Gene

KWMTBOMO12024

Annotation

PREDICTED:_GDT1-like_protein_5_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr20(-):5889692-5936900      View in EpiBrowser

Full name

GDT1 family protein      

Location in the cell

PlasmaMembrane   Reliability : 3.164

CDS

ATGGCGATGAAACATCCAAGAATCATAGTTTTCGCTGGAGCTATTTCGGCCCTTGTGTTCATGACGATACTATCGGCTGCTTTCGGCTGGATTGCCACCGTTATCCCAAGAGTGTACACGTACTACGTCAGCGCGGCCTTGTTCGCGATATTCGGCATCAAAATGTTGAGGGACGGCTGGAAAATGGACCCAAACGAAGGTCAGGAGGAGTTGGAGGAGGTGCAGAGTGAATTAAAAAGAAGAGAGGATCAGGAAGAGAAAGAGGAGACCCTTGACATGCTGGAGCAAGGTCAAGCGGAGAACAAGCGGAGGAAACGTAATGCGATACTGAAAGTGCTGCTACAAGCCGCCACATTGACTTTCTTGGCTGAATGGGGAGACAGGTCGCAGCTAGCCACGGTTGTGCTGGCGACAAGAGAAGACGCTGTTGGCGTTGTAGTCGGGGGGTCGCTCGGACACGCGCTGTGCACGGGCTTGGCTGTGATAGGAGGAAGAATGGTGGCGCAGAAGATATCTGTGAGGACTGTTACAATAATTGGTGGTATTGTGTTCCTGTTCTTTGCAGTGAGTGCTCTTTTCGTTGGTCCCGGCGAATAA

Protein

MAMKHPRIIVFAGAISALVFMTILSAAFGWIATVIPRVYTYYVSAALFAIFGIKMLRDGWKMDPNEGQEELEEVQSELKRREDQEEKEETLDMLEQGQAENKRRKRNAILKVLLQAATLTFLAEWGDRSQLATVVLATREDAVGVVVGGSLGHALCTGLAVIGGRMVAQKISVRTVTIIGGIVFLFFAVSALFVGPGE

Similarity

Belongs to the GDT1 family.

Feature

chain  GDT1 family protein

Uniprot

A0A3S2LFN0   A0A2A4JVZ3   A0A1E1WB11   A0A2P8Y7Q0   E9II66   A0A1Q3F8P3   + More
A0A1Q3F8H8   A0A1Q3F8I2   A0A1Q3F8E6   K7J4U2   E0V9C2   B0WBE2   A0A146LV97   A0A0A9X1S2   F4WJ84   A0A232FBM7   A0A151J6J6   A0A151WW30   E2C891   A0A195FK81   A0A195BV72   A0A158NED0   Q170F1   A0A2A3E4D3   A0A1L8D8W6   A0A0P6J6A9   A0A2J7PCF2   A0A1L8D983   E2B1I9   A0A195CAY9   A0A023ENC7   A0A067R5R5   A0A0N0BEJ2   A0A088A8Y8   E9GY14   A0A1L8D9F4   A0A1B6DTS7   A0A2H8TQ25   A0A0K8TPX2   A0A0L7RK86   A0A1Y1NBD2   A0A2M4AFN7   A0A023F3F7   A0A2M4ADQ5   T1HVT5   D2A1N6   A0A0V0GEY7   V5H0Q1   A0A224XIV9   A0A2M3Z7G3   A0A0P4VR92   A0A026W081   A0A2P2IEY4   A0A069DRD1   A0A2M4CRX6   A0A267EAV8   A0A267G383   A0A226E565   A0A226ENR2   A0A1W4W0Y4   A0A1L8HTR8   Q5FWW7   A0A0A1WQ31   A0A034UZ86   Q7PV67   W4Z7L1   A0A1U8CYQ6   A0A1I8P032   A0A0R1E849   Q28J80   A0A2B4RZT9   C4XVE8   Q7KSI9   A0A2I4D2U8   W8AZ35   A0A1I8M908   A0A1L8HL78   A0A2R7WS03   A0A0Q9WVC2   S7PUD0   T1PMK5   G1MJD4   B1H2K1   V8NM66   A0A218VG00   A0A2Y9RF98   A0A3Q7SF94   W5NTV0   K7FX81   L8ICX6   A0A1B6HCR5   U3IHR5   A0A3M6UQI7   A0A0Q9WY58   A0A091WIG4   G3VVR0   K9KGJ0   A0A2D4NNF7   A0A226PUP8   A0A091NK92  

Pubmed

29403074    21282665    20075255    20566863    26823975    25401762    + More
21719571    28648823    20798317    21347285    17510324    26999592    24945155    26483478    24845553    21292972    26369729    28004739    25474469    18362917    19820115    27129103    24508170    30249741    26334808    27762356    25830018    25348373    12364791    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    25315136    20010809    24297900    20809919    17381049    22751099    30382153    21709235    24621616   

EMBL

RSAL01000153    RVE45680.1    NWSH01000560    PCG75653.1    GDQN01006890    JAT84164.1    + More
PYGN01000836    PSN40184.1    GL763358    EFZ19737.1    GFDL01011187    JAV23858.1    GFDL01011208    JAV23837.1    GFDL01011183    JAV23862.1    GFDL01011204    JAV23841.1    AAZX01012718    DS234991    EEB09978.1    DS231879    EDS42381.1    GDHC01018005    GDHC01007500    JAQ00624.1    JAQ11129.1    GBHO01041524    GBHO01029645    GBRD01016136    JAG02080.1    JAG13959.1    JAG49690.1    GL888182    EGI65662.1    NNAY01000460    OXU28236.1    KQ979851    KYN18847.1    KQ982696    KYQ51977.1    GL453586    EFN75832.1    KQ981490    KYN41075.1    KQ976401    KYM92524.1    ADTU01013252    CH477475    EAT40321.1    KZ288379    PBC26565.1    GFDF01011183    JAV02901.1    GDUN01000171    JAN95748.1    NEVH01027059    PNF14005.1    GFDF01011184    JAV02900.1    GL444934    EFN60446.1    KQ978023    KYM97870.1    JXUM01081860    GAPW01002691    KQ563273    JAC10907.1    KXJ74143.1    KK852868    KDR14688.1    KQ435827    KOX71954.1    GL732574    EFX75640.1    GFDF01011069    JAV03015.1    GEDC01008230    JAS29068.1    GFXV01004285    MBW16090.1    GDAI01001658    JAI15945.1    KQ414573    KOC71290.1    GEZM01010134    JAV94180.1    GGFK01006275    MBW39596.1    GBBI01002859    JAC15853.1    GGFK01005592    MBW38913.1    ACPB03001666    KQ971338    EFA02700.1    GECL01000269    JAP05855.1    GALX01000624    JAB67842.1    GFTR01004000    JAW12426.1    GGFM01003718    MBW24469.1    GDKW01001530    JAI55065.1    KK107522    QOIP01000001    EZA49315.1    RLU27122.1    IACF01006927    LAB72510.1    GBGD01002444    JAC86445.1    GGFL01003885    MBW68063.1    NIVC01002341    PAA58715.1    NIVC01001696    NIVC01000614    PAA64985.1    PAA79844.1    LNIX01000006    OXA52832.1    LNIX01000002    OXA59272.1    CM004466    OCT99509.1    BC089176    AAH89176.1    GBXI01013133    GBXI01010623    JAD01159.1    JAD03669.1    GAKP01022651    GAKP01022649    JAC36301.1    AAAB01008986    EAA00391.5    AAGJ04116506    CM000160    KRK03780.1    CR760016    CAJ82833.1    LSMT01000244    PFX22293.1    BT083459    ACR20070.1    AY058385    AE014297    AAL13614.1    AAN13630.1    GAMC01020379    JAB86176.1    CM004467    OCT96854.1    KK855391    PTY22336.1    CH964272    KRF99979.1    KE163975    EPQ14518.1    KA649163    AFP63792.1    ACTA01048404    BC161030    AAI61030.1    AZIM01003074    ETE62773.1    MUZQ01000001    OWK64591.1    AMGL01098635    AGCU01021681    AGCU01021682    JH881490    ELR54048.1    GECU01035233    JAS72473.1    RCHS01001028    RMX55628.1    CH933806    KRG00918.1    KK735703    KFR15447.1    AEFK01217261    JL640576    AEQ00837.1    IACN01007089    LAB46569.1    AWGT02000009    OXB83843.1    KL384063    KFP89299.1   

Proteomes

UP000283053    UP000218220    UP000245037    UP000002358    UP000009046    UP000002320    + More
UP000007755    UP000215335    UP000078492    UP000075809    UP000008237    UP000078541    UP000078540    UP000005205    UP000008820    UP000242457    UP000235965    UP000000311    UP000078542    UP000069940    UP000249989    UP000027135    UP000053105    UP000005203    UP000000305    UP000053825    UP000015103    UP000007266    UP000053097    UP000279307    UP000215902    UP000198287    UP000192221    UP000186698    UP000007062    UP000007110    UP000189705    UP000095300    UP000002282    UP000225706    UP000000803    UP000192220    UP000095301    UP000007798    UP000008912    UP000197619    UP000248480    UP000286640    UP000002356    UP000007267    UP000275408    UP000009192    UP000053605    UP000007648    UP000198419   

PRIDE

C4XVE8    Q7KSI9   

Pfam

PF01169   UPF0016

Interpro

IPR001727   Gdt1        + More
IPR036259   MFS_trans_sf       

SUPFAM

SSF103473   SSF103473       

ProteinModelPortal

A0A3S2LFN0   A0A2A4JVZ3   A0A1E1WB11   A0A2P8Y7Q0   E9II66   A0A1Q3F8P3   + More
A0A1Q3F8H8   A0A1Q3F8I2   A0A1Q3F8E6   K7J4U2   E0V9C2   B0WBE2   A0A146LV97   A0A0A9X1S2   F4WJ84   A0A232FBM7   A0A151J6J6   A0A151WW30   E2C891   A0A195FK81   A0A195BV72   A0A158NED0   Q170F1   A0A2A3E4D3   A0A1L8D8W6   A0A0P6J6A9   A0A2J7PCF2   A0A1L8D983   E2B1I9   A0A195CAY9   A0A023ENC7   A0A067R5R5   A0A0N0BEJ2   A0A088A8Y8   E9GY14   A0A1L8D9F4   A0A1B6DTS7   A0A2H8TQ25   A0A0K8TPX2   A0A0L7RK86   A0A1Y1NBD2   A0A2M4AFN7   A0A023F3F7   A0A2M4ADQ5   T1HVT5   D2A1N6   A0A0V0GEY7   V5H0Q1   A0A224XIV9   A0A2M3Z7G3   A0A0P4VR92   A0A026W081   A0A2P2IEY4   A0A069DRD1   A0A2M4CRX6   A0A267EAV8   A0A267G383   A0A226E565   A0A226ENR2   A0A1W4W0Y4   A0A1L8HTR8   Q5FWW7   A0A0A1WQ31   A0A034UZ86   Q7PV67   W4Z7L1   A0A1U8CYQ6   A0A1I8P032   A0A0R1E849   Q28J80   A0A2B4RZT9   C4XVE8   Q7KSI9   A0A2I4D2U8   W8AZ35   A0A1I8M908   A0A1L8HL78   A0A2R7WS03   A0A0Q9WVC2   S7PUD0   T1PMK5   G1MJD4   B1H2K1   V8NM66   A0A218VG00   A0A2Y9RF98   A0A3Q7SF94   W5NTV0   K7FX81   L8ICX6   A0A1B6HCR5   U3IHR5   A0A3M6UQI7   A0A0Q9WY58   A0A091WIG4   G3VVR0   K9KGJ0   A0A2D4NNF7   A0A226PUP8   A0A091NK92  

KEGG

101741754    no KO assigned | (RefSeq) transmembrane protein 165-like

GO

GO:0016021   GO:0032472   GO:0005765   GO:0006487   GO:0006874   GO:0032588   GO:0035751   GO:0010008   GO:0008270   GO:0015074   GO:0006412   GO:0005856   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR12608  

Subcellular location

Membrane  

Length:

198

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

103.84586

Exp number, first 60 AAs:

42.15639

Total prob of N-in:

0.98373

POSSIBLE N-term signal

sequence

inside

1  -  6

TMhelix

7  -  29

outside

30  -  33

TMhelix

34  -  53

inside

54  -  107

TMhelix

108  -  127

outside

128  -  141

TMhelix

142  -  164

inside

165  -  170

TMhelix

171  -  193

outside

194  -  198

 

 

Pi

168.052755

Theta

19.349983

Tajima's D

-1.318206

CLR

1.519214

CSRT

0.0852957352132393

Interpretation

Uncertain