Gene

KWMTBOMO11972  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004379

Annotation

PREDICTED:_sister_chromatid_cohesion_protein_PDS5_homolog_B-B_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr20(-):4445380-4492449      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.4

CDS

ATGGCGGAAATAGTGTACCCGCAAGGCTGCCGCCCAATCACCGATGACCTCGGACCCGACGAGCTTGTGAGAAGACTTAAAGTATTAGCCCATACGTTACAAGGTCTCGGGCAAGATGAGGGTATGTACCAACAGTACATACCGCTCGCCCTGCATCTGGCTGATGAGTTTTTTCTCACTCATTCTTCTAAGGACGTCCAGCTGTTGATAGCTTGCTGCATAGCTGACGTCCTACGGGTGTACGCGCCGGAAGCGCCATACAAAGACCAGGAACAGGTCAAAACTATATTCTTGTTCCTCATAAACCAACTGCAAGGCCTGCGTGATCCAAAGAATCCGGCCTTCAAACGCTACTTTTACTTGTTGGAAAATCTTGCCTACGTCAAGTCATTTAATATGTGCTTCGAACTCGAAGACTGTCAGGAGATATTCTGCGCTCTCTTCTCATTGATGTTCAAGATCGTTAACATAGAGCATTCGACCAAAGTGAAAGCGTTCATGTTAGACGTCCTGTGCCCGTTGATCACGGAGTCGGACGTCGTGTCCAATGAGTTGCTGAACGTGATATTGATCAATCTAGTCGAACCGAACAAGCGGGAACACAAGCACGCCTTCGCACTAGCCAAGGAACTCATCGTGAAGACCAGTGAGACTCTAGAGCCTTATATCCAAGCGTTTTTCAATCACGTTCTAATACTTGGCAAAGAAGAGAAGAGCCTTTTGATATTTTCGAAAGTCTACGAGCTAATATACGAGCTGTACCAGTGTTGTCCGTCTGTGTTACTATCCGTGTTGCCGCAGCTCGAATGCAAGCTGAAGTCTGCTCATTTCCAAGAGAGGCTCAGTGGCGTCGCTTTATTAGCTAGAATGTTCTCTGAACCGGGCTCGCAGCTGGCCAAACAGTACCCGGCTCTGTGGCGGGCCTTCCTCGGCAGGTTCAACGATATCTCCGTACCGATACGCATCAAATGCGTTCAGTACTGCATGCACTTCCTCGTCCACCACCCGGACCTGAGGAAGGACATAACCGAGACCCTGAAACTGAGGCAGCACGACGCCAACGAACAGGTCCGGTATGAGGTCGTCATGGCGATCATCGCGACGGCCCAAAGAGACTTCCAAGCGGTCGCCGAGTCTGAGGACCTCCTTCATTTCGTAAAAGAAAGAACGTTAGATAAGAAGTTTAAAATCAGGAAAGAAGCCATGTCCGGCCTGGCCATGATCTACAAGAAGTTCTTGACCGAAGAAAGCGTGCCGGCCGCTACCGAGAAAGCGGTCCAGTGGATCAAAGACAAAATTCTACACGGTTATTACATGACGGCGTTAGAAGACCGACTTCTAGTCGAGAGGCTTCTGAACACTTCGCTGGTTCCGTACACGTTACAGTCTGCGGTACGGATGAAGAAGCTGTACTACTTGATGTCTAATGTAGACGACAACGCCACGAAAGCGTTCATTGAGTTACAGAAGCACCAACTCGCAGTCCGGCGCACGGTCGCGGAATGGATCGAGTTGCACAGGAAGCCGCCGTCGCCGTCCGTTCAAAAGGAATTGATCGCTAAAGTCTTGCACATAAGTACCAAATTCCTTCCCGAGTCGGTGAAGGCGCAGGAGTTCCTGAACAAGTTCTCGCAGCACATGAAGCAGTCGCCGGAGCTGTTGCAAGGAATGGAGACGATACTAAATCCGAATGTTAGCTGTGAAGTGTGCGTTCGCACTACTTCAAACGTCCTAAAGAAGCTCGGTCAGCCGGTGATGACGAACTTGTACTACAACACTGTCAAGATGCTCTTGGAGCGGGTCAGCTCGGTGATGATCGACCACGAGTCTCTGCTGATACTGGTCGAATACGTCGAGGGCTCCGTCACCGGCATGAACACGACCATAGCCGAGGAATGCGGTATCGACACGAAGAAGGCGGCGGAGCGCGGGCTGAAGCTGCTGGTGATGCTGTCGTTCGTGTTCCCGGCGCACTTCCTGCACGAGGACGTGCTGACCCGCCTCACGTGCATGCTGGAGCTGGACGACGAGGCCGTGGCGCCGCACATCCTCGCCGCGCTCACCTTCCTCGGGAAATACAGGCCGCTTAGCGAAGCGTGCCCCGCCCTGTTCCCGCGACTGATCACCCTGTGCAAAGCCTACGCCGAGGTGGGCTCACCAAAACAAGCCAAGAATGCTGTCAGGTGTTTATTTGTAAACGTGCCAGAACAAAGGACCCAAATATTCACGGAGATATTAGAAACGTTGAAAGCCACATTGAATCCGTATTCAGAACACTACCGGACCGCCATCGTCACTCTGGGACACATCGCGCACAACCTGCCCGACAACTTCCCCGTTCACATCAAGAACATTGTGTCTAGGAAGATCGTAAAGGAGCTGCTGGTGCGCGAGGGGGGCGGCGCGACGGGCGGGGCGGGGGAGAGCTGGTGCCCGGAGCCCGAGCTGCCCGAGGAGACGCGCTGCAAGCTGGAGGGGCTCAAGTGCATGGCGCGCTGGCTGCTCGGCCTCAAGAAGGACGAGCTCTCCGCGCAGAAGACGTTCCGCATGCTCAACGCCTTCATCGTGCACAAGGGAGATCTGCTGCAGCAAAATCGGTTGTCGAAAGCGGAGATGGCGCACCTGAGGCTGGCCGCCGGCGCCGCCATGCTCAAGATATGCGAACAGAAGGGCGTCGGCGACCAGTTCACCGCAGAGCAGTTCTACAACCTGTCTCACCTTATGGTCGATGAAGTACCACAAGTGAGGGAAGCTTTCGCTGCTAAACTACACAAAGGATTATCTAAGGGCATACCGAACAAATGTCTGCCGTTAGACTTCATGGGCATGTACGCGTTGGCCGGCAGAGAGCCCGACAAGCGCATACGGAGCGTCATCCGGCAGTTCATGATGGCCGACGTGGTGAGGAGACGGGAGTACGTTAGGAACATCACAGTCGGCACCAAAGTGGAGCGCGCGGTGTCGCAGCTGCCGCACATCCTGCCCGACTACATGCTGGTGTTCGCGGTGCCCGTCCTCACGCACGACCCCGCCTTCACCGCCTACGACAACGTCGCGCAGCTCAAGATAATCAAGAACTGTCTCTGGTTCACGTTGGAGCCGTTAATAACCCGTAACGATTTCTACTGCTACGGATTCTACAAAAGTCTAATTGAACGTATGAAAGTTCATAAAGACGCGGTGAATGAGATGGACGACGCATTAAATTACAAATTATGGGCGGTTTGCGATTTGGCCATGTCCGTGATATGGGCGAGGTCGACGAGCTTCGAGCTTCGCGAGTTCCCGTCGGACGCGCGCATCCCTACGATGTACTTCGCGCCGCAACCAGAAGACTTCGTCAACACCAGGGTCTTCCTACCGCCCGAACTACAGTTCCAACCGAAGAGGGTGGCGATCGCGCCGGCACAGGACGAAACGCGCATCAGGAAACGTCCGCGATTAGAACGAGAGAACACTAATGATGTAGAGCCCTCGGAAGCGTCGGAAACCCAGATCCAGCTGCCGGGCTTGGAACAGACCCCGGAGACCGACATTGACGAGATGCAGACGAAACGCGAGTGA

Protein

MAEIVYPQGCRPITDDLGPDELVRRLKVLAHTLQGLGQDEGMYQQYIPLALHLADEFFLTHSSKDVQLLIACCIADVLRVYAPEAPYKDQEQVKTIFLFLINQLQGLRDPKNPAFKRYFYLLENLAYVKSFNMCFELEDCQEIFCALFSLMFKIVNIEHSTKVKAFMLDVLCPLITESDVVSNELLNVILINLVEPNKREHKHAFALAKELIVKTSETLEPYIQAFFNHVLILGKEEKSLLIFSKVYELIYELYQCCPSVLLSVLPQLECKLKSAHFQERLSGVALLARMFSEPGSQLAKQYPALWRAFLGRFNDISVPIRIKCVQYCMHFLVHHPDLRKDITETLKLRQHDANEQVRYEVVMAIIATAQRDFQAVAESEDLLHFVKERTLDKKFKIRKEAMSGLAMIYKKFLTEESVPAATEKAVQWIKDKILHGYYMTALEDRLLVERLLNTSLVPYTLQSAVRMKKLYYLMSNVDDNATKAFIELQKHQLAVRRTVAEWIELHRKPPSPSVQKELIAKVLHISTKFLPESVKAQEFLNKFSQHMKQSPELLQGMETILNPNVSCEVCVRTTSNVLKKLGQPVMTNLYYNTVKMLLERVSSVMIDHESLLILVEYVEGSVTGMNTTIAEECGIDTKKAAERGLKLLVMLSFVFPAHFLHEDVLTRLTCMLELDDEAVAPHILAALTFLGKYRPLSEACPALFPRLITLCKAYAEVGSPKQAKNAVRCLFVNVPEQRTQIFTEILETLKATLNPYSEHYRTAIVTLGHIAHNLPDNFPVHIKNIVSRKIVKELLVREGGGATGGAGESWCPEPELPEETRCKLEGLKCMARWLLGLKKDELSAQKTFRMLNAFIVHKGDLLQQNRLSKAEMAHLRLAAGAAMLKICEQKGVGDQFTAEQFYNLSHLMVDEVPQVREAFAAKLHKGLSKGIPNKCLPLDFMGMYALAGREPDKRIRSVIRQFMMADVVRRREYVRNITVGTKVERAVSQLPHILPDYMLVFAVPVLTHDPAFTAYDNVAQLKIIKNCLWFTLEPLITRNDFYCYGFYKSLIERMKVHKDAVNEMDDALNYKLWAVCDLAMSVIWARSTSFELREFPSDARIPTMYFAPQPEDFVNTRVFLPPELQFQPKRVAIAPAQDETRIRKRPRLERENTNDVEPSEASETQIQLPGLEQTPETDIDEMQTKRE

Uniprot

H9J4E0   A0A194Q708   A0A2W1BUQ1   A0A2H1WLS8   A0A2A4JKH4   A0A310SKS4   + More
A0A0L7R2M3   A0A2A3EUL1   A0A154P7W3   A0A087ZNQ7   A0A195FB79   A0A195BT60   A0A158NF75   F4WVU4   A0A158NF74   A0A151XIE7   E2B3F5   A0A151IR54   E9INF7   A0A026WWD3   A0A067QQR7   A0A2J7RSZ5   A0A151IN62   D6WSX6   A0A232FF86   K7J3I2   A0A0C9R3V1   A0A0C9PKD6   A0A1W4XNU4   A0A1B6DQW8   E2AQ60   A0A1B6I2R8   A0A0J7KQ34   A0A1B6DCX1   A0A1B6HA16   A0A1Y1MH37   A0A0M8ZSP8   A0A1B6KX28   A0A224XHZ6   A0A0P4VNF3   T1I6Q8   N6SVK4   A0A1L8DX47   B0WMJ8   U5EGZ1   A0A1Q3EWX1   A0A182IVZ7   Q16GZ2   A0A182PBW3   Q7PRK5   A0A084WLT1   A0A182FTK3   A0A182TXP4   A0A182WRD3   A0A182VD11   W5JJM4   A0A2M4B9X1   A0A2M4ADJ6   A0A3R7Q3R4   A0A182RLX9   A0A182MMY4   A0A182WEA9   A0A182YA92   E0W0E2   A0A182QQC9   A0A182MY81   A0A182GH06   A0A0P5V155   A0A164ZCA7   A0A182I652   A0A0P5HV31   A0A0N8AKP4   A0A336L3C1   A0A336LZC3   A0A0P6ILK0   A0A0P4YB33   A0A0P4XPU0   A0A0N8CNC8   E9H1S4   A0A2P2I100   A0A2S2NZ09   J9K168   A0A2H8TPK4   A0A0P5SDY8   A0A0N8CZQ9   A0A0P5XQX9   A0A0P5WQM6   A0A0P5YAL1   A0A226E5F5   A0A182T084   A0A1D2MX41   A0A1I8P031   A0A182JUB5   A0A0K2UB95   A0A0K2UC00   T1PKR7   A0A1I8NDQ3   A0A2M4AEQ9   A0A1B0AGA6  

Pubmed

19121390    26354079    28756777    21347285    21719571    20798317    + More
21282665    24508170    30249741    24845553    18362917    19820115    28648823    20075255    28004739    27129103    23537049    17510324    12364791    24438588    20920257    23761445    25244985    20566863    26483478    21292972    27289101    25315136   

EMBL

BABH01022063    BABH01022064    KQ459460    KPJ00785.1    KZ149954    PZC76510.1    + More
ODYU01009532    SOQ54031.1    NWSH01001270    PCG71902.1    KQ765071    OAD54147.1    KQ414666    KOC65021.1    KZ288186    PBC34741.1    KQ434839    KZC08016.1    KQ981720    KYN37294.1    KQ976417    KYM89614.1    ADTU01013893    GL888398    EGI61674.1    KQ982080    KYQ60176.1    GL445323    EFN89833.1    KQ981145    KYN09137.1    GL764298    EFZ17911.1    KK107085    QOIP01000008    EZA60046.1    RLU19955.1    KK853131    KDR10918.1    NEVH01000249    PNF43960.1    KQ977019    KYN06274.1    KQ971352    EFA06671.1    NNAY01000337    OXU29108.1    GBYB01001491    JAG71258.1    GBYB01001493    JAG71260.1    GEDC01009233    JAS28065.1    GL441701    EFN64394.1    GECU01026478    JAS81228.1    LBMM01004398    KMQ92458.1    GEDC01013755    JAS23543.1    GECU01036212    JAS71494.1    GEZM01031023    JAV85119.1    KQ435876    KOX70177.1    GEBQ01023979    JAT15998.1    GFTR01008673    JAW07753.1    GDKW01000432    JAI56163.1    ACPB03005106    ACPB03005107    APGK01054748    APGK01054749    APGK01054750    APGK01054751    APGK01054752    KB741253    KB632372    ENN71779.1    ERL93752.1    GFDF01003098    JAV10986.1    DS231998    EDS31069.1    GANO01003240    JAB56631.1    GFDL01015241    JAV19804.1    CH478221    EAT33516.1    AAAB01008848    EAA07063.5    ATLV01024276    ATLV01024277    KE525351    KFB51175.1    ADMH02001295    ETN63105.1    GGFJ01000704    MBW49845.1    GGFK01005544    MBW38865.1    QCYY01002762    ROT67769.1    AXCM01001764    DS235858    EEB19098.1    AXCN02002037    JXUM01062710    JXUM01062711    JXUM01062712    JXUM01062713    JXUM01062714    KQ562212    KXJ76395.1    GDIP01122176    JAL81538.1    LRGB01000745    KZS16196.1    APCN01003562    GDIQ01221833    JAK29892.1    GDIQ01266307    JAJ85417.1    UFQS01001446    UFQT01001446    SSX10923.1    SSX30601.1    UFQS01000339    UFQT01000339    SSX02977.1    SSX23344.1    GDIQ01019866    JAN74871.1    GDIP01239466    JAI83935.1    GDIP01239467    JAI83934.1    GDIP01114823    JAL88891.1    GL732584    EFX74316.1    IACF01001889    LAB67566.1    GGMR01009786    MBY22405.1    ABLF02026515    GFXV01004308    MBW16113.1    GDIQ01094871    JAL56855.1    GDIP01082975    JAM20740.1    GDIP01069931    JAM33784.1    GDIP01082974    JAM20741.1    GDIP01060482    JAM43233.1    LNIX01000006    OXA52853.1    LJIJ01000448    ODM97384.1    HACA01017866    CDW35227.1    HACA01017865    CDW35226.1    KA648538    AFP63167.1    GGFK01005939    MBW39260.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000053825    UP000242457    UP000076502    + More
UP000005203    UP000078541    UP000078540    UP000005205    UP000007755    UP000075809    UP000008237    UP000078492    UP000053097    UP000279307    UP000027135    UP000235965    UP000078542    UP000007266    UP000215335    UP000002358    UP000192223    UP000000311    UP000036403    UP000053105    UP000015103    UP000019118    UP000030742    UP000002320    UP000075880    UP000008820    UP000075885    UP000007062    UP000030765    UP000069272    UP000075902    UP000076407    UP000075903    UP000000673    UP000283509    UP000075900    UP000075883    UP000075920    UP000076408    UP000009046    UP000075886    UP000075884    UP000069940    UP000249989    UP000076858    UP000075840    UP000000305    UP000007819    UP000198287    UP000075901    UP000094527    UP000095300    UP000075881    UP000095301    UP000092445   

PRIDE

H9J4E0   

Interpro

IPR039776   Pds5        + More
IPR016024   ARM-type_fold       
IPR011989   ARM-like       
IPR012675   Beta-grasp_dom_sf       
IPR018163   Thr/Ala-tRNA-synth_IIc_edit       

SUPFAM

SSF48371   SSF48371        + More
SSF55186   SSF55186       

Gene 3D

1.25.10.10     3.10.20.30    

ProteinModelPortal

H9J4E0   A0A194Q708   A0A2W1BUQ1   A0A2H1WLS8   A0A2A4JKH4   A0A310SKS4   + More
A0A0L7R2M3   A0A2A3EUL1   A0A154P7W3   A0A087ZNQ7   A0A195FB79   A0A195BT60   A0A158NF75   F4WVU4   A0A158NF74   A0A151XIE7   E2B3F5   A0A151IR54   E9INF7   A0A026WWD3   A0A067QQR7   A0A2J7RSZ5   A0A151IN62   D6WSX6   A0A232FF86   K7J3I2   A0A0C9R3V1   A0A0C9PKD6   A0A1W4XNU4   A0A1B6DQW8   E2AQ60   A0A1B6I2R8   A0A0J7KQ34   A0A1B6DCX1   A0A1B6HA16   A0A1Y1MH37   A0A0M8ZSP8   A0A1B6KX28   A0A224XHZ6   A0A0P4VNF3   T1I6Q8   N6SVK4   A0A1L8DX47   B0WMJ8   U5EGZ1   A0A1Q3EWX1   A0A182IVZ7   Q16GZ2   A0A182PBW3   Q7PRK5   A0A084WLT1   A0A182FTK3   A0A182TXP4   A0A182WRD3   A0A182VD11   W5JJM4   A0A2M4B9X1   A0A2M4ADJ6   A0A3R7Q3R4   A0A182RLX9   A0A182MMY4   A0A182WEA9   A0A182YA92   E0W0E2   A0A182QQC9   A0A182MY81   A0A182GH06   A0A0P5V155   A0A164ZCA7   A0A182I652   A0A0P5HV31   A0A0N8AKP4   A0A336L3C1   A0A336LZC3   A0A0P6ILK0   A0A0P4YB33   A0A0P4XPU0   A0A0N8CNC8   E9H1S4   A0A2P2I100   A0A2S2NZ09   J9K168   A0A2H8TPK4   A0A0P5SDY8   A0A0N8CZQ9   A0A0P5XQX9   A0A0P5WQM6   A0A0P5YAL1   A0A226E5F5   A0A182T084   A0A1D2MX41   A0A1I8P031   A0A182JUB5   A0A0K2UB95   A0A0K2UC00   T1PKR7   A0A1I8NDQ3   A0A2M4AEQ9   A0A1B0AGA6  

PDB

5HDT     E-value=0,     Score=2093

KEGG

101739387    K11267 sister chromatid cohesion protein PDS5 | (RefSeq) sister chromatid cohesion protein PDS5 homo

GO

GO:0007064   GO:0006281   GO:0005634   GO:0000785   GO:0000166   GO:0005488   GO:0016021   GO:0022857   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR12663  

Length:

1187

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01277

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00023

outside

1  -  1187

 

 

Pi

255.300548

Theta

165.434443

Tajima's D

1.64299

CLR

0.167425

CSRT

0.812759362031898

Interpretation

Uncertain