Gene

KWMTBOMO11988

Pre Gene Modal

BGIBMGA004264

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_17.6_[Exaiptasia_pallida]

Location

Bomo_Chr20(+):4796109-4797593      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.064

CDS

ATGACTGAAACATCCACAACAAACATGGTGTCAGGTGTGGGGTTCCTGCCACTTTTACCCAGTATGGATTTCAAAGGTAACCTTGCCGAAAATTTCAAAATGTATCGTCAAAGGTTGGAGATATATTTGTCTGCTAATGGCCTTGATGACGCCAAAGACAAAAGAAAAATATCAATTCTGCTGAATTTTATTGGCGAAAACGGAATCAAAATCTACAATTCTTTCAACTTAAACGCATCTGAATCACATACTTTTGAACACGTGCTCAAAAAGTTTGAAGCGTACTTTGAACCAAAGAAAAGTCTAACTATAGCAAGGAACGAGTTTTTTACTGTTACACAAGATGAAGACAGGTTGGAGGATTACTTTCAAAGAGTAATAAATCTCGGTATTCAATGCGAACTTGGAGATCTCAGAGAAGGGTTGACAGTGGGAAAGATAATTTCAGGGTTAGACTCCAAATATAATAATCTCAAAACACGATTAATGTCGGAAGACGATAGTAAATTAACATTAGATTATGTTATGAAATACTTACTGAGTGCCGAAACCTCTAGAAAATATATAGAAGAAAAAACAAATTCAAAGGACAGCGATGAGTCCTCCATCCTATATGTTAATAAAAAATCAATAAGGAACTGTAGAAACTGTGGCACATCTCACAATATAAATAAATGCCCAGCATACGGCAAGGAGTGTCTGAAGTGCAAGAAACTTAACCATTTTAGTAAAGTATGCAGATCAGCCAAGAAACCAAATTTTTATCAAAAGCAAGTCAATGTCCTTGAGGATCCAGATAGGAACAAAGAGGATGAAGCTGAAGGAGATTTCTTTGTTGGTTATGCAGGCAATGAAATAATTCAAGATTTTACAGTCAATAACATCAAAATTCCCATCAAAATGGACACTGGAGCTGCATGCAACGTGATTGGGAGTGAATGA

Protein

MTETSTTNMVSGVGFLPLLPSMDFKGNLAENFKMYRQRLEIYLSANGLDDAKDKRKISILLNFIGENGIKIYNSFNLNASESHTFEHVLKKFEAYFEPKKSLTIARNEFFTVTQDEDRLEDYFQRVINLGIQCELGDLREGLTVGKIISGLDSKYNNLKTRLMSEDDSKLTLDYVMKYLLSAETSRKYIEEKTNSKDSDESSILYVNKKSIRNCRNCGTSHNINKCPAYGKECLKCKKLNHFSKVCRSAKKPNFYQKQVNVLEDPDRNKEDEAEGDFFVGYAGNEIIQDFTVNNIKIPIKMDTGAACNVIGSE

Uniprot

A0A2G8L9H5   A0A3B3C9X5   A0A3P9HT22   A0A3P8Q6C6   X1WTY2   A0A2G8KKG5   + More
A0A3P9M8I3   A0A1A8UGA0   A0A3B3HLX7   A0A087U9K1   A0A3B1JKR1   A0A3P8S414   A0A2S2N8I3   A0A2S2NL10   A0A1A8IVJ0   A0A212FHD4   A0A1S4E819   A0A1A8D4P4   A0A1Y1MUX5   A0A146SN99   A0A1Y1M671   A0A3B3I1S4   A0A146S5H9   A0A1S3DM59   A0A1Y1MCJ7   A0A3P9HXP1   L7LWW6   A0A3Q0J4U3   A0A1Y1NN34   A0A069DZS8   A0A1Y1LR12   A0A069DY08   A0A2A4K615   A0A1A8JBP0   A0A3P8QAD1   J9M4C2   A0A146TAZ6   A0A2G8LMB1   I3KX76   A0A075EIL5   A0A0A9Z4Y4   A0A1I8NEP4   A0A1I8NEN3   A0A1I8NEQ0   A0A1I8NEP7   A0A2G8KBJ0   A0A1Y1NHV7   I3KYE2   X1XQZ7   A0A3Q0J653   T1I2W9   A0A3P9AYU2   A0A2S2NI46   T1IA98   A0A3P8RKT7   A0A023EY30   A0A146LC45   A0A1S3JEC7   A0A3S3NA82   A0A1S3DS68   A0A3P8PD24   A0A3Q0J548   A0A1S3ICH8   J9LDY4   A0A1B8XWD8   A0A3Q0JFZ1   A0A151IWV0   A0A2G8KB94   A0A3P8RHF8   J9LNB8   A0A1Y1LNL5   J9JQ26   A0A3Q0JKH1   A0A3Q0JLN5   A0A087UXZ8   A0A1Y1KPK9   A0A2G8KHQ8   T1HVY1   A0A1Y1LZ99   A0A3S2NM47   A0A1S3HTD1   A0A1L8H7D0   A0A1A8B469   A0A1Y1K454   A0A1Y1JV53   A0A2G8KFU3   J9LYD2   A0A224Z9B6   A0A151X058   A0A2G8L310   A0A1S3DNR0   A0A2G8KVE9   A0A1S3DH71   A0A1S3DM37   J9K926   A0A1Y1NAD7   A0A1Y1LB52  

Pubmed

29023486    29451363    17554307    25329095    22118469    28004739    + More
25576852    26334808    25186727    25201971    25401762    25315136    25474469    26823975    20431018    27762356    28797301   

EMBL

MRZV01000161    PIK56894.1    ABLF02013930    ABLF02013934    MRZV01000519    PIK48493.1    + More
HADY01023773    HAEJ01006887    SBS47344.1    KK118858    KFM74040.1    GGMR01000868    MBY13487.1    GGMR01005013    MBY17632.1    HAED01014930    SBR01375.1    AGBW02008504    OWR53150.1    HADZ01022257    SBP86198.1    GEZM01020000    JAV89472.1    GCES01104253    JAQ82069.1    GEZM01041944    JAV80090.1    GCES01110503    JAQ75819.1    GEZM01035137    JAV83383.1    GACK01009641    JAA55393.1    GEZM01001974    JAV97427.1    GBGD01000115    JAC88774.1    GEZM01050758    JAV75411.1    GBGD01000119    JAC88770.1    NWSH01000088    PCG79705.1    HAED01020456    SBR07020.1    ABLF02038957    GCES01096219    JAQ90103.1    MRZV01000033    PIK61397.1    AERX01076149    KF319019    AIE48224.1    GBHO01004090    JAG39514.1    MRZV01000718    PIK45343.1    GEZM01001973    JAV97431.1    AERX01070080    ABLF02041865    ACPB03002101    ACPB03002102    ACPB03002103    GGMR01004179    MBY16798.1    ACPB03019169    GBBI01004745    JAC13967.1    GDHC01013957    JAQ04672.1    NCKU01019406    RWR98729.1    ABLF02010707    KV461054    OCA14957.1    KQ980844    KYN12280.1    MRZV01000723    PIK45255.1    ABLF02008456    GEZM01050997    GEZM01050995    JAV75219.1    ABLF02019772    KK122208    KFM82237.1    GEZM01079607    GEZM01079598    JAV62391.1    MRZV01000576    PIK47528.1    ACPB03023527    GEZM01043682    JAV78912.1    RSAL01000037    RVE51181.1    CM004469    OCT91956.1    HADY01023564    SBP62049.1    GEZM01097791    JAV54106.1    GEZM01102055    GEZM01102054    GEZM01102053    GEZM01102051    JAV52011.1    MRZV01000618    PIK46835.1    ABLF02041541    GFPF01012437    MAA23583.1    KQ982635    KYQ53341.1    MRZV01000245    PIK54530.1    MRZV01000347    PIK51998.1    ABLF02008619    GEZM01011167    JAV93615.1    GEZM01060849    JAV70854.1   

Proteomes

UP000230750    UP000261560    UP000265200    UP000265100    UP000007819    UP000265180    + More
UP000001038    UP000054359    UP000018467    UP000265080    UP000007151    UP000079169    UP000218220    UP000005207    UP000095301    UP000015103    UP000265160    UP000085678    UP000285301    UP000008143    UP000078492    UP000283053    UP000186698    UP000075809   

Pfam

PF00078   RVT_1        + More
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00412   LIM
PF02209   VHP
PF17917   RT_RNaseH

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR001878   Znf_CCHC       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR001781   Znf_LIM       
IPR003128   Villin_headpiece       
IPR036886   Villin_headpiece_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR041373   RT_RNaseH       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF47050   SSF47050       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10     1.10.950.10    

ProteinModelPortal

A0A2G8L9H5   A0A3B3C9X5   A0A3P9HT22   A0A3P8Q6C6   X1WTY2   A0A2G8KKG5   + More
A0A3P9M8I3   A0A1A8UGA0   A0A3B3HLX7   A0A087U9K1   A0A3B1JKR1   A0A3P8S414   A0A2S2N8I3   A0A2S2NL10   A0A1A8IVJ0   A0A212FHD4   A0A1S4E819   A0A1A8D4P4   A0A1Y1MUX5   A0A146SN99   A0A1Y1M671   A0A3B3I1S4   A0A146S5H9   A0A1S3DM59   A0A1Y1MCJ7   A0A3P9HXP1   L7LWW6   A0A3Q0J4U3   A0A1Y1NN34   A0A069DZS8   A0A1Y1LR12   A0A069DY08   A0A2A4K615   A0A1A8JBP0   A0A3P8QAD1   J9M4C2   A0A146TAZ6   A0A2G8LMB1   I3KX76   A0A075EIL5   A0A0A9Z4Y4   A0A1I8NEP4   A0A1I8NEN3   A0A1I8NEQ0   A0A1I8NEP7   A0A2G8KBJ0   A0A1Y1NHV7   I3KYE2   X1XQZ7   A0A3Q0J653   T1I2W9   A0A3P9AYU2   A0A2S2NI46   T1IA98   A0A3P8RKT7   A0A023EY30   A0A146LC45   A0A1S3JEC7   A0A3S3NA82   A0A1S3DS68   A0A3P8PD24   A0A3Q0J548   A0A1S3ICH8   J9LDY4   A0A1B8XWD8   A0A3Q0JFZ1   A0A151IWV0   A0A2G8KB94   A0A3P8RHF8   J9LNB8   A0A1Y1LNL5   J9JQ26   A0A3Q0JKH1   A0A3Q0JLN5   A0A087UXZ8   A0A1Y1KPK9   A0A2G8KHQ8   T1HVY1   A0A1Y1LZ99   A0A3S2NM47   A0A1S3HTD1   A0A1L8H7D0   A0A1A8B469   A0A1Y1K454   A0A1Y1JV53   A0A2G8KFU3   J9LYD2   A0A224Z9B6   A0A151X058   A0A2G8L310   A0A1S3DNR0   A0A2G8KVE9   A0A1S3DH71   A0A1S3DM37   J9K926   A0A1Y1NAD7   A0A1Y1LB52  

PDB

2BL6     E-value=0.0317176,     Score=86

KEGG

NA   

GO

GO:0003676   GO:0015074   GO:0008270   GO:0004190   GO:0046872   GO:0007010   GO:0003779   GO:0005840   GO:0006412   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

Length:

313

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.32237

Exp number, first 60 AAs:

0.31168

Total prob of N-in:

0.08612

outside

1  -  313

 

 

Pi

6.386078

Theta

15.605955

Tajima's D

-1.183965

CLR

199.338417

CSRT

0.106344682765862

Interpretation

Uncertain