Gene

KWMTBOMO11998

Pre Gene Modal

BGIBMGA004369

Annotation

PREDICTED:_BSD_domain-containing_protein_1-B-like_[Bombyx_mori]

Location

Bomo_Chr20(-):4872766-4879868      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.998

CDS

ATGGCGGAAAAATCAACTGATTCAAGTGCGAGTGAGGCAAGCAGCTCGCAAATCAGCGATGAAAAGCAGTCCGGTAACTGGTGGGACTCTTGGTTGTCATCTGCTAAAACTAAATCTGCAGAAGTGTATACAATGGTGAAGAAAGACCTCGACGAAATAGGCAGTGCTGTTAAATGTGAAGCAAGTCATGTTTTCAGCACCACATCCAATGTTATAGGCAAGACTCTGAAGTTGGATGTACCAGAGTCACCTGCTAATGCTATGAAAAAGAGTATCAGCACATTCATCGGTCAAGTGAGTACGGTCCTGAATCCGGAGCCAGATGATGAAGACGACACAGAAGTTATACTGTCCTCCGGTGACACTACCATGCTGTCAACGTACAAGAAAGAACTAGAAGCTCTACAGCGCGTGGACGCTACCTTCATAGTGCCGGCCTACAGTCCAGAGTTTGAGGCTTGGAAGGCCAGCCTTGAGACATCCGAGGCCGGTATAGTGTCGCCGGTGTCGGCCGCCAGACGCCTCAACTCGAATCCCGTGCTGAAAGCGCAGTACGACAAGCTTGTGCCGGATGCGGTCTCACACGATGAATTTTGGGAACGGTACTTATTCCGTGTAGCCCTACTTCAAGATAAGCTGGCCGCAGCCTCTCGCAAGCAAACCATCGAGGAACCCACCAATGACCCCGTAATGGCGAATTTACCATTAGAATCACAGCCACAAACTCCCGAAAAAGTTCCAGAAAAAGTTCCAATCATAGAGAACGAAAAGAATTACGAGAACGAAGACATAGACAACGTCGTCACCTGGGAGGACGAAGACTTCGCTCATGACGTAGAACTGACGGAGGAACAGCAAACTCTGCTTCTAGAGGAATACGAGAGGGAGATCGCTTCGAAAAAACTCGCAAAACAGAACACGACATGCGACTCAGTCAACAACAACAATAACAAAGCGGATAATCCAACGAAAAAGTCCACGAACAAGACCACAGATAACATGAACAACAGGAACATAGACAAAAACAAACATGGCCGCACACCGGAAAAGGCGGGAAAACTAGACCCGTGCGGCAACAATCTGGTCGAAGACTATTTCGCTGATAAGGAAGTCAAAGATGACGCCAGTGCCAATTCGGACGAGAGCTGGGAGAAAGATTTCGAAATTGACGATGTCAAACAGAAAGCATGA

Protein

MAEKSTDSSASEASSSQISDEKQSGNWWDSWLSSAKTKSAEVYTMVKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMKKSISTFIGQVSTVLNPEPDDEDDTEVILSSGDTTMLSTYKKELEALQRVDATFIVPAYSPEFEAWKASLETSEAGIVSPVSAARRLNSNPVLKAQYDKLVPDAVSHDEFWERYLFRVALLQDKLAAASRKQTIEEPTNDPVMANLPLESQPQTPEKVPEKVPIIENEKNYENEDIDNVVTWEDEDFAHDVELTEEQQTLLLEEYEREIASKKLAKQNTTCDSVNNNNNKADNPTKKSTNKTTDNMNNRNIDKNKHGRTPEKAGKLDPCGNNLVEDYFADKEVKDDASANSDESWEKDFEIDDVKQKA

Uniprot

H9J4D0   A0A2A4K9W8   A0A2H1WEM9   A0A194QGU6   A0A212FPN2   A0A1E1W6V5   + More
A0A194QQC0   A0A067RGY3   U4U5C5   N6TVE5   V5GST6   A0A1W4WYT3   A0A1L8DD31   A0A1L8DDA9   A0A1B0GJG1   A0A1B0DC90   U5EYA1   A0A1L8DBD8   A0A0K8TQH8   A0A146L0H8   A0A0A9WID6   Q17NA7   A0A1S4EWS1   A0A182HA80   A0A336MS47   Q17NA8   A0A023EUJ2  

Pubmed

19121390    26354079    22118469    24845553    23537049    26369729    + More
26823975    25401762    17510324    26483478    24945155   

EMBL

BABH01022101    NWSH01000004    PCG81021.1    ODYU01008148    SOQ51511.1    KQ459053    + More
KPJ04160.1    AGBW02002142    OWR55659.1    GDQN01008370    JAT82684.1    KQ461181    KPJ07702.1    KK852513    KDR22283.1    KB632046    ERL88267.1    APGK01059422    KB741293    ENN70257.1    GALX01003779    JAB64687.1    GFDF01009718    JAV04366.1    GFDF01009719    JAV04365.1    AJWK01020278    AJVK01013947    AJVK01013948    GANO01002129    JAB57742.1    GFDF01010397    JAV03687.1    GDAI01000999    JAI16604.1    GDHC01017867    JAQ00762.1    GBHO01036443    GBRD01002168    JAG07161.1    JAG63653.1    CH477201    EAT48146.1    JXUM01122225    JXUM01122226    KQ566582    KXJ70002.1    UFQS01001592    UFQT01001592    SSX11530.1    SSX31097.1    EAT48147.1    GAPW01001464    JAC12134.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000027135    + More
UP000030742    UP000019118    UP000192223    UP000092461    UP000092462    UP000008820    UP000069940    UP000249989   

PRIDE

H9J4D0   

Pfam

PF03909   BSD        + More
PF11411   DNA_ligase_IV

Interpro

IPR035925   BSD_dom_sf        + More
IPR005607   BSD_dom       
IPR036420   BRCT_dom_sf       
IPR021536   DNA_ligase_IV_dom       

Gene 3D

1.10.3970.10     3.40.50.10190    

ProteinModelPortal

H9J4D0   A0A2A4K9W8   A0A2H1WEM9   A0A194QGU6   A0A212FPN2   A0A1E1W6V5   + More
A0A194QQC0   A0A067RGY3   U4U5C5   N6TVE5   V5GST6   A0A1W4WYT3   A0A1L8DD31   A0A1L8DDA9   A0A1B0GJG1   A0A1B0DC90   U5EYA1   A0A1L8DBD8   A0A0K8TQH8   A0A146L0H8   A0A0A9WID6   Q17NA7   A0A1S4EWS1   A0A182HA80   A0A336MS47   Q17NA8   A0A023EUJ2  

KEGG

101740903    no KO assigned | (RefSeq) BSD domain-containing protein 1-B-like

GO

GO:0003910  

Length:

396

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01757

outside

1  -  396

 

 

Pi

24.466323

Theta

180.97551

Tajima's D

-1.329003

CLR

0.180195

CSRT

0.0872456377181141

Interpretation

Uncertain