SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12016
Pre Gene Modal
BGIBMGA004502
Annotation
PREDICTED:_peroxisomal_membrane_protein_PEX13_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.837
 

Sequence

CDS
ATGAGCGAACCAAGCCATATTCAAAATAAAATGGACTTCGGCTTGGTTAACGCAGGCGCACTAGGTAACATCGGGGAGGCTTCCAATGTTTCCAATTTCCGGAATCCTATAGCATCGACTTCGACCGAAGCGTACGGGCACAGTTTACCCCCTCTGCCTCCGCGACCCGAGATGGGGTATCCAACTGTTTCTCAAGGAATGACGCAGCCGTACGGGGGTATGCAGTATGGGATGGGAAATTATGGTGGTTTCGGATATGGAGGATACGGCGGCGGTTATGGAATGGGAGGAATGGGTGCCATGGGCCTGAATGGTATGGCCCCTTATGGTGCGTACAACCGTTACGGATCTCCACTGGGCTATGGAGACATTGAGAGCAGATTTATTCAATTGGCAGAGGAGAATTCAAGGCCAGCTTTTGACTCAATACAGAGCTTAGTCAGTGCTGTAGGCAGTATAGCTATGATGCTGGAGAACACCTTCTTTGCTTTGACTAGCTCATTTCGTGCTATATTAGGTGTCGCTGAAAACTTTGGTAGGTTGAGAACAGTATTTGCCCAGTTCTGGTCAACATTTGCAGTAATACGAACACTGAATTGGATTTTCAAGAAACTCCTTGTAATGCTTGGCATTAGATCTGAAACTGAATTTAAGGTAAGGTAA
Protein
MSEPSHIQNKMDFGLVNAGALGNIGEASNVSNFRNPIASTSTEAYGHSLPPLPPRPEMGYPTVSQGMTQPYGGMQYGMGNYGGFGYGGYGGGYGMGGMGAMGLNGMAPYGAYNRYGSPLGYGDIESRFIQLAEENSRPAFDSIQSLVSAVGSIAMMLENTFFALTSSFRAILGVAENFGRLRTVFAQFWSTFAVIRTLNWIFKKLLVMLGIRSETEFKVR

Summary

Pfam
PF04088   Peroxin-13_N        + More
PF14604   SH3_9
Interpro
IPR001452   SH3_domain        + More
IPR035463   Pex13       
IPR036028   SH3-like_dom_sf       
IPR007223   Peroxin-13_N       
SUPFAM
SSF50044   SSF50044       

Ontologies

Topology

Length:
220
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
50.57752
Exp number, first 60 AAs:
0.40065
Total prob of N-in:
0.72783
outside
1  -  220
 
 

Population Genetic Test Statistics

Pi
247.939128
Theta
221.846892
Tajima's D
0.369517
CLR
0.236164
CSRT
0.477926103694815
Interpretation
Uncertain
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