Gene

KWMTBOMO12017

Pre Gene Modal

BGIBMGA004502

Annotation

PREDICTED:_peroxisomal_membrane_protein_PEX13_[Bombyx_mori]

Location

Bomo_Chr20(+):5611091-5614902      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.098 Nuclear   Reliability : 1.71

CDS

ATGCTCAGCGGTCTCACGAGCACTATCAATGAGAACCTGAACGATCCGAACACGTGGCAGGATCCACTCCGCGCTATAGCCCAATACGATTTCCAAGCGACGCGCGTCGGAGAGCTCAGCTTCCGCGCCAATCAGCTGCTCTCCATCGCGCCGCAACACCTCCAAACGCACCTGTGGAACACCGGCTGGCTTATGGCGACGACCGATCGGAAGGAAATCGGACTCGTGCCATTAAATTACATTAAGATTATGAAGACGCCAACGGACAGTGAATCGAAAACGGACGTTGACCCAAACGAGTTCGATAAGTTCTTTAAGAAGGACTAA

Protein

MLSGLTSTINENLNDPNTWQDPLRAIAQYDFQATRVGELSFRANQLLSIAPQHLQTHLWNTGWLMATTDRKEIGLVPLNYIKIMKTPTDSESKTDVDPNEFDKFFKKD

Uniprot

H9J4R2   A0A194QVU6   A0A194QBP6   A0A1E1WR91   A0A212EYP5   A0A2W1BS10   + More
A0A2A4K4V8   A0A2H1WMV7   A0A182NNR9   A0A182MKL2   A0A182R1Q0   A0A182PVP3   A0A0L0BVZ5   W8CCH6   A0A182PTI1   A0A182JSM9   A0A182J781   A0A0A1X213   A0A182ULP9   A0A182UL34   A0A1A9V3A0   A0A1I8Q644   B4LMQ1   B4KNC7   A0A182KMY8   A0A182XH86   A0A182HR08   D3TLG4   B4J6P8   Q7Q0Y2   A0A034VDR8   A0A1B0AGF2   A0A1B0AGF3   A0A2P8Y3J6   T1PC50   A0A1I8MEH3   A0A182W8H5   A0A1J1I175   A0A1A9WR43   A0A0K8UAS8   Q95SJ3   B4MR62   A0A0M5J9S0   A0A2M4CU38   A0A1W4UA21   A0A2M4BTF1   Q7JRD4   A0A2M4BTD7   U5ERQ2   A0A2M4AU13   A0A2M4AUY0   A0A336MUK7   B4P4K6   B4HQ31   B4QE04   B3NRN9   B3MDQ8   Q290L3   B4GBN9   Q17CV7   A0A0L7KS94   A0A3B0J305   A0A182GMG9   A0A023ERA6   E9GYM3   W2TA86   I3J4E5   F7DG26   A0A3B4FG80   A0A0B2V0C3   G3WLZ5   A0A2J7RGN3   A0A3P8Q0N8   A0A3P9CQC7   A0A3Q2V8H7   A0A1L8G6W9  

Pubmed

19121390    26354079    22118469    28756777    26108605    24495485    + More
25830018    17994087    18057021    20966253    20353571    12364791    25348373    29403074    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    22936249    15632085    23185243    17510324    26227816    26483478    24945155    21292972    25186727    17495919    21709235    27762356   

EMBL

BABH01022156    KQ461181    KPJ07686.1    KQ459460    KPJ00861.1    GDQN01001556    + More
JAT89498.1    AGBW02011482    OWR46577.1    KZ150043    PZC74533.1    NWSH01000127    PCG79281.1    ODYU01009398    SOQ53794.1    AXCM01000301    JRES01001254    KNC24196.1    GAMC01003681    JAC02875.1    GBXI01011229    GBXI01009381    JAD03063.1    JAD04911.1    CH940648    EDW60992.1    KRF79722.1    CH933808    EDW09980.1    KRG05017.1    APCN01001630    EZ422266    ADD18542.1    CH916367    EDW00951.1    AAAB01008980    EAA14590.4    GAKP01019017    JAC39935.1    PYGN01000972    PSN38809.1    KA646341    AFP60970.1    CVRI01000038    CRK93955.1    GDHF01028859    JAI23455.1    AY060764    AAL28312.1    CH963849    EDW74601.1    CP012524    ALC40856.1    GGFL01004621    MBW68799.1    GGFJ01007214    MBW56355.1    AE013599    BT001726    AAF58402.1    AAN71481.1    GGFJ01007215    MBW56356.1    GANO01003633    JAB56238.1    GGFK01010933    MBW44254.1    GGFK01011285    MBW44606.1    UFQS01002915    UFQT01002915    SSX14887.1    SSX34274.1    CM000158    EDW90645.1    CH480816    EDW47694.1    CM000362    CM002911    EDX06898.1    KMY93449.1    CH954179    EDV56191.1    CH902619    EDV36443.1    CM000071    EAL25349.1    KRT02094.1    CH479181    EDW32297.1    CH477304    EAT44164.1    JTDY01006520    KOB65941.1    OUUW01000001    SPP75667.1    JXUM01075594    KQ562895    KXJ74891.1    GAPW01001905    JAC11693.1    GL732575    EFX75421.1    KI660143    ETN77912.1    AERX01028102    JPKZ01002769    KHN75198.1    AEFK01030968    AEFK01030969    NEVH01003767    PNF39970.1    CM004474    OCT79719.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000075884    + More
UP000075883    UP000075900    UP000075885    UP000037069    UP000075881    UP000075880    UP000075903    UP000075902    UP000078200    UP000095300    UP000008792    UP000009192    UP000075882    UP000076407    UP000075840    UP000001070    UP000007062    UP000092445    UP000245037    UP000095301    UP000075920    UP000183832    UP000091820    UP000007798    UP000092553    UP000192221    UP000000803    UP000002282    UP000001292    UP000000304    UP000008711    UP000007801    UP000001819    UP000008744    UP000008820    UP000037510    UP000268350    UP000069940    UP000249989    UP000000305    UP000005207    UP000002280    UP000261460    UP000031036    UP000007648    UP000235965    UP000265100    UP000265160    UP000264840    UP000186698   

PRIDE

H9J4R2    Q95SJ3   

Pfam

PF04088   Peroxin-13_N        + More
PF14604   SH3_9
PF07717   OB_NTP_bind
PF00018   SH3_1
PF07653   SH3_2

Interpro

IPR001452   SH3_domain        + More
IPR035463   Pex13       
IPR036028   SH3-like_dom_sf       
IPR007223   Peroxin-13_N       
IPR011709   DUF1605       
IPR027417   P-loop_NTPase       

SUPFAM

SSF50044   SSF50044        + More
SSF52540   SSF52540       

ProteinModelPortal

H9J4R2   A0A194QVU6   A0A194QBP6   A0A1E1WR91   A0A212EYP5   A0A2W1BS10   + More
A0A2A4K4V8   A0A2H1WMV7   A0A182NNR9   A0A182MKL2   A0A182R1Q0   A0A182PVP3   A0A0L0BVZ5   W8CCH6   A0A182PTI1   A0A182JSM9   A0A182J781   A0A0A1X213   A0A182ULP9   A0A182UL34   A0A1A9V3A0   A0A1I8Q644   B4LMQ1   B4KNC7   A0A182KMY8   A0A182XH86   A0A182HR08   D3TLG4   B4J6P8   Q7Q0Y2   A0A034VDR8   A0A1B0AGF2   A0A1B0AGF3   A0A2P8Y3J6   T1PC50   A0A1I8MEH3   A0A182W8H5   A0A1J1I175   A0A1A9WR43   A0A0K8UAS8   Q95SJ3   B4MR62   A0A0M5J9S0   A0A2M4CU38   A0A1W4UA21   A0A2M4BTF1   Q7JRD4   A0A2M4BTD7   U5ERQ2   A0A2M4AU13   A0A2M4AUY0   A0A336MUK7   B4P4K6   B4HQ31   B4QE04   B3NRN9   B3MDQ8   Q290L3   B4GBN9   Q17CV7   A0A0L7KS94   A0A3B0J305   A0A182GMG9   A0A023ERA6   E9GYM3   W2TA86   I3J4E5   F7DG26   A0A3B4FG80   A0A0B2V0C3   G3WLZ5   A0A2J7RGN3   A0A3P8Q0N8   A0A3P9CQC7   A0A3Q2V8H7   A0A1L8G6W9  

PDB

1WXU     E-value=1.14778e-07,     Score=127

KEGG

101746231    K13344 peroxin-13 | (RefSeq) peroxisomal membrane protein PEX13

PATHWAY

04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0005777   GO:0016560   GO:0016021   GO:0048137   GO:0005778   GO:1990429   GO:0007031   GO:0001764   GO:0021795   GO:0001561   GO:0060152   GO:0005779   GO:0001967   GO:0007626   GO:0005515   GO:0006508   GO:0005856   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR19332  

Length:

108

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000890000000000001

Exp number, first 60 AAs:

0.00053

Total prob of N-in:

0.14717

outside

1  -  108

 

 

Pi

202.761547

Theta

192.289905

Tajima's D

1.517429

CLR

0.140689

CSRT

0.791160441977901

Interpretation

Uncertain