Silkworm Genome Informatics Database

Gene

KWMTBOMO12007

Pre Gene Modal

BGIBMGA004361

Annotation

PREDICTED:_zinc_finger_and_BTB_domain-containing_protein_24-like_[Bombyx_mori]

Location

Bomo_Chr20(-):5376828-5378620 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.504

CDS

ATGGCCAGCCCACCACCGAACCCCCGAGAAGGCGAGCAGGGCCCCGAGCACGCCGAGGAGGCGCGCGCCAAAGGCGCGCCCGCCCCGCAGAAGAGGTTCGTAGCGCCGCCCGCCGAAGAGCTGCCTTCTAAGCTGCATTACGTGACCGTGAGCGCTCCTGGTCCGAGCGGAGTCAAAGCTACATTTCGCACGGTGAAGGTACCGCGTCGAGTTCCAACCCTGGGTGGAGTTCGGTCCCGCACAGAGGCCGCGGCAGCGCCGGCCACGCCCGCCCCTGCCGAGCCGCCTCCCGCATCTGAACGTACCAGGAAAGGCCGTCGGGACCATGCTAAGCGGCACGTCTGCAGTACCTGTGACAAGCGCTTCTCCAGCCCAGGAAAACTAAATCAACATGTATTGTCTCACACAGGTGAGCTGCCTTTCTCTTGTGATTTGTGTGAAAAGCGATTCAATACTAGGTTCAAACTTGCTCGTCATGGGCTCATTCACAGTGAAGCTAAAGCATTTGCATGCAATGTTTGTGGTAAAACATTCAATCGGAAGGATCATCTCACCAATCATGTCAGAGTCCATAATCCTATTAAGAAATTTTATACATGTGAGAGACCTGATTGTAGGAAGTCATACACATCTAACTTGAGTTACCGCAAACATGTTGCATTGCACTCAGCGGAAGAAGGGAATTTGCAATGTAAAATATGTAATGCCACTTTCAGCACAAGGCAGGAAATTGTTTATCATCTGAAGGTGCACACTGGCAGTCGAACTTTAAAAAGTGAGACTGATAAAAAGTTTACTTGCAGCTACTGTGAGCGAAGGTTCTTTACAGCTAAGGATGTTAGACGGCACTTAGTGGTGCATACAGGTAGACGTGATTTCTTATGTCCGTTCTGCCCACAAAAGTTTGGGAGAAAAGATCACTTGGTTCGCCATGTTAAAAATGCACATCCTGATGAATCTTGGAAATCTGCTGCTGTTGGTACATCCAGTGAACCACCACCAGAGGCATCTGCTTTTGAGGAAACATATAGTGAGTTTGCTTTAGAAGGAACAGACTTTGGAATCTGGAAGCCACCATCACCAAAGGTGACCACCCCAGAGGGTAGAACACGTGTGCCCTCTACTGACATAATTGTGGAAATACCTCCATTAGACCCATCTGAAATAAAAGTGGAGCCACTGGATATTAAGGATTCTTTGAACATTAAACAAGAAGAAACGCAATCACAAAATTGTGACCTCCTTGAGAATGTTGAGTACCCACCAATAATTTGGAATCCTTCATATTTGAGCCCACAAGATTTAATAGTTTCAGAAAATGTTGAATCTTATGGACTGCTCGATCCAGGTGAAGGCCCTTCAGGCCTGTCGAGCCAGATTTTGGGACTCTTGGATGATAGGGAGCCTTCTTATTCAGGTGAAGATGGTCGTGTTCAGCAACAACGCTTGCCAGCTTTCACACAGGCTTTTCAGACAGCACAGAGCCCGAAACCGCCAAAACCACCACCCCCACCGCACTAG

Protein

MASPPPNPREGEQGPEHAEEARAKGAPAPQKRFVAPPAEELPSKLHYVTVSAPGPSGVKATFRTVKVPRRVPTLGGVRSRTEAAAAPATPAPAEPPPASERTRKGRRDHAKRHVCSTCDKRFSSPGKLNQHVLSHTGELPFSCDLCEKRFNTRFKLARHGLIHSEAKAFACNVCGKTFNRKDHLTNHVRVHNPIKKFYTCERPDCRKSYTSNLSYRKHVALHSAEEGNLQCKICNATFSTRQEIVYHLKVHTGSRTLKSETDKKFTCSYCERRFFTAKDVRRHLVVHTGRRDFLCPFCPQKFGRKDHLVRHVKNAHPDESWKSAAVGTSSEPPPEASAFEETYSEFALEGTDFGIWKPPSPKVTTPEGRTRVPSTDIIVEIPPLDPSEIKVEPLDIKDSLNIKQEETQSQNCDLLENVEYPPIIWNPSYLSPQDLIVSENVESYGLLDPGEGPSGLSSQILGLLDDREPSYSGEDGRVQQQRLPAFTQAFQTAQSPKPPKPPPPPH

Uniprot

H9J4C2 A0A2H1WBQ9 A0A2A4JIE4 A0A194QRT1 A0A194QL34 A0A0L7LVR8 + More
A0A212FAB1 D6WQR3 A0A1W4XDE1 A0A1Y1ML00 A0A3Q0IPJ6

Pubmed

19121390 26354079 26227816 22118469 18362917 19820115 + More
28004739

EMBL

BABH01022139 ODYU01007533 SOQ50386.1 NWSH01001376 PCG71478.1 KQ461181 + More
KPJ07690.1 KQ459053 KPJ04146.1 JTDY01000033 KOB79281.1 AGBW02009503 OWR50674.1 KQ971354 EFA06038.1 GEZM01028222 JAV86369.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000037510 UP000007151 + More
UP000007266 UP000192223 UP000079169

PRIDE

H9J4C2

Pfam

PF00096 zf-C2H2

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR027765   PLAG1/PLAGL2
IPR027770   PLAGL1

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J4C2 A0A2H1WBQ9 A0A2A4JIE4 A0A194QRT1 A0A194QL34 A0A0L7LVR8 + More
A0A212FAB1 D6WQR3 A0A1W4XDE1 A0A1Y1ML00 A0A3Q0IPJ6

PDB

5WJQ E-value=2.16034e-24, Score=279

KEGG

101741475 K19484 zinc finger protein PLAG1 | (RefSeq) zinc finger and BTB domain-containing protein 24-like

GO

GO:0003676 GO:0005634 GO:0046872 GO:0008270 GO:0006511 GO:0016422 GO:0004890 GO:0005216 GO:0043564 GO:0006418 GO:0003824

PANTHER

PTHR24408:SF20 PTHR24399:SF31

Length:

506

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00058

outside

1 - 506

Pi

122.639658

Theta

193.546417

Tajima's D

-1.665662

CLR

336.511777

CSRT

0.0408479576021199

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics