Gene

KWMTBOMO12022

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr20(-):5811969-5815020      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 3.296

CDS

ATGTCGACGTCGGGCTACCTAGTTAATGTGCCGAAACTCAAAGGTCGCGAAAATTACGATGATTGGGCGTTCGCAACAAGTAATTTTTTGCTGCTCGAAGGCATTGACTTGGAGAACCTTTCCGCAGAAATGAGTGAAGCTGAGATGAAAAAAGCCAAAGCCAAACTCGTCATGACTATTGACTCTTCATTATACGCGCATATCAAGAGTGAGACTACAGTAATCGGTGTATGGAATAAATTGAAACAATTGTTCGATGACACCGGGTATCAACGAAAAATCAGTTTGCTTCGAACGTTAATTTCAGTTCGCCTCGAAAACTGTGATTCGATGACAAGCTACGTATCTCAAATAGTTGAAACTGCGCAGAAATTGAAGGGCACAGGATTCGAAATCACAGATGAGTGGATTGGGTCATTACTTTTGGCGGGACTCTCAGATAAGTTTTCACCTATGATAATGGCGATCGAACATTCAGGAATCGCCATTAGCGCTGACGTCATTAAGACAAAATTGCTCGATATGTGTGAGGAGGTGGGTACTACTGAAAAAGATTCTGCATTTTGGTCAAAACAACAGCGGTGGAAAAGTGGAAACACTAACCGTGGTGTGAAATCGCAAACGTCAACGTCAAATAGTGACAGAAATGACAGTGCAAGTTCAAATGGCGGTAAACAAATAAAATGTTATAATTGCAAGAAAATAGGGCATTTTAAAAATAAATGTCCCGAACTAAAAACAAAGAAAACCTTAAATGCTTTTAGTGCTGCATTTTTTAACGGAAATTTTAGTACAAAAGACTGGTACGTCGATTCAGGTGCAAGTGCACACATGACGGCAAGTCGAGATTGTTTACAGTTAAATAGACCCGTGCATGAAAACAAAGAAATAGTAGTTGCAAATCAAATGACTGTGCCTGTTGTGAGTGTTGGTGAAACACAGATAACCACGATTGTAAATGGTTCTCAGTATGATGTCATTGTAAAGAATGTTTTATACATACCGAAGCTCACGACAAACTTATTATCGGTAAGTCAACTGATAGCAAATGGCAACAAAGTGTCATTTAAGAAGGATGTTTGTTTAATATATAATCCAGTAAATGAGCTTATAGGAATTGCAAACTTAACTAATGGTGTGTACAAACTACAAATACAAAGACCAGAGAGTGCATTATTGGCCATGACAATGTGGCATAGAAGACTAGGACATGTAAACAGTAAATCTTTAGAAATGATGAAAGAAGGTGCTGTGAAAGGGGTTACTTTTGATAAGAAAGCTGATATTCAGATCAAGAACTGTGAAGTGTGCTGTGAGGGCAAACAGGCTCGTTTCCCTTTCCCATCTGCTAATCATAGAAGTGATATACTACTAGACGTAATACACTCAGATTTATGTGGGCCGATGGAGACCAAATCAATTGGTCAAGCAAAGTACTTTCTTCTGTTCATAGATGATGCCAGCAGAATGACTTATGTCTATTTCTTGAAGGAAAAGAACCAAGTATTCCAGCATTTCAAAGAATTTCGTGTTTTGGTGGAGAATCAAACAGGAAACAAGATCAAAATATTGAGAACAGATAACGGAGGTGAGTTTTGTTCACAAGAGATGGAAGAGTTCTTAAAACAAACTGGAATCATCCATCAGAAGACTAATCCTCACACTCCACAACAGAATGGACTCTCAGAAAGGTTCAACAGAACTGTAGTTGAACGGGCTAGATGTTTACTGTTTGAATCAGATCTCGACAAAAGTTTTTGGGGTGAAGCAGTGAATACTGCAGTATACCTAATGAATAGAATACCAGCTGTCAGTCTAGGCATGATGACACCATATGAGAAGTGGACAGGCAAGAAGCCAGATTTGAGCTATGTCAGGATTTTTGGAAGTAAAGTAATGGTGCATGTTCCCAAAGTGCAAAGACAAAAATGGGATAAGAAGGCTGACAAATTAATTCTAGTTGGTTATCCGGATAACGTGAAAGGTTACAGATTATATAACCCCAAAACCAAGAAGATTACTACGAGCAGGGACGTCATTATAATAGAGAAAGAACACTCGGACACAGCTCAGGTAGTAGTAAATAATGAAAAAGTGTTGGAGAAAGTTGAAAATTCAGAGAAAGAGAGAAGCATATCAGAAAATTCAACTATAGACGCTAACGATCCTACATATATTTATGACTCATCGAGCTCCCACGAAGATTCATATCAATCGGTGTATGAAAGTGAAAATGAGTCAACCTTAGAATCCATTTTAGAAGAAAATATTCAAAACTTACAGGAGCTTGGTAAGCGCAAGAGAAAGCCAGTAGAAAGATATGGCTATTCCAATCTCTGCATTGTAGATGAGCTGGAATCCTGTGGTGAAGAACTGAGTTATGAAACAGCAATAAATGGACCAGAGAAGGAACTGTGGGAACAGGCGATGGCAGAAGAACTGAAGGCATTTGAAGAAAACCAAGCATGGGAATTTGTTGACAGAAAAGAAGCTGATAGGATAGTGCAATGTAAATGGGTTTTTAAGAAAAAGTTTGAATGTGATGGTAAAGTGCGTTATAGGGCTAGACTGGTAGCAAAAGGTTTTACTCAAAAAGAAGGTTAA

Protein

MSTSGYLVNVPKLKGRENYDDWAFATSNFLLLEGIDLENLSAEMSEAEMKKAKAKLVMTIDSSLYAHIKSETTVIGVWNKLKQLFDDTGYQRKISLLRTLISVRLENCDSMTSYVSQIVETAQKLKGTGFEITDEWIGSLLLAGLSDKFSPMIMAIEHSGIAISADVIKTKLLDMCEEVGTTEKDSAFWSKQQRWKSGNTNRGVKSQTSTSNSDRNDSASSNGGKQIKCYNCKKIGHFKNKCPELKTKKTLNAFSAAFFNGNFSTKDWYVDSGASAHMTASRDCLQLNRPVHENKEIVVANQMTVPVVSVGETQITTIVNGSQYDVIVKNVLYIPKLTTNLLSVSQLIANGNKVSFKKDVCLIYNPVNELIGIANLTNGVYKLQIQRPESALLAMTMWHRRLGHVNSKSLEMMKEGAVKGVTFDKKADIQIKNCEVCCEGKQARFPFPSANHRSDILLDVIHSDLCGPMETKSIGQAKYFLLFIDDASRMTYVYFLKEKNQVFQHFKEFRVLVENQTGNKIKILRTDNGGEFCSQEMEEFLKQTGIIHQKTNPHTPQQNGLSERFNRTVVERARCLLFESDLDKSFWGEAVNTAVYLMNRIPAVSLGMMTPYEKWTGKKPDLSYVRIFGSKVMVHVPKVQRQKWDKKADKLILVGYPDNVKGYRLYNPKTKKITTSRDVIIIEKEHSDTAQVVVNNEKVLEKVENSEKERSISENSTIDANDPTYIYDSSSSHEDSYQSVYESENESTLESILEENIQNLQELGKRKRKPVERYGYSNLCIVDELESCGEELSYETAINGPEKELWEQAMAEELKAFEENQAWEFVDRKEADRIVQCKWVFKKKFECDGKVRYRARLVAKGFTQKEG

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

A0A212F7V4   A0A1Y1N668   A0A1Y1N932   A0A1Y1N6L8   A0A194RJV9   A0A0J7NHJ8   + More
A0A2A4J959   A0A1Y1NAZ7   A0A2A4JRI1   A0A194RU38   A0A182GZK6   A0A1Y1N664   A0A1W7R657   A0A1W7R6H6   A0A1Y1LWI3   A0A0A9Z683   A0A0A1WXQ3   A0A085MVP5   A0A224XA26   A0A0A9XVJ9   W4VRQ4   A0A1W7R663   A0A1W7R670   A0A0A9WPH5   A0A085N572   A0A034VP70   A0A0A9XEY5   A0A0A9WRE3   A0A0V0T3I0   A0A0V1FKH2   A0A0V1K1Y9   A0A0V1APS7   A0A0V0TUP0   A0A0V1F2E6   W4VRP9   W4VRP2   A0A1W7R6K6   A0A1W7R6J6   A0A2J7Q1Z2   A0A2J7RKJ6   A0A2J7R668   A0A2J7R8S8   A0A1B6E9D0   A0A0V0Z6Q0   A0A355BEE2   A0A0J7KG03   A0A0A9XBM0   A0A0A9WQD4   A0A0N1ICY1   A0A1Y1LYU4   A0A0A9YFM0   A0A146LFV8   W8ANX7   A0A224X581   A0A0K8U6S2   T1PKV2   A0A151THM1   A0A0V0WR33   W8AEF0   A0A0V0V098   A0A0K8U956   A0A0V0YNF4   A0A0A1XLZ7   W8AL23   A0A0V1NJN8   A0A0V0RWJ3   A0A0A9YB53   A0A0A9W6P7   A0A0J7KDP1   A0A1Y3E9R1   A0A0V0WQU6   A0A0V0T740   A0A1X7U495   A0A0J7K7P3   W8BFA2   A0A151RCJ0   A0A0V1GS48   A0A0V1APU2   W8AUM1   W8B528   A0A251T2S6   A0A1W7R6C8   A0A0J7K7M6   A0A0V1APE7   A0A0N1IFR1   A0A151RCT9   P10978   A0A2N9EE40   W8APZ4   Q9AU17  

Pubmed

22118469    28004739    26354079    26483478    25401762    25830018    + More
24929829    25348373    30148503    26823975    24495485    22057054    28538728    2536143    16040666   

EMBL

AGBW02009826    OWR49812.1    GEZM01011856    JAV93393.1    GEZM01011857    JAV93390.1    + More
GEZM01011858    GEZM01011854    JAV93389.1    KQ460297    KPJ16236.1    LBMM01004924    KMQ91985.1    NWSH01002292    PCG68657.1    PCG68658.1    GEZM01011855    JAV93396.1    NWSH01000816    PCG74073.1    KQ459875    KPJ19636.1    JXUM01099713    KQ564513    KXJ72145.1    GEZM01011859    JAV93384.1    GEHC01000991    JAV46654.1    GEHC01000990    JAV46655.1    GEZM01045162    JAV77889.1    GBHO01003630    JAG39974.1    GBXI01011094    JAD03198.1    KL367628    KFD61291.1    GFTR01008662    JAW07764.1    GBHO01020706    JAG22898.1    GANO01000510    JAB59361.1    GEHC01000988    JAV46657.1    GEHC01000989    JAV46656.1    GBHO01033237    JAG10367.1    KL367553    KFD64618.1    GAKP01015352    JAC43600.1    GBHO01026221    JAG17383.1    GBHO01033235    JAG10369.1    JYDJ01000808    KRX33413.1    JYDT01000069    KRY86576.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDH01000330    KRY26802.1    JYDJ01000136    KRX42725.1    JYDR01000001    KRY80095.1    GANO01000659    JAB59212.1    GANO01000660    JAB59211.1    GEHC01000867    JAV46778.1    GEHC01000868    JAV46777.1    NEVH01019375    PNF22597.1    NEVH01002725    PNF41351.1    NEVH01006980    PNF36330.1    NEVH01006721    PNF37230.1    GEDC01002834    JAS34464.1    JYDQ01000379    KRY07987.1    DNYX01000353    HBK84078.1    LBMM01008124    KMQ89126.1    GBHO01026200    JAG17404.1    GBHO01036544    JAG07060.1    KQ460882    KPJ11482.1    GEZM01045163    JAV77888.1    GBHO01011746    GBHO01011744    GBHO01011742    JAG31858.1    JAG31860.1    JAG31862.1    GDHC01012180    JAQ06449.1    GAMC01020352    JAB86203.1    GFTR01008771    JAW07655.1    GDHF01030254    JAI22060.1    KA648745    AFP63374.1    CM003608    KYP66486.1    JYDK01000071    KRX78146.1    GAMC01019995    JAB86560.1    JYDN01000113    KRX56900.1    GDHF01029191    JAI23123.1    JYDU01000001    KRY01876.1    GBXI01002679    JAD11613.1    GAMC01019998    JAB86557.1    JYDM01000185    KRZ84108.1    JYDL01000068    KRX18751.1    GBHO01016859    JAG26745.1    GBHO01043059    JAG00545.1    LBMM01008884    KMQ88558.1    LVZM01023578    OUC39908.1    KRX78123.1    JYDJ01000518    KRX34768.1    LBMM01012464    KMQ86211.1    GAMC01018156    JAB88399.1    KQ483843    KYP40338.1    JYDP01000350    KRZ01021.1    KRY26801.1    GAMC01018157    JAB88398.1    GAMC01018154    JAB88401.1    CM007901    OTG04806.1    GEHC01000927    JAV46718.1    LBMM01012368    KMQ86259.1    JYDH01000361    KRY26687.1    KQ460208    KPJ16606.1    KYP40337.1    X13777    OIVN01000260    SPC77257.1    GAMC01019997    JAB86558.1    AF279585    AAK29467.1   

Proteomes

UP000007151    UP000053240    UP000036403    UP000218220    UP000069940    UP000249989    + More
UP000055048    UP000054995    UP000054805    UP000054826    UP000054776    UP000054632    UP000235965    UP000054783    UP000075243    UP000054673    UP000054681    UP000054815    UP000054924    UP000054630    UP000243006    UP000007879    UP000055024    UP000215914    UP000084051   

Pfam

PF13976   gag_pre-integrs        + More
PF00098   zf-CCHC
PF00665   rve
PF07727   RVT_2
PF13961   DUF4219
PF14244   Retrotran_gag_3
PF13696   zf-CCHC_2

Interpro

IPR025724   GAG-pre-integrase_dom        + More
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR025314   DUF4219       
IPR029472   Copia-like_N       
IPR025829   Zn_knuckle_CX2CX3GHX4C       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A212F7V4   A0A1Y1N668   A0A1Y1N932   A0A1Y1N6L8   A0A194RJV9   A0A0J7NHJ8   + More
A0A2A4J959   A0A1Y1NAZ7   A0A2A4JRI1   A0A194RU38   A0A182GZK6   A0A1Y1N664   A0A1W7R657   A0A1W7R6H6   A0A1Y1LWI3   A0A0A9Z683   A0A0A1WXQ3   A0A085MVP5   A0A224XA26   A0A0A9XVJ9   W4VRQ4   A0A1W7R663   A0A1W7R670   A0A0A9WPH5   A0A085N572   A0A034VP70   A0A0A9XEY5   A0A0A9WRE3   A0A0V0T3I0   A0A0V1FKH2   A0A0V1K1Y9   A0A0V1APS7   A0A0V0TUP0   A0A0V1F2E6   W4VRP9   W4VRP2   A0A1W7R6K6   A0A1W7R6J6   A0A2J7Q1Z2   A0A2J7RKJ6   A0A2J7R668   A0A2J7R8S8   A0A1B6E9D0   A0A0V0Z6Q0   A0A355BEE2   A0A0J7KG03   A0A0A9XBM0   A0A0A9WQD4   A0A0N1ICY1   A0A1Y1LYU4   A0A0A9YFM0   A0A146LFV8   W8ANX7   A0A224X581   A0A0K8U6S2   T1PKV2   A0A151THM1   A0A0V0WR33   W8AEF0   A0A0V0V098   A0A0K8U956   A0A0V0YNF4   A0A0A1XLZ7   W8AL23   A0A0V1NJN8   A0A0V0RWJ3   A0A0A9YB53   A0A0A9W6P7   A0A0J7KDP1   A0A1Y3E9R1   A0A0V0WQU6   A0A0V0T740   A0A1X7U495   A0A0J7K7P3   W8BFA2   A0A151RCJ0   A0A0V1GS48   A0A0V1APU2   W8AUM1   W8B528   A0A251T2S6   A0A1W7R6C8   A0A0J7K7M6   A0A0V1APE7   A0A0N1IFR1   A0A151RCT9   P10978   A0A2N9EE40   W8APZ4   Q9AU17  

PDB

1C1A     E-value=0.000217172,     Score=109

KEGG

NA   

GO

GO:0015074   GO:0000943   GO:0003676   GO:0008270   GO:0003964   GO:0004491   GO:0004190   GO:0004519   GO:0006412   GO:0005856   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR11439  

Length:

867

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00590999999999999

Exp number, first 60 AAs:

0.00106

Total prob of N-in:

0.00024

outside

1  -  867

 

 

Pi

361.589426

Theta

112.68889

Tajima's D

-1.299132

CLR

0.035528

CSRT

0.087995600219989

Interpretation

Uncertain