Gene

KWMTBOMO11993  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004496

Annotation

PREDICTED:_tetratricopeptide_repeat_protein_4_[Papilio_machaon]

Location

Bomo_Chr20(+):4833559-4836694      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.395 Nuclear   Reliability : 2.22

CDS

ATGGCCGAGGCTAATAAAAGTGATGTAAAATCCCCAATGACCGAAGAGGAGAGATTAGAGTTGTGCCAGAAGCTAGACAAAGAGCTAGATGACTTTATAGACAGCTTAGAAAAGAGGAGGTATACTGAGGGTTGGCCTGAAGATAGATGGGAGGAGGAAATGGACAAACATCCATTTTTTATGAAGTCAACTCCTGAAAATGGTGAGCTTTCTCCACTGGCAGAGGGTCTCGCAAATCTCAAGTTTGATCCAGAAGAAAACACACCTGTTGAACTAGCTAGTAATTACAAAGAGGATGGAAATTTCAATTTCAAACACAAGAATTATAGACTTGCAATATTAGGGTACACCGAAGGTATAAAACAAAGATGTGATAATGCTGAGATTAATGCCAGTTTGTACAACAACCGTGCTGCTGCCCACTGGCATTTAAAGAACTTCAGATCTGCACTCGGAGACAGTGAAAAAGCGTTATCTTTCAGTTCTAATCATACTAAAGCTAAAATACGAGCTGCTAAGTCAGCATTTCAAATAGCAAAGTACCAGACCTGTATAAAATACTGTGAAGAGATCTTAGAAAATACAAAGGATAAGGACATTTCTGAACTCCTGAGTAATGCTAAGAAAAAGAAAATAATAATGGAAAGAGATCAAAGGAAACAGGCTCGTAATATACAAAATATTACGGAGCAAAAAGACGCGGTACTCAAAGCCATAATAGAACGAGGAATCAAAATATCCAATTGTGATGACGAAGATGACATTGACCTCTCGAAACTTGAGCCAAGTCTTCCTGGAGCTCACGATGCTATAGTACACGTGGAAGATGGATTACTAAAATGGCCCGTGTTATTTTTATATCCAGAATACCAAATGACTGACTTCGTACGTGGTTGCCCTGAGAATGTGCCGCTTTCTTGTCAGTTGGAGCAGCTATTCCCAGCTCCGTGGGACGAAAAAAATAAATACAGTGTTGCCAGTGTAAATATTTATTTCGAAGGTTACGATAAAATGCCGCACGTCATTGATCCGTCAAAGAATTTGGGGGATCTGCTGGTAGCGAAATATTTCGAATTGAGAGCCGGCACCCCAGCGTTTTTCGTGTTGCCGCGCGGTAGCAAGATCGAAAGTCGGTTTTTGGAAAATTATATTTAG

Protein

MAEANKSDVKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLANLKFDPEENTPVELASNYKEDGNFNFKHKNYRLAILGYTEGIKQRCDNAEINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKYCEEILENTKDKDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKISNCDDEDDIDLSKLEPSLPGAHDAIVHVEDGLLKWPVLFLYPEYQMTDFVRGCPENVPLSCQLEQLFPAPWDEKNKYSVASVNIYFEGYDKMPHVIDPSKNLGDLLVAKYFELRAGTPAFFVLPRGSKIESRFLENYI

Uniprot

H9J4Q6   A0A2A4KBF3   A0A2H1WEK3   A0A194QQC5   A0A3S2LFP0   A0A212F1P4   + More
I4DPI4   A0A0N1IBA9   A0A194QGV1   S4NQJ1   A0A1B6LRU7   A0A1B6GGZ7   A0A158NNK6   A0A2A3E5V1   A0A088A5C0   E9IYX4   A0A0L7R873   A0A154P109   A0A310SCT1   E2BLB6   A0A0M8ZNP6   F4WQK0   A0A067R7Q2   A0A195B359   A0A3L8E262   A0A195DKT2   A0A151I9L5   A0A195F890   A0A151X954   N6TQY1   A0A1B6EEP6   A0A2J7PBU8   B4MNP7   B4H549   B5E1A4   D2A4U6   A0A034WJL7   E0VSH0   A0A0K8W5J3   B4J7A9   A0A3B0JKQ9   B3NB46   B4P0Y9   W8BR50   A0A182J5L0   A0A1W4VF52   B4QDA5   B4KN86   A0A182JQT1   K7IXL6   A0A0C9RG86   B4LMU2   A0A232EMR7   B4HPW4   Q6NMU5   A0A336MPM7   A0A336MXN0   A0A182YCD6   A1Z6M6   A0A1I8JTC5   Q7PZR6   A0A182PV59   A0A182VGQ7   A0A182TKK3   A0A0L0CN92   A0A1A9XHW9   A0A182G7S6   A0A0A1WKC3   A0A026WKX9   A0A1A9VJD6   A0A1I8PNE6   A0A1B0DCI9   U5EXG1   A0A1B0GBE8   A0A084VIL5   A0A1B0B4H1   A0A1Y9J0Z2   A0A182RSS4   A0A182KTG0   A0A182MQI5   A0A2P8YV00   E9GW62   E2AJA0   A0A1L8DTZ6   A0A1Q3F4W4   B0WYL6   Q16XX5   B3MJ41   A0A182Q4P6   A0A2M4ATP2   A0A1I8MMT6   A0A2M4BQK5   A0A2M4CZ16   A0A2M4CZ77   A0A182NPR7   A0A2J7PBV1   A0A182FT99   A0A182WCY7   A0A0P5FV55  

Pubmed

19121390    26354079    22118469    22651552    23622113    21347285    + More
21282665    20798317    21719571    24845553    30249741    23537049    17994087    15632085    18362917    19820115    25348373    20566863    17550304    24495485    22936249    20075255    28648823    25244985    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12364791    14747013    17210077    26108605    26483478    25830018    24508170    24438588    20966253    29403074    21292972    17510324    25315136   

EMBL

BABH01022097    BABH01022098    NWSH01000004    PCG81002.1    ODYU01008148    SOQ51515.1    + More
KQ461181    KPJ07707.1    RSAL01000153    RVE45701.1    AGBW02010837    OWR47660.1    AK403623    BAM19824.1    KQ458392    KPJ05918.1    KQ459053    KPJ04165.1    GAIX01011524    JAA81036.1    GEBQ01013565    JAT26412.1    GECZ01008063    JAS61706.1    ADTU01021644    ADTU01021645    KZ288364    PBC26864.1    GL767077    EFZ14227.1    KQ414633    KOC67028.1    KQ434783    KZC04820.1    KQ777311    OAD52127.1    GL449017    EFN83468.1    KQ435962    KOX67965.1    GL888273    EGI63527.1    KK852886    KDR14373.1    KQ976641    KYM78722.1    QOIP01000001    RLU26289.1    KQ980765    KYN13456.1    KQ978273    KYM95753.1    KQ981744    KYN36274.1    KQ982383    KYQ56915.1    APGK01024006    APGK01024007    KB740529    KB631651    ENN80458.1    ERL85014.1    GEDC01020584    GEDC01000903    JAS16714.1    JAS36395.1    NEVH01027075    PNF13813.1    CH963848    EDW73736.1    CH479210    EDW32885.1    CM000071    EDY69492.1    KQ971344    EFA05800.2    GAKP01004410    JAC54542.1    DS235751    EEB16326.1    GDHF01005928    JAI46386.1    CH916367    EDW02127.1    OUUW01000001    SPP74059.1    CH954177    EDV59811.1    CM000157    EDW89063.1    GAMC01002780    JAC03776.1    CM000362    CM002911    EDX05892.1    KMY91758.1    CH933808    EDW09939.1    AAZX01005632    GBYB01012142    JAG81909.1    CH940648    EDW61033.1    NNAY01003318    OXU19631.1    CH480816    EDW46633.1    BT011560    AAS15696.1    UFQT01001373    SSX30237.1    UFQT01003468    SSX35026.1    AE013599    BT132984    AAF57368.2    AEX31654.1    AGB93262.1    APCN01002450    AAAB01008986    EAA00449.3    JRES01000171    KNC33687.1    JXUM01150870    KQ571096    KXJ68246.1    GBXI01015156    JAC99135.1    KK107159    EZA56707.1    AJVK01005127    GANO01002553    JAB57318.1    CCAG010013992    ATLV01013368    KE524854    KFB37809.1    JXJN01008310    AXCM01008233    PYGN01000344    PSN48066.1    GL732569    EFX76323.1    GL439967    EFN66540.1    GFDF01004163    JAV09921.1    GFDL01012444    JAV22601.1    DS232191    EDS37093.1    CH477530    EAT39468.1    CH902619    EDV38135.2    AXCN02001663    GGFK01010854    MBW44175.1    GGFJ01006225    MBW55366.1    GGFL01006398    MBW70576.1    GGFL01006397    MBW70575.1    PNF13814.1    GDIQ01257118    LRGB01000024    JAJ94606.1    KZS21729.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000283053    UP000007151    UP000053268    + More
UP000005205    UP000242457    UP000005203    UP000053825    UP000076502    UP000008237    UP000053105    UP000007755    UP000027135    UP000078540    UP000279307    UP000078492    UP000078542    UP000078541    UP000075809    UP000019118    UP000030742    UP000235965    UP000007798    UP000008744    UP000001819    UP000007266    UP000009046    UP000001070    UP000268350    UP000008711    UP000002282    UP000075880    UP000192221    UP000000304    UP000009192    UP000075881    UP000002358    UP000008792    UP000215335    UP000001292    UP000076408    UP000000803    UP000075840    UP000007062    UP000075885    UP000075903    UP000075902    UP000037069    UP000092443    UP000069940    UP000249989    UP000053097    UP000078200    UP000095300    UP000092462    UP000092444    UP000030765    UP000092460    UP000076407    UP000075900    UP000075882    UP000075883    UP000245037    UP000000305    UP000000311    UP000002320    UP000008820    UP000007801    UP000075886    UP000095301    UP000075884    UP000069272    UP000075920    UP000076858   

PRIDE

H9J4Q6    Q6NMU5    A1Z6M6   

Pfam

PF02297   COX6B        + More
PF16042   DUF4794

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR036549   Cyt_c_oxidase_su6B_sf       
IPR003213   Cyt_c_oxidase_su6B       
IPR032011   DUF4794       

SUPFAM

SSF48452   SSF48452        + More
SSF47694   SSF47694       

Gene 3D

1.25.40.10     1.10.10.140    

ProteinModelPortal

H9J4Q6   A0A2A4KBF3   A0A2H1WEK3   A0A194QQC5   A0A3S2LFP0   A0A212F1P4   + More
I4DPI4   A0A0N1IBA9   A0A194QGV1   S4NQJ1   A0A1B6LRU7   A0A1B6GGZ7   A0A158NNK6   A0A2A3E5V1   A0A088A5C0   E9IYX4   A0A0L7R873   A0A154P109   A0A310SCT1   E2BLB6   A0A0M8ZNP6   F4WQK0   A0A067R7Q2   A0A195B359   A0A3L8E262   A0A195DKT2   A0A151I9L5   A0A195F890   A0A151X954   N6TQY1   A0A1B6EEP6   A0A2J7PBU8   B4MNP7   B4H549   B5E1A4   D2A4U6   A0A034WJL7   E0VSH0   A0A0K8W5J3   B4J7A9   A0A3B0JKQ9   B3NB46   B4P0Y9   W8BR50   A0A182J5L0   A0A1W4VF52   B4QDA5   B4KN86   A0A182JQT1   K7IXL6   A0A0C9RG86   B4LMU2   A0A232EMR7   B4HPW4   Q6NMU5   A0A336MPM7   A0A336MXN0   A0A182YCD6   A1Z6M6   A0A1I8JTC5   Q7PZR6   A0A182PV59   A0A182VGQ7   A0A182TKK3   A0A0L0CN92   A0A1A9XHW9   A0A182G7S6   A0A0A1WKC3   A0A026WKX9   A0A1A9VJD6   A0A1I8PNE6   A0A1B0DCI9   U5EXG1   A0A1B0GBE8   A0A084VIL5   A0A1B0B4H1   A0A1Y9J0Z2   A0A182RSS4   A0A182KTG0   A0A182MQI5   A0A2P8YV00   E9GW62   E2AJA0   A0A1L8DTZ6   A0A1Q3F4W4   B0WYL6   Q16XX5   B3MJ41   A0A182Q4P6   A0A2M4ATP2   A0A1I8MMT6   A0A2M4BQK5   A0A2M4CZ16   A0A2M4CZ77   A0A182NPR7   A0A2J7PBV1   A0A182FT99   A0A182WCY7   A0A0P5FV55  

PDB

6HFT     E-value=3.18949e-14,     Score=190

KEGG

101740484    no KO assigned | (RefSeq) tetratricopeptide repeat protein 4

GO

GO:0005634   GO:0016021   GO:0005739   GO:0005515   GO:0008168   GO:0001510   GO:0016422   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

Length:

384

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00259

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03257

outside

1  -  384

 

 

Pi

223.711467

Theta

22.81067

Tajima's D

-0.928453

CLR

0.662315

CSRT

0.151042447877606

Interpretation

Uncertain