Gene

KWMTBOMO11985  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004375

Annotation

ribosomal_protein_L7_[Bombyx_mori]

Location

Bomo_Chr20(-):4776159-4780188      View in EpiBrowser

Full name

40S ribosomal protein S12      

Location in the cell

Mitochondrial   Reliability : 2.045 Nuclear   Reliability : 1.819

CDS

ATGGTTGCGACTACAGAAAAGAAGGCTGCGGCTACCGACAAGAAGGCTGCGGCCGAGAAGAAGCCCGTCAAAGGGAAGGAAGACAGTAAGAAGCTGCCTGCTGTACCAGAGTCAGTGCTCAAGCATCGTAAGAGGAGAGAGGCTCTTCGCACTAGGAGATTACAGGTTACGCTAAAGAGGCGTTCTTCTGCCATCAAGAAGAAGAGGGAAATCTTCAAGAGGGCTGAACAGTACGTCAAGGAATACCGCATCAAGGAACGTGATGAAATCAGACTAGCCAGACAAGCACGCAATCGTGGCAACTACTACGTTCCCGGGGAAGCCAAATTGGCATTTGTCATCCGAATCCGTGGTATCAACCAAGTTTCACCGAAGGTCCGTAAAGTTCTGCAACTGTTTAGACTGCGCCAAATAAACAATGGTGTGTTTGTACGTCTGAATAAGGCTACTGTGAATATGCTACGTATCGCCGAGCCTTACATTGCTTGGGGATACCCCAACTTAAAGAGTGTCCGTGAGTTAGTATACAAACGTGGATTCGCCAAGCTGAGTGGACAACGTATACCAATCACTTCCAACAGCATTGTTGAGAAGAGGCTCCATAAACACAACATTATCTGTGTTGAGGACCTCATCCATGAGATCTTCACTGTTGGAGAAAAGTTCAAGTACGCGAGTAATTTCCTGTGGCCCTTCAAATTGAACAATCCAACTGGTGGTTGGCGCAAGAAGACCATTCATTATGTCGACGGGGGAGACTTTGGTAACCGCGAAGACAAGATCAACGATCTTCTCAGGAGGATGGTTTAA

Protein

MVATTEKKAAATDKKAAAEKKPVKGKEDSKKLPAVPESVLKHRKRREALRTRRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRMV

Similarity

Belongs to the eukaryotic ribosomal protein eS12 family.

Uniprot

Q5UAT4   D1LYP5   Q8WQI8   A0A2A4KAA3   A0A2W1BDS5   A0A2H1WRS6   + More
E3UKN8   I4DM14   A0A194QQD0   I4DIF8   A0A3G1T1E4   A0A212ELR7   G0ZEC0   S4PWZ6   E7DZ03   Q4GXM4   A0A232FI11   K7J0S3   A0A2J7RA47   A0A067QHS3   A0A0C9R270   A0A0X7YAT8   V5GUD0   A0A224XU70   A0A0J7KI70   A0A023F8H7   A0A195FTA1   A0A158NZ34   A0A151J4K4   A0A1W4WIA5   D6WGZ7   Q4GXM3   R4WII5   A0A154PDA0   A0A151WI82   A0A195CS80   A0A088AN83   A0A2A3ECX6   A0A1B6GUX7   A0A195BM90   A0A161MEE7   D3KCZ3   E2C8R0   D1M7Y2   E9JDA4   A0A146KPF8   A0A1B6K3W6   A0A0A9WE32   A0A0V0G4Y1   A0A026WA73   A0A3L8DWY6   R4G4Q7   A0A348G680   Q4GXM2   J3JXH4   N6TNT3   U4U795   A0A1B6MC01   F4WFN4   A0A1Y1LN34   Q56FB6   Q56FE6   A0A2P8YG68   A0A0L7RG61   E2AL33   Q0PWV5   A0A1D2MLS7   E9FVZ4   A0A0P6FGK6   A0A162SW78   A0A0P4Y6Z6   A0A0P5H1P7   A0A0P6H2X3   A0A1D1XHZ4   A0A0N8A6A0   A0A0P5EXL1   A0A0P5HRT8   A0A0P5GNQ4   A0A226EJL8   A0A0P5B1A6   A0A0P4ZSG7   A0A0P5VJE7   Q5MGK1   A0A1X9H2A3   A0A0U2VCV0   C4WTW7   A0A0U2LEE8   A0A0U2V8S1   C1BTB6   D3PJ74   A0A0U2KCP4   A0A1S6GLS2   A0A0N8CEA5   A0A0U2TL94   A0A1S3H4Q5   A0A0P5RW94   A0A0P5IRN4   A0A0P5ZIY4   A0A0P5EPK2   A0A0N8B0A5  

Pubmed

19121390    14668217    28756777    22651552    26354079    22118469    + More
23622113    28648823    20075255    24845553    25474469    21347285    18362917    19820115    23691247    20798317    21282665    26823975    25401762    24508170    30249741    22516182    23537049    21719571    28004739    29403074    27289101    21292972    16023793    26621068    28043022   

EMBL

BABH01022088    AY769274    AAV34816.1    GU084319    ACY95352.1    AY072288    + More
AAL62469.1    NWSH01000004    PCG81009.1    KZ150239    PZC71934.1    ODYU01010539    SOQ55717.1    HM449912    ADO33047.1    AK402332    BAM18954.1    KQ461181    KPJ07713.1    AK401076    KQ459053    BAM17698.1    KPJ04172.1    MG992361    AXY94799.1    AGBW02013984    OWR42440.1    JF264998    AEL28829.1    GAIX01005923    JAA86637.1    HQ424706    ADT80650.1    AM048999    CAJ17237.1    NNAY01000195    OXU30088.1    NEVH01006578    PNF37703.1    KK853353    KDR08207.1    GBYB01006932    JAG76699.1    KC507329    AHB12452.1    GALX01000692    JAB67774.1    GFTR01004456    JAW11970.1    LBMM01007023    KMQ90113.1    GBBI01001041    JAC17671.1    KQ981276    KYN43532.1    ADTU01004544    KQ980159    KYN17409.1    KQ971321    EFA00135.1    AM049000    CAJ17238.1    AK417235    BAN20450.1    KQ434878    KZC09822.1    KQ983089    KYQ47548.1    KQ977329    KYN03551.1    KZ288292    PBC29142.1    GECZ01003540    JAS66229.1    KQ976444    KYM86238.1    GEMB01000172    JAS02941.1    GU471215    ADC34221.1    GL453676    EFN75670.1    GU120406    ACY71256.1    GL771866    EFZ09294.1    GDHC01020690    JAP97938.1    GECU01001579    JAT06128.1    GBHO01038816    GBRD01006167    JAG04788.1    JAG59654.1    GECL01003735    JAP02389.1    KK107295    EZA52992.1    QOIP01000003    RLU24812.1    GAHY01001145    JAA76365.1    FX985622    BBF97953.1    AM049001    CAJ17239.1    BT127943    AEE62905.1    APGK01057449    KB741280    ENN70905.1    KB632033    ERL88218.1    GEBQ01006521    JAT33456.1    GL888120    EGI67011.1    GEZM01057161    JAV72417.1    AY961584    AAX62486.1    AY961554    AAX62456.1    PYGN01000621    PSN43250.1    KQ414596    KOC69942.1    GL440437    EFN65855.1    DQ675539    ABG74705.1    LJIJ01000903    ODM93841.1    GL732525    EFX88636.1    GDIQ01050382    JAN44355.1    LRGB01000024    KZS21681.1    GDIP01231605    JAI91796.1    GDIQ01236567    JAK15158.1    GDIQ01026053    JAN68684.1    GDJX01026015    JAT41921.1    GDIP01178337    JAJ45065.1    GDIQ01265553    JAJ86171.1    GDIQ01224166    JAK27559.1    GDIQ01239014    JAK12711.1    LNIX01000003    OXA57885.1    GDIP01195795    JAJ27607.1    GDIP01213051    JAJ10351.1    GDIP01099162    JAM04553.1    AY829785    AAV91399.1    KP676382    ALO61092.1    KT754968    ALS04802.1    ABLF02041076    AK340800    BAH71337.1    KT754238    KT754239    ALS04072.1    KT754780    ALS04614.1    BT077845    BT120855    ACO12269.1    ADD24495.1    BT121680    ADD38610.1    KT754240    ALS04074.1    KY357892    AQS22808.1    GDIP01140207    JAL63507.1    KT755071    ALS04905.1    GDIQ01113305    JAL38421.1    GDIQ01208924    JAK42801.1    GDIP01043773    JAM59942.1    GDIQ01269156    JAJ82568.1    GDIQ01225419    JAK26306.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000215335    + More
UP000002358    UP000235965    UP000027135    UP000036403    UP000078541    UP000005205    UP000078492    UP000192223    UP000007266    UP000076502    UP000075809    UP000078542    UP000005203    UP000242457    UP000078540    UP000008237    UP000053097    UP000279307    UP000019118    UP000030742    UP000007755    UP000245037    UP000053825    UP000000311    UP000094527    UP000000305    UP000076858    UP000198287    UP000007819    UP000085678   

PRIDE

Q5UAT4   

Pfam

PF08079   Ribosomal_L30_N        + More
PF00327   Ribosomal_L30
PF01248   Ribosomal_L7Ae
PF00651   BTB

Interpro

IPR018038   Ribosomal_L30_CS        + More
IPR035808   Ribosomal_L7_euk_arc       
IPR036919   L30_ferredoxin-like_sf       
IPR005998   Ribosomal_L7_euk       
IPR039699   Ribosomal_L7/L30       
IPR023106   Ribosomal_L30_central_dom_arc       
IPR016082   Ribosomal_L30_ferredoxin-like       
IPR012988   Ribosomal_L30_N       
IPR000530   Ribosomal_S12e       
IPR029064   L30e-like       
IPR004038   Ribosomal_L7Ae/L30e/S12e/Gad45       
IPR017986   WD40_repeat_dom       
IPR013087   Znf_C2H2_type       
IPR036322   WD40_repeat_dom_sf       
IPR001680   WD40_repeat       
IPR038499   BRO1_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR000210   BTB/POZ_dom       
IPR011333   SKP1/BTB/POZ_sf       

SUPFAM

SSF55129   SSF55129        + More
SSF55315   SSF55315       
SSF50978   SSF50978       
SSF54695   SSF54695       

Gene 3D

1.10.15.30     3.30.1390.20     3.30.1330.30     1.25.40.280     2.130.10.10    

CDD

cd01657  Ribosomal_L7_archeal_euk

ProteinModelPortal

Q5UAT4   D1LYP5   Q8WQI8   A0A2A4KAA3   A0A2W1BDS5   A0A2H1WRS6   + More
E3UKN8   I4DM14   A0A194QQD0   I4DIF8   A0A3G1T1E4   A0A212ELR7   G0ZEC0   S4PWZ6   E7DZ03   Q4GXM4   A0A232FI11   K7J0S3   A0A2J7RA47   A0A067QHS3   A0A0C9R270   A0A0X7YAT8   V5GUD0   A0A224XU70   A0A0J7KI70   A0A023F8H7   A0A195FTA1   A0A158NZ34   A0A151J4K4   A0A1W4WIA5   D6WGZ7   Q4GXM3   R4WII5   A0A154PDA0   A0A151WI82   A0A195CS80   A0A088AN83   A0A2A3ECX6   A0A1B6GUX7   A0A195BM90   A0A161MEE7   D3KCZ3   E2C8R0   D1M7Y2   E9JDA4   A0A146KPF8   A0A1B6K3W6   A0A0A9WE32   A0A0V0G4Y1   A0A026WA73   A0A3L8DWY6   R4G4Q7   A0A348G680   Q4GXM2   J3JXH4   N6TNT3   U4U795   A0A1B6MC01   F4WFN4   A0A1Y1LN34   Q56FB6   Q56FE6   A0A2P8YG68   A0A0L7RG61   E2AL33   Q0PWV5   A0A1D2MLS7   E9FVZ4   A0A0P6FGK6   A0A162SW78   A0A0P4Y6Z6   A0A0P5H1P7   A0A0P6H2X3   A0A1D1XHZ4   A0A0N8A6A0   A0A0P5EXL1   A0A0P5HRT8   A0A0P5GNQ4   A0A226EJL8   A0A0P5B1A6   A0A0P4ZSG7   A0A0P5VJE7   Q5MGK1   A0A1X9H2A3   A0A0U2VCV0   C4WTW7   A0A0U2LEE8   A0A0U2V8S1   C1BTB6   D3PJ74   A0A0U2KCP4   A0A1S6GLS2   A0A0N8CEA5   A0A0U2TL94   A0A1S3H4Q5   A0A0P5RW94   A0A0P5IRN4   A0A0P5ZIY4   A0A0P5EPK2   A0A0N8B0A5  

PDB

4V6W     E-value=2.34636e-81,     Score=767

KEGG

692661    K02937 large subunit ribosomal protein L7e | (RefSeq) RpL7; ribosomal protein L7

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0022625   GO:0000463   GO:0003676  

PANTHER

PTHR11524  

Length:

269

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03138

Exp number, first 60 AAs:

0

Total prob of N-in:

0.23087

outside

1  -  269

 

 

Pi

5.055278

Theta

19.023182

Tajima's D

-2.159547

CLR

26.139972

CSRT

0.00574971251437428

Interpretation

Uncertain