Silkworm Genome Informatics Database

Gene

KWMTBOMO11999

Pre Gene Modal

BGIBMGA004368

Annotation

PREDICTED:_transcription_factor_Sox-17-alpha-A_[Bombyx_mori]

Location

Bomo_Chr20(-):4936171-5091902 View in EpiBrowser

Transcription factor

HMG

Location in the cell

Nuclear Reliability : 4.205

CDS

ATGATGGACTCGGGAGGCACAGGGGTAGCGGAATCGCCGCCGACATACCACCGAACCTACGAGCAATACGTCCAAGGAGCCGTCGAGAACAGCGCAGACTCGGTCCAAGACCAGACCAGTCCTGAACTGGTGTGGTCTACATTACCTTACGGCATCGATTACAGGACGCCATACGATTATCGAAATCCTTATGACACGATCAGAGATTACTCGACGCAACAGTACGCGAGGGCTCCCTTCACAACTAAAATGGGACAGGCGAAAGCGCTAAAGGAAGCCAGGATAAGGAGACCCATGAACGCATTCATGGTTTGGGCGAAAGTGGAGCGTAAAAAGCTGGCTGACGAAAATCCTGATCTGCATAATGCCGACCTCAGTAAGATGTTAGGTAAAAAGTGGCGTTCGCTGACTCCTCAAGACCGACGGCCGTTCGTCGAGGAAGCGGAGCGTCTGCGAGTCATACATATGACCGAGCATCCTAACTACAAGTACAGACCTAGACGGCGAAAGCAAAACAAGGCCAGACCCAACCAACCTGCCACGCCAGTCAGCGCCCCTTCCTCTGCCTCTGCCGCTTTAGGATCGCCAACATCGCCTCTTGCCTCGGACTACCAAACAAACCAGCAGTTCAACGGTCACGTTCAAACGCCGGAATCGTCTCCGGCAAGGTCTCCGGAGCCGCAAGGCAGAAGAAGTACTCCAGCCGAAGCTCCCTTACCGACCCCAGATGCGTCTCCTGTCGAGAACGAGAAAGAAAACTTCCAGTACGAGGAGAGGCGAAGGACTTTGAACCCTTCGTCGATATCCGACACGTATTCTCCATACAAATCATACAGGCCCGGCTCCTACTCGCCAGCCCCCGTGGCCGCAATGGGCATGGCCAACGGCATGTACGTCATGTGCACACAGAGGACGCTGACGGAGCAGCCGCCTCTAGTGACCGGAACATTCTTCCCGCCAGTAGCCACATCTCAAGATCAACAAGCTTTGGGCACGTCAACCCCACGCGTGTCTTCGGCGCCCAGCGGCCCCATGAACTCTGAATACAGCATCCAATACCATCCCTACGAACAATACGAACAGATGTACAAAACTGAAGACCCCTACGTGCACTACCCGGAGCAGCCTAAAACCGAATACGACACCGGCGGTAGCTATTTCTCGGAAGAACCTCCGCCGAATCCTCAACAGGAGGTCGAATTCATGAATCCTCGTTCAGAAATAAGGACGGGTTCTCCCGACTCCGACGTCGACACCAGGGAGTTCGATAAATACTTCAACCACGGCGCAGAGAGTGCCATGGATCAACACCAGCAGTACAGATACGAGCAACAATGCTATCGGCCGGTTTACTGTCCGGAACAAGCGCCGGAACCGGAATACTGTACCGAGAGGATGTACCCCCCGTACGCGTCGGTTATAACCGGTACTCCGCCCGCGACGTATGCTCCCGCCACACCCGGGGCCGAGGTCAGACCCGAAGATGAATTCAGCGAGATATTAGCCGGCGTCCGACAGACCTGCTACAGCAATTGA

Protein

MMDSGGTGVAESPPTYHRTYEQYVQGAVENSADSVQDQTSPELVWSTLPYGIDYRTPYDYRNPYDTIRDYSTQQYARAPFTTKMGQAKALKEARIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPFVEEAERLRVIHMTEHPNYKYRPRRRKQNKARPNQPATPVSAPSSASAALGSPTSPLASDYQTNQQFNGHVQTPESSPARSPEPQGRRSTPAEAPLPTPDASPVENEKENFQYEERRRTLNPSSISDTYSPYKSYRPGSYSPAPVAAMGMANGMYVMCTQRTLTEQPPLVTGTFFPPVATSQDQQALGTSTPRVSSAPSGPMNSEYSIQYHPYEQYEQMYKTEDPYVHYPEQPKTEYDTGGSYFSEEPPPNPQQEVEFMNPRSEIRTGSPDSDVDTREFDKYFNHGAESAMDQHQQYRYEQQCYRPVYCPEQAPEPEYCTERMYPPYASVITGTPPATYAPATPGAEVRPEDEFSEILAGVRQTCYSN

Uniprot

H9J4C9 A0A2W1BLJ6 A0A2A4KAB3 A0A2H1VWX6 A0A194QVW0 A0A194QFG9 + More
A0A212FPI3

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01022108 BABH01022109 KZ150178 PZC72553.1 NWSH01000004 PCG81019.1 + More
ODYU01004945 SOQ45335.1 KQ461181 KPJ07701.1 KQ459053 KPJ04159.1 AGBW02002142 OWR55658.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151

PRIDE

H9J4C9

Pfam

PF00505 HMG_box

Interpro

IPR036910 HMG_box_dom_sf + More
IPR009071 HMG_box_dom

SUPFAM

SSF47095 SSF47095

Gene 3D

1.10.30.10

ProteinModelPortal

H9J4C9 A0A2W1BLJ6 A0A2A4KAB3 A0A2H1VWX6 A0A194QVW0 A0A194QFG9 + More
A0A212FPI3

PDB

3F27 E-value=2.97566e-28, Score=313

KEGG

101745799 K04495 transcription factor SOX17 (SOX group F) | (RefSeq) transcription factor Sox-17-alpha-A

PATHWAY

04310 Wnt signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0005634 GO:0003677

Length:

511

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00979999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00128

outside

1 - 511

Pi

269.06272

Theta

179.602463

Tajima's D

1.740638

CLR

0.183887

CSRT

0.84060796960152

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics