Gene

KWMTBOMO11987  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004374

Annotation

ribosomal_protein_S12_[Bombyx_mori]

Location

Bomo_Chr20(-):4788495-4792648      View in EpiBrowser

Full name

40S ribosomal protein S12      

Location in the cell

Cytoplasmic   Reliability : 3.29

CDS

ATGGCTGATGTTGAAGTCGAGGTCCCCACCAACCCCATCTTGTCGGGTAACAACATGGACGTGAATGTAGCACTGCAAGAGGTGCTAAAGACAGCTTTAATCCATGGTGGTCTTGTGCACGGTCTTCACGAAGCCGCTAAAGCTCTTGACAAGAGGCAAGCAGTACTATGTGTTTTGGCTGAGAACTGTGATGAAGCCGCATACAAGAAACTTGTTCAGGCTCTGTGCAACGAACATCAGATTCCACTGGTCAAGGTTGACAACAACAAAAAGCTTGGAGAATGGGCTGGTCTCTGCAAGATTGACAAGGATGGCAAGGCAAGGAAAATTGTCGGCTGCTCCTGTGTTGTCATCAAAGATTTCGGCGAGGAAACTCCAGCGTTGGATGTGCTCAAGGACTACCTCAAGTCGTCGAGCTAA

Protein

MADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLKSSS

Similarity

Belongs to the eukaryotic ribosomal protein eS12 family.

Keywords

3D-structure   Complete proteome   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  40S ribosomal protein S12

Uniprot

Q5UAN1   A0A2W1BBY4   Q962R7   A0A2A4K9W9   I4DIL6   Q6F464   + More
A0A286RW33   S4NN75   G0ZEE1   A0A3G1T1P6   A0A212ELT7   D1LYL9   E7DZ22   A0A2H1WRS6   I4DM06   A0A194QVX0   D1M803   V5GNL8   D6WSE1   E0VH98   K7IVQ7   A0A232EVW7   A0A026WRR2   A0A154PPW4   A0A158NC74   E2BU47   A0A0J7NTF7   E2A1Q8   A0A088AI57   A0A2A3EBC1   V9ILJ0   A0A067RAL2   A0A151HZQ2   Q56FH0   A0A151WFH3   A0A151IK41   F4WYW4   A0A195EBM2   A0A195FAD5   A0A158NC75   A0A1B6JYT5   A0A3L8DDA6   A0A1B6JZT9   Q4GXS5   A0A310STQ2   A0A182RD73   A0A182IL18   A0A2M3YXP7   A0A2M3ZZ63   A0A182FTL8   B6DDS5   A0A182MT80   A0A182WDS8   A0A182P5B7   T1DPF9   Q8MTJ6   A0A182JS29   A0A1Y1K6Y2   A0A0L7RFM7   A0A182V7W3   A0A182N3V5   A0A182TP33   A0A182WUE2   Q7PSP8   A0A182HW33   A0A182QNE5   Q6EUZ2   U4TUS6   U5EMJ2   N6UL80   A0A2A4AWW2   A0A1D1Z6U9   A0A336MTS9   A0A1B6LIG8   A0A0M4ELH5   B4K004   B4MM63   A0A1L8DS04   A0A1B0CJM1   A0A0J9RUN8   A0A3B0J3F9   Q2M0C0   B4GRU5   B3MAT8   B4HGN6   Q6XI36   P80455   B3NCY5   A8C9Z6   A0A109NHZ7   B4LBH1   B4L0J2   A2I3W4   A0A1A9WSR5   A0A2M3ZZ85   A0A2M4CFY7   A0A1Q3G2U9   Q1HRM3   A0A1B6MSQ0   A0A2P8ZJC6  

Pubmed

19121390    28756777    14668217    22651552    26354079    23622113    + More
22118469    18362917    19820115    20566863    20075255    28648823    24508170    21347285    20798317    24845553    21719571    30249741    19178717    20920257    23761445    28004739    12364791    14747013    17210077    23537049    17994087    18057021    22936249    15632085    14525923    17550304    10731132    12537572    12537569    23636399    17760985    17204158    17510324    29403074   

EMBL

BABH01022090    AY769327    AAV34869.1    KZ150239    PZC71931.1    AF400209    + More
AAK92181.1    NWSH01000004    PCG81007.1    AK401134    KQ459053    BAM17756.1    KPJ04170.1    AB180426    BAD26670.1    MF680469    ASW30992.1    GAIX01012354    JAA80206.1    JF265019    AEL28850.1    MG992445    AXY94883.1    AGBW02013984    OWR42438.1    GU084293    ACY95326.1    HQ424725    ADT80669.1    ODYU01010539    SOQ55717.1    AK402324    BAM18946.1    KQ461181    KPJ07711.1    GU120427    ACY71277.1    GALX01002742    JAB65724.1    KQ971352    EFA06382.1    DS235165    EEB12754.1    NNAY01001950    OXU22476.1    KK107119    EZA58712.1    KQ435026    KZC13945.1    ADTU01011670    GL450581    EFN80764.1    LBMM01001811    KMQ95705.1    GL435766    EFN72731.1    KZ288293    PBC29018.1    JR053653    AEY61988.1    KK852591    KDR20708.1    KQ976642    KYM78669.1    AY961530    AAX62432.1    KQ983211    KYQ46582.1    KQ977258    KYN04628.1    GL888463    EGI60618.1    KQ979236    KYN22187.1    KQ981727    KYN37172.1    GECU01003357    JAT04350.1    QOIP01000009    RLU18455.1    GECU01002980    JAT04727.1    AM048948    CAJ17185.1    KQ760495    OAD60113.1    GGFM01000267    MBW21018.1    GGFK01000478    MBW33799.1    EU934285    ADMH02001295    ACI30063.1    ETN63119.1    AXCM01003849    GAMD01003369    JAA98221.1    AY099330    AAM33784.1    GEZM01090653    JAV57219.1    KQ414606    KOC69536.1    AAAB01008816    EAA05221.3    APCN01001462    AXCN02001095    AJ783879    CAH04327.1    KB631600    ERL84527.1    GANO01001004    JAB58867.1    APGK01028608    APGK01028609    KB740694    ENN79447.1    NWMT01000075    PCD00008.1    GDJX01005325    JAT62611.1    UFQT01001942    SSX32193.1    GEBQ01016496    JAT23481.1    CP012525    ALC45201.1    CH916383    EDV98686.1    CH963847    EDW73072.1    EDW73073.1    GFDF01004930    JAV09154.1    AJWK01014737    CM002912    KMY99352.1    OUUW01000002    SPP76164.1    CH379069    EAL31015.2    CH479188    EDW40480.1    CH902618    EDV39172.1    CH480815    EDW41344.1    AY231650    AY231996    CM000159    AAR10019.1    EDW94375.1    X89659    AE014296    AY058531    CH954178    EDV51641.1    EU035820    ABV44722.1    KC507309    AHB12432.1    CH940647    EDW70781.1    CH933809    EDW19161.1    EF070467    ABM55533.1    GGFK01000397    MBW33718.1    GGFL01000055    MBW64233.1    GFDL01000922    JAV34123.1    DQ440071    CH477655    ABF18104.1    EAT37725.1    GEBQ01001068    JAT38909.1    PYGN01000038    PSN56604.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000007266    + More
UP000009046    UP000002358    UP000215335    UP000053097    UP000076502    UP000005205    UP000008237    UP000036403    UP000000311    UP000005203    UP000242457    UP000027135    UP000078540    UP000075809    UP000078542    UP000007755    UP000078492    UP000078541    UP000279307    UP000075900    UP000075880    UP000069272    UP000000673    UP000075883    UP000075920    UP000075885    UP000075881    UP000053825    UP000075903    UP000075884    UP000075902    UP000076407    UP000007062    UP000075840    UP000075886    UP000030742    UP000019118    UP000243750    UP000092553    UP000001070    UP000007798    UP000092461    UP000268350    UP000001819    UP000008744    UP000007801    UP000001292    UP000002282    UP000000803    UP000008711    UP000008792    UP000009192    UP000091820    UP000008820    UP000245037   

PRIDE

Q5UAN1    P80455   

Pfam

PF01248   Ribosomal_L7Ae        + More
PF00327   Ribosomal_L30
PF08079   Ribosomal_L30_N

Interpro

IPR004038   Ribosomal_L7Ae/L30e/S12e/Gad45        + More
IPR029064   L30e-like       
IPR000530   Ribosomal_S12e       
IPR023106   Ribosomal_L30_central_dom_arc       
IPR016082   Ribosomal_L30_ferredoxin-like       
IPR012988   Ribosomal_L30_N       
IPR005998   Ribosomal_L7_euk       
IPR039699   Ribosomal_L7/L30       
IPR036919   L30_ferredoxin-like_sf       
IPR035808   Ribosomal_L7_euk_arc       
IPR018038   Ribosomal_L30_CS       

SUPFAM

SSF55315   SSF55315        + More
SSF55129   SSF55129       

Gene 3D

3.30.1330.30     1.10.15.30     3.30.1390.20    

CDD

cd01657  Ribosomal_L7_archeal_euk

ProteinModelPortal

Q5UAN1   A0A2W1BBY4   Q962R7   A0A2A4K9W9   I4DIL6   Q6F464   + More
A0A286RW33   S4NN75   G0ZEE1   A0A3G1T1P6   A0A212ELT7   D1LYL9   E7DZ22   A0A2H1WRS6   I4DM06   A0A194QVX0   D1M803   V5GNL8   D6WSE1   E0VH98   K7IVQ7   A0A232EVW7   A0A026WRR2   A0A154PPW4   A0A158NC74   E2BU47   A0A0J7NTF7   E2A1Q8   A0A088AI57   A0A2A3EBC1   V9ILJ0   A0A067RAL2   A0A151HZQ2   Q56FH0   A0A151WFH3   A0A151IK41   F4WYW4   A0A195EBM2   A0A195FAD5   A0A158NC75   A0A1B6JYT5   A0A3L8DDA6   A0A1B6JZT9   Q4GXS5   A0A310STQ2   A0A182RD73   A0A182IL18   A0A2M3YXP7   A0A2M3ZZ63   A0A182FTL8   B6DDS5   A0A182MT80   A0A182WDS8   A0A182P5B7   T1DPF9   Q8MTJ6   A0A182JS29   A0A1Y1K6Y2   A0A0L7RFM7   A0A182V7W3   A0A182N3V5   A0A182TP33   A0A182WUE2   Q7PSP8   A0A182HW33   A0A182QNE5   Q6EUZ2   U4TUS6   U5EMJ2   N6UL80   A0A2A4AWW2   A0A1D1Z6U9   A0A336MTS9   A0A1B6LIG8   A0A0M4ELH5   B4K004   B4MM63   A0A1L8DS04   A0A1B0CJM1   A0A0J9RUN8   A0A3B0J3F9   Q2M0C0   B4GRU5   B3MAT8   B4HGN6   Q6XI36   P80455   B3NCY5   A8C9Z6   A0A109NHZ7   B4LBH1   B4L0J2   A2I3W4   A0A1A9WSR5   A0A2M3ZZ85   A0A2M4CFY7   A0A1Q3G2U9   Q1HRM3   A0A1B6MSQ0   A0A2P8ZJC6  

PDB

4V6W     E-value=8.29352e-50,     Score=491

KEGG

732856    K02951 small subunit ribosomal protein S12e | (RefSeq) RpS12; ribosomal protein S12

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0005840   GO:0003735   GO:0022627   GO:0002181   GO:0005622   GO:0015074   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR11843   PTHR11524  

Length:

139

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05635

Exp number, first 60 AAs:

0.05602

Total prob of N-in:

0.12070

outside

1  -  139

 

 

Pi

13.998015

Theta

18.349052

Tajima's D

-1.218793

CLR

182.52519

CSRT

0.0997950102494875

Interpretation

Uncertain