1    ATLV01023937    KE525347    KFB50062.1    PYGN01002827    PSN29919.1    KQ971354    EFA06035.2    GFDF01002870    JAV11214.1    AJVK01009248    UFQT01000042    SSX18735.1    KQ435916    KOX68794.1    GEZM01023968    JAV88099.1    NNAY01000049    OXU31547.1    GBYB01003896    JAG73663.1    KZ288353    PBC27316.1    DS235886    EEB20370.1    GGFK01011255    MBW44576.1    KQ434869    KZC09351.1    GL887762    EGI70060.1    GGFK01011464    MBW44785.1    KQ414642    KOC66756.1    ADTU01010378    KK107119    QOIP01000009    EZA58696.1    RLU18434.1    GL765350    EFZ16508.1    GL439483    EFN67182.1    KQ980612    KYN15154.1    KQ976413    KYM90366.1    ADMH02000120    ETN67736.1    KQ981954    KYN32265.1    KQ982037    KYQ60798.1    GGMS01014995    MBY84198.1    KQ428621    KOF66036.1    NEDP02005094    OWF43471.1    NEVH01026110    PNF14603.1    DS232970    EDS27099.1    JO842915    AEO34532.1    RQTK01000014    RUS91318.1    GGMR01003777    MBY16396.1    JO842916    AEO34533.1    GBBM01001986    JAC33432.1    DS469528    EDO46254.1    GGFJ01008274    MBW57415.1    ABLF02028366    GGFJ01008275    MBW57416.1    GFXV01005325    MBW17130.1    GDIQ01137141    JAL14585.1    GDIP01096013    LRGB01000568    JAM07702.1    KZS18063.1    GDIP01149347    JAJ74055.1    GDIP01137509    JAL66205.1    GEFH01003996    JAP64585.1    GDIQ01230212    GDIQ01030161    JAK21513.1    GDIP01083813    JAM19902.1    GDIQ01269548    JAJ82176.1    MRZV01000813    PIK43943.1    GEFM01002389    JAP73407.1    GFAC01000563    JAT98625.1    GEDV01007567    JAP80990.1    KB203771    ESO83192.1    GDIQ01107207    JAL44519.1    GACK01007046    JAA57988.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053268    UP000053240    + More
UP000037510    UP000076408    UP000027135    UP000069940    UP000249989    UP000075920    UP000008820    UP000075886    UP000075901    UP000075881    UP000075903    UP000075883    UP000007062    UP000075840    UP000075900    UP000075884    UP000076407    UP000030765    UP000245037    UP000007266    UP000075902    UP000075885    UP000075882    UP000092462    UP000053105    UP000215335    UP000005203    UP000069272    UP000002358    UP000242457    UP000009046    UP000076502    UP000007755    UP000053825    UP000005205    UP000053097    UP000279307    UP000000311    UP000078492    UP000078540    UP000000673    UP000192223    UP000078541    UP000075809    UP000053454    UP000242188    UP000235965    UP000002320    UP000271974    UP000075880    UP000001593    UP000007819    UP000079169    UP000076858    UP000230750    UP000030746   

PRIDE

H9J4R4    Q1HPJ2   

Pfam

PF01138   RNase_PH        + More
PF03725   RNase_PH_C
PF01746   tRNA_m1G_MT

Interpro

IPR027408   PNPase/RNase_PH_dom_sf        + More
IPR001247   ExoRNase_PH_dom1       
IPR036345   ExoRNase_PH_dom2_sf       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR015847   ExoRNase_PH_dom2       
IPR028564   MT_TRM10-typ       
IPR025812   TRM10C       
IPR038459   MT_TRM10-typ_sf       
IPR016009   tRNA_MeTrfase_TRMD/TRM10       
IPR007356   tRNA_m1G_MeTrfase_euk       

SUPFAM

SSF54211   SSF54211        + More
SSF55666   SSF55666       

Gene 3D

3.30.230.70     3.40.1280.30    

ProteinModelPortal

H9J4R4   Q1HPJ2   A0A2W1BLX7   A0A2A4JIN7   A0A2H1V1X9   A0A3S2LW76   + More
A0A212FFB0   A0A194Q5M6   A0A194QQ98   S4PS80   A0A0L7KNJ3   A0A182Y9G3   A0A067RGW6   A0A182GUB1   A0A1S4FEA7   A0A1B6EBW8   A0A182WDZ1   Q1HQF7   Q175D0   A0A1B6J9U4   A0A182QLD9   A0A182TAE4   A0A182JRW9   A0A182UU87   A0A182MBR5   Q5TMQ4   A0A182HHJ9   A0A182RVI8   A0A182N2V1   A0A1Q3G245   A0A182XJT4   A0A084WIL8   A0A2P8XD50   D6WQR6   A0A182UGX2   A0A182PP20   A0A182L531   A0A1L8DXS7   A0A1B0CYM8   A0A336LLY7   A0A0N0U3H7   A0A1Y1MR01   A0A232FMG2   A0A088A779   A0A0C9RAN9   A0A182FB57   K7IM75   A0A2A3E7X6   E0W414   A0A2M4AUV2   A0A154PC05   F4W6U7   A0A2M4AVJ4   A0A0L7R7K9   A0A158NAL7   A0A026WSQ6   E9ISE4   E2AH65   A0A195DRM9   A0A151I6A6   W5JUB8   A0A1W4X8D8   A0A195EVH8   A0A151XKI5   A0A2S2R2H2   A0A0L8FMV1   A0A210Q424   A0A2J7PE35   B0XFY0   G3MM14   A0A3S1A1A1   A0A2S2NI00   A0A182JMX9   G3MM15   A0A023GHI3   A7RQ94   A0A2M4BWF6   J9K5C1   A0A2M4BWG7   A0A1S3DCI6   A0A2H8TT41   A0A0P5QD63   A0A0P5VT25   A0A0P5DXV4   A0A0P5T4Z1   A0A131XEF6   A0A0P5HAN2   A0A0P5WNE4   A0A0P5FZX3   A0A2G8K7M0   A0A131Y3H6   A0A1E1XHA9   A0A131YR87   V3ZGB1   A0A0P5SA38   L7M4B4  

PDB

6H25     E-value=4.83525e-22,     Score=257

KEGG

100101185    K12587 exosome complex component MTR3 | (RefSeq) mRNA transport regulator 3

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0004527   GO:0034427   GO:0071051   GO:0016075   GO:0071028   GO:0005730   GO:0000176   GO:0034475   GO:0000177   GO:0008033   GO:0005739  

PANTHER

PTHR13563:SF5   PTHR13563  

Length:

305

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.49185

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01748

outside

1  -  305

 

 

Pi

245.618421

Theta

201.919618

Tajima's D

0.681233

CLR

0.053821

CSRT

0.566521673916304

Interpretation

Uncertain