Gene

KWMTBOMO12021

Pre Gene Modal

BGIBMGA004355

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_ras-responsive_element-binding_protein_1_[Bombyx_mori]

Location

Bomo_Chr20(-):5661346-5698780      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.686

CDS

ATGAGGAATCGTACGACTAGTATTGACAGCGACAACCGTTCGGATAGGAGCGACGATGAGGACGTCAGAAGGGCGCGAAAGCGGGCCGCGTCCACTTCTCCTTCCCCCATCCCGATGGACAAGAGGGTCGCTCGCTTCGACTGCCCGAAGTGCCGCCAGCGTTTCGATTCGGTCAACGCTTTCGACATTCACCGGTTCACAGCGCACGGAGATGATTCGAGAACGGGCCACAACGAGGTCAGTCTCGTCGACTACTCGACAAAGAAGATTCCAGAAATTATACGTGCCAGGAACCACGTCTCATCGACCGAACAACGATACAAATGTGACGTGTGCTCGAGGGATCTCCCCAATATTCAAGTATTTGAGATTCACAGGAAAACATGCACACCGAATCGTGGCTTGAGTCCGATACGCGACAGACGAGAAGAATTCTTGGCTAATCTAGATCTGCGGACCAAATCGTTCGGGATTCCGGGCACGTTGACGCCGCCGATGGAGAGATTTACATCGAAGTTCGAAGACGGGCATCTCGCGACTAACGGTATTAGACATATCGATGCAGCTCGAGATTTGGCAGATATTCAATCGATATTGAACGTCACGTCTGCGGGGAGTCTTCTCGAGAGACTCACTGGTAACAGAGTAGCTTTAGAGAGCACTGTACTTACGCCTCCAGACACCGTCGTTAAAGAACGAGAGACTGAAGAGACACAGGATAACTTTGCCGCTGAATTCAGGAGGATGAAGCTTCGGGGAGAGTTCCCTTGTCGCTTGTGTCCAGCTAAATTTCCCAATCTTAGAGCTTTAAAGGGCCATAACAGAGTCCACTTAAGTGGAACAGGACCGGGCCCTTATCAGTGCAACATGTGTCCACACGCATCTTTAGATAAGGCGGCTCTAGTGAGACATATGAGGACACATAACGGTGATCGTCCATATGAGTGTGCGGTGTGTAATTACGCGTTCACTACGAAAGCAAACTGCGAGAGACATTTAAGAAACAGACACGCCAAAGTAACCCGTGAAGATGTAAAACGCTCCATCATTTACCATCCGTCCGAAGATCCGAATAACGACGAAGTCAACTCGAAGCTCGCACGCGATGAAGTCAAGAGATCTCTCGCGTTCCACACCCCAGATATGGATAGGCGAAATGAGAGCACCGGTCGCGTGACTCCGCTAACTCATTTTACGCCTAGTTTCATTGCCGAAAGACATCCGGTCACAACACTTACATCGAAAGCTTTACCGGAAGCGCCGCTTTTGCGCGAATCAGACCGTCCCACGCCAAGGATCAAAGTGAAAGGAATCGGTCAGTTAAATCAAATCCCTGAATTCAGATCACCAGAACAAAATTACAAAACCAATGACGCTCATTCCGAAACCAAAAAGAAACGCGATGCCGACGATGAACGCAAAACCCCTGTACGCCCTACATTCGAACCAGATCCTGCGTCCGTTGCTGCTTCGGCATTAGAAAAAACGAGACTACTCTTAGCCCAGCAAAGATTATTTGAAACGTCGCTCCCAAAAATTGACCCAGCTTACTATGCTACTCATCTATCTCAAATATACGCTGGTGCGGTGCCAGGAATTCCTGGGCTACCTCTGCCCCCGTCTTTTCCTTACTTTCTTCAACCCTCGTTTTTCCCCCACCCCTCTGACACACAAGAACTTGCAGAGATAAAGCAACGTATTCAAAAAGAAATCATCCGTGGGCTGAGTATGTCCGGTGGAAGGCTTATTCCAAATGAACAAGAAACTGTTCCTAAAGAAGAACCCGAGGAAGAAGAAGTGAAGCCAATTCCACAAATGTCATCGCCTGCGCTGTCGCCTCACCCAGAATCTCCCCGACCCCTGAGCAATAACCTCGTCCCTCAGACAGACTCCGTAAAGATGGTCATTAAAAATGGGGTGCTTATGCCAAAACAGAAACAAAGACGCTATCGTACAGAAAGACCATTTTCTTGCTCACAGTGCTCTGCTAGATTCACGTTGAGATCTAACATGGAAAGGCATGTAAAACAACAGCATCCCCAACACTGGAGTGTCCGTAGACCCGCTCAAAGAGGCCCCCCACCTTACACCTCTACGGACGCTTTGGCCGATCGCGTTAAATTCGCCCTTTTGGCTCATCACCTTGAACGACCACTGCAGTCAGAGAGATCGCCGGCGCGACGAGACTCTGATGAAGTCGCCGATAATGAAGAAGATGAGGACGACGCCCTAATAATTGACGAGGAAACGGATGTGGAAACCAAGTCCGAAGAACATACTGCAGCCCGACAAGCAGCTGCCGAAATACTGATGGCTTCGCGACAACAAGAGATCAATAAAGACTTTGATCTTAAAATAGCAGGCAATTTAATTAATAAACCAGTTCCCATAGCAGAGAAAACAGAATCTGGACCCGACCCTACACCAGGACAAGATTTGCTGACCGTTCCAGTTGTACCCACACGCAGTGACGAGGAAGAAGACGAAGAAGGCCTGGTAGCTTCAACAAGCGAGGGAAATAACTCGGGCAGCGACGAAAATAAATCTGAATCTGATGTCGCACAACCACCGAAAAAGAAATCGGCGTACAGTCTCGCACCGAATAGGGTCTCGTGCCCTTACTGCCATAGAAAGTTCCCGTGGTCTTCGTCCCTCCGCCGTCACGTCCTCACTCACACGGGCCAGAAGCCGTTCAAGTGTCCCCACTGCCCTCTACTTTTCACTACCAAATCGAATTGTGACCGTCATCTGCTAAGAAAACATGGGGGGTCAGCGCGTGCCATACTCGCCGAGCCCATACCGGACACCGTGATGGCTCCCCAGCCCGCGAATGAGAACAGGAGTGTTCCAGAGAGGCCTTTCAAATGTGCATCATGCCCAACCAGCACGTTCTCCTCTATAGAAACTTTAAAGAAGCACATGTCCTCTCGGCACGGGACCGACTCGCGGCCGAGCTCGCCAAACCTGGAGATTATTGACGACAACTCTGAGATGGGCCTCGCTTTCAAGTGTCATTTGTGCGAGGCGTCCTTCGGCGACAGAAGCGGGGCCCTCGCGCATTTGGCAGCCACACATGCGACTGAATACGAACAGCTGGTGAATAAGGGGGCGTTGGATGCGGCCAGCGACAGGAGTGAAAGCGCTGACGATGACGACAGGGGCAAGTTTCCCGATCACGCTAATCGAAAGCAAATCGTTATCTAA

Protein

MRNRTTSIDSDNRSDRSDDEDVRRARKRAASTSPSPIPMDKRVARFDCPKCRQRFDSVNAFDIHRFTAHGDDSRTGHNEVSLVDYSTKKIPEIIRARNHVSSTEQRYKCDVCSRDLPNIQVFEIHRKTCTPNRGLSPIRDRREEFLANLDLRTKSFGIPGTLTPPMERFTSKFEDGHLATNGIRHIDAARDLADIQSILNVTSAGSLLERLTGNRVALESTVLTPPDTVVKERETEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDMDRRNESTGRVTPLTHFTPSFIAERHPVTTLTSKALPEAPLLRESDRPTPRIKVKGIGQLNQIPEFRSPEQNYKTNDAHSETKKKRDADDERKTPVRPTFEPDPASVAASALEKTRLLLAQQRLFETSLPKIDPAYYATHLSQIYAGAVPGIPGLPLPPSFPYFLQPSFFPHPSDTQELAEIKQRIQKEIIRGLSMSGGRLIPNEQETVPKEEPEEEEVKPIPQMSSPALSPHPESPRPLSNNLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAQRGPPPYTSTDALADRVKFALLAHHLERPLQSERSPARRDSDEVADNEEDEDDALIIDEETDVETKSEEHTAARQAAAEILMASRQQEINKDFDLKIAGNLINKPVPIAEKTESGPDPTPGQDLLTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDVAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTVMAPQPANENRSVPERPFKCASCPTSTFSSIETLKKHMSSRHGTDSRPSSPNLEIIDDNSEMGLAFKCHLCEASFGDRSGALAHLAATHATEYEQLVNKGALDAASDRSESADDDDRGKFPDHANRKQIVI

Uniprot

H9J4B6   A0A2A4JLL9   A0A194Q5N0   A0A1E1WCW1   A0A212FJ51   A0A2H1VHE8   + More
A0A194QQA1   A0A1E1W8C6   A0A0L7LNF7   A0A1Y1MYX8   D6WSG6   A0A336M7Z1   A0A088AJ12   A0A0T6BA88   A0A1B0DC86   A0A1L8DDA7   A0A1L8DDC7   A0A1L8DDQ5   A0A1B0C9B0   A0A195D3Q2   A0A195EQT0   A0A195BQX9   A0A1W4XA89   A0A1W4XA04   E2AN23  

Pubmed

19121390    26354079    22118469    26227816    28004739    18362917    + More
19820115    20798317   

EMBL

BABH01022158    BABH01022159    NWSH01001038    PCG72975.1    KQ459460    KPJ00857.1    + More
GDQN01006241    JAT84813.1    AGBW02008312    OWR53764.1    ODYU01002580    SOQ40270.1    KQ461181    KPJ07682.1    GDQN01007943    JAT83111.1    JTDY01000540    KOB76731.1    GEZM01017182    JAV90849.1    KQ971352    EFA06638.2    UFQS01000668    UFQT01000668    SSX05968.1    SSX26325.1    LJIG01002743    KRT84197.1    AJVK01030638    AJVK01030639    AJVK01030640    GFDF01009631    JAV04453.1    GFDF01009632    JAV04452.1    GFDF01009630    JAV04454.1    AJWK01002093    AJWK01002094    KQ976885    KYN07528.1    KQ982021    KYN30568.1    KQ976419    KYM89288.1    GL441034    EFN65181.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000007266    UP000005203    UP000092462    UP000092461    UP000078542    UP000078541    UP000078540    UP000192223    UP000000311   

PRIDE

H9J4B6   

Pfam

PF00096   zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR003604   Matrin/U1-like-C_Znf_C2H2       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9J4B6   A0A2A4JLL9   A0A194Q5N0   A0A1E1WCW1   A0A212FJ51   A0A2H1VHE8   + More
A0A194QQA1   A0A1E1W8C6   A0A0L7LNF7   A0A1Y1MYX8   D6WSG6   A0A336M7Z1   A0A088AJ12   A0A0T6BA88   A0A1B0DC86   A0A1L8DDA7   A0A1L8DDC7   A0A1L8DDQ5   A0A1B0C9B0   A0A195D3Q2   A0A195EQT0   A0A195BQX9   A0A1W4XA89   A0A1W4XA04   E2AN23  

PDB

5YEG     E-value=2.67612e-12,     Score=178

KEGG

101746370    K20210 ras-responsive element-binding protein 1 | (RefSeq) ras-responsive element-binding protein 1

PATHWAY

04013    MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0003676   GO:0008270   GO:0001228   GO:0000978   GO:0005634   GO:0000122   GO:0003700   GO:0000977   GO:0046872   GO:0005840   GO:0006412   GO:0005856   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

Length:

1067

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00384

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00020

outside

1  -  1067

 

 

Pi

200.475653

Theta

178.171615

Tajima's D

0.402068

CLR

0.191157

CSRT

0.481025948702565

Interpretation

Uncertain