Gene

KWMTBOMO11939

Pre Gene Modal

BGIBMGA004472

Annotation

PREDICTED:_uncharacterized_protein_LOC105380908_[Plutella_xylostella]

Location

Bomo_Chr20(+):3882477-3883578      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.597

CDS

ATGTCATACGAATCGGACATTAATAAAAGTGAAGTGGAGCAGATTACGGTTACATCGAGAATAGCCGAGTTCTGGGAGGATCAACCCAGGACGTGGTTCATACATGCAGAGTCAGTTCTTTTTAATCAAAAATTATCGGACGACGCCAAGTACCATCTCGTCATTGCCAAACTGGGTAAAAACGTGGTCAGTCAAGTGACAGATATATTAATAAAGCCGCCGAAAGAAAAAAAATATGACACACTCAAGGCCAGACTTTTAGCAATATACGAGGAATCGGAAAGCCACCAGTTGCAGAAGCTCATAGGGGAAATGGAACTGGGCGATCAGAAACCTTCGCAGCTGCTTCGTCGAATGAAAGATTTAGCCCGCGATAAAATCAGCGACGAAACCTTACTCCTTTTGTGGCAGAACCACCTACCAACCTCCGTCCGTGCAGTATTAGTAGTGACGGATAGCAAGGATATCAATACCCTGGCTTCCGTAGCCGACAAGGTAATGGAGACAACCAGGCCAATCTCCATAGGCGAGGTCAATACGGCAGATACAGCTACCTTAATATCGCAAATAGCCAGAATTAATATTCGCCTCGATGAGATCCAGTCGCAGAGGAATGGCCAACGCAGAGAACGGTACAGATACGGATTCCGTGGGCGCTATGCAAACAGAGCGCGATCGAGTTCCCGTGGTCGCCGTAATACGACACCCCATCGCTCAGCAGCTCGTGACGATTGGATGTGCTTCTATCACTACAGATTCAAGGAGCAGGCGCATAAATGCGTGCCGCCGTGTGCGTGGGAGAAGAAGCAGAACCAGTCGGGAAACTAA

Protein

MSYESDINKSEVEQITVTSRIAEFWEDQPRTWFIHAESVLFNQKLSDDAKYHLVIAKLGKNVVSQVTDILIKPPKEKKYDTLKARLLAIYEESESHQLQKLIGEMELGDQKPSQLLRRMKDLARDKISDETLLLLWQNHLPTSVRAVLVVTDSKDINTLASVADKVMETTRPISIGEVNTADTATLISQIARINIRLDEIQSQRNGQRRERYRYGFRGRYANRARSSSRGRRNTTPHRSAARDDWMCFYHYRFKEQAHKCVPPCAWEKKQNQSGN

Uniprot

H9J4N2   A0A2W1BAJ4   A0A2A4JUK3   A0A2H1WB17   A0A2H1V5N9   A0A1E1WLV2   + More
A0A0L7LFW5   A0A2A4JI65   A0A0L7LSS0   A0A0L7L5A2   T1I831   T1HGU2   A0A0L7LFF1   A0A151JF00   A0A2W1BA89   T1IE85   A0A0J7K6L8   A0A0A9YNN7   A0A151K1Q2   A0A1Y1MA44   D7GYF3   A0A139WA14   D7EJX5   A0A0J7K6V1   A0A0K3CPY2   D6WTN9   T1HU96   A0A139W8G7   A0A151K2U9   A0A1I8Q981   A0A2A4J536   K7K066   A0A2L2YSA7   A0A0A9Z2L8   T1IE13   A0A139WPP8   A0A1I8NYN8   A0A139WPG8   A0A026VX87   A0A2A4K2H4   A0A026VRX8   A0A2G8JL30   A0A151JR52   A0A182G9J3   A0A131YM78   A0A151IIJ9   A0A0L7QK36   A0A182H3L9   A0A131Z7F2   A0A151K0A8   A0A151K1K5   A0A224XWW2   A0A1Y1MVP9   A0A0J7K6V3   A0A0K8SFH9   A0A2J7RGP3   K7JX19   A0A2L2YTR5   A0A151IZ47   A0A2J7QH56   A0A1I8Q298   A0A154PMS5   A0A2J7PML8   A0A154NZG0   A0A0N0BJL3   A0A0J7K6I6   A0A0L7QJB5   A0A085NTM8   A0A151ITG2   A0A0P8Y533   A0A085NBV0   A0A182H518   A0A0J7K7T5   A0A2I4C6S2   A0A085N631   A0A0J7NAK0   A0A085M716   A0A182GMM9   A0A147BQI1   W4YWZ1   A0A2J7QJD3   A0A0J7KD10   A0A2G8L3A3   A0A0P8ZL89   A0A0K8SB41  

Pubmed

19121390    28756777    26227816    25401762    28004739    18362917    + More
19820115    23552491    20075255    26561354    24508170    29023486    26483478    26830274    24929829    17994087    29652888   

EMBL

BABH01022003    KZ150191    PZC72412.1    NWSH01000589    PCG75479.1    ODYU01007352    + More
SOQ50042.1    ODYU01000815    SOQ36165.1    GDQN01003070    JAT87984.1    JTDY01001300    KOB74269.1    NWSH01001424    PCG71274.1    JTDY01000162    KOB78510.1    JTDY01002934    KOB70464.1    ACPB03012735    ACPB03011651    KOB74268.1    KQ979024    KYN24351.1    KZ150227    PZC72038.1    ACPB03034542    LBMM01012633    KMQ86093.1    GBHO01008962    JAG34642.1    LKEX01009256    KYN50060.1    GEZM01036621    JAV82564.1    GG695519    EFA13383.1    KQ971745    KYB24749.1    KQ971759    EFA12902.2    LBMM01012923    LBMM01012917    KMQ85926.1    KMQ85930.1    LN877232    CTR11709.1    KQ971355    EFA07205.2    ACPB03016217    KQ973343    KXZ75568.1    LKEY01014428    KYN50445.1    NWSH01003151    PCG66856.1    AAZX01005161    IAAA01053498    IAAA01053499    LAA11042.1    GBHO01005513    JAG38091.1    ACPB03037918    KQ971307    KYB29887.1    KYB29888.1    KK107653    EZA48265.1    NWSH01000267    PCG77880.1    KK111495    EZA46390.1    MRZV01001674    PIK36447.1    KQ978645    KYN29457.1    JXUM01049417    KQ561603    KXJ78027.1    GEDV01008183    JAP80374.1    KQ977516    KYN02153.1    KQ414987    KOC58988.1    JXUM01107723    KQ565168    KXJ71261.1    GEDV01001795    JAP86762.1    KQ981301    KYN43041.1    LKEX01008659    KYN50015.1    GFTR01003955    JAW12471.1    GEZM01019580    GEZM01019578    JAV89619.1    LBMM01012479    KMQ86203.1    GBRD01013927    JAG51899.1    NEVH01003759    PNF40011.1    IAAA01048245    LAA10725.1    KQ980726    KYN14011.1    NEVH01014357    PNF27922.1    KQ434992    KZC13185.1    NEVH01023981    PNF17578.1    KQ434784    KZC04993.1    KQ435713    KOX79334.1    LBMM01013103    KMQ85816.1    LHQN01021927    LHQN01025379    KOC58628.1    KOC58659.1    KL367475    KFD72824.1    KQ981018    KYN10257.1    CH905996    KPU81830.1    KL367519    KFD66946.1    JXUM01111110    KQ565471    KXJ70931.1    LBMM01012075    KMQ86422.1    KL367547    KFD64927.1    LBMM01007548    KMQ89630.1    KL363221    KFD53012.1    JXUM01074757    KQ562849    KXJ75012.1    GEGO01002739    JAR92665.1    AAGJ04150373    NEVH01013558    PNF28672.1    LBMM01009142    KMQ88358.1    MRZV01001127    MRZV01000236    PIK40395.1    PIK54731.1    CH902629    KPU75574.1    GBRD01015841    JAG49985.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000015103    UP000078492    UP000036403    + More
UP000078542    UP000007266    UP000095300    UP000002358    UP000053097    UP000230750    UP000069940    UP000249989    UP000053825    UP000078541    UP000235965    UP000076502    UP000053105    UP000007801    UP000192220    UP000007110   

PRIDE

H9J4N2   

Pfam

PF00078   RVT_1        + More
PF10551   MULE
PF17921   Integrase_H2C2
PF17917   RT_RNaseH
PF00665   rve
PF17919   RT_RNaseH_2

Interpro

IPR001969   Aspartic_peptidase_AS        + More
IPR001995   Peptidase_A2_cat       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR018289   MULE_transposase_dom       
IPR041588   Integrase_H2C2       
IPR041373   RT_RNaseH       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

H9J4N2   A0A2W1BAJ4   A0A2A4JUK3   A0A2H1WB17   A0A2H1V5N9   A0A1E1WLV2   + More
A0A0L7LFW5   A0A2A4JI65   A0A0L7LSS0   A0A0L7L5A2   T1I831   T1HGU2   A0A0L7LFF1   A0A151JF00   A0A2W1BA89   T1IE85   A0A0J7K6L8   A0A0A9YNN7   A0A151K1Q2   A0A1Y1MA44   D7GYF3   A0A139WA14   D7EJX5   A0A0J7K6V1   A0A0K3CPY2   D6WTN9   T1HU96   A0A139W8G7   A0A151K2U9   A0A1I8Q981   A0A2A4J536   K7K066   A0A2L2YSA7   A0A0A9Z2L8   T1IE13   A0A139WPP8   A0A1I8NYN8   A0A139WPG8   A0A026VX87   A0A2A4K2H4   A0A026VRX8   A0A2G8JL30   A0A151JR52   A0A182G9J3   A0A131YM78   A0A151IIJ9   A0A0L7QK36   A0A182H3L9   A0A131Z7F2   A0A151K0A8   A0A151K1K5   A0A224XWW2   A0A1Y1MVP9   A0A0J7K6V3   A0A0K8SFH9   A0A2J7RGP3   K7JX19   A0A2L2YTR5   A0A151IZ47   A0A2J7QH56   A0A1I8Q298   A0A154PMS5   A0A2J7PML8   A0A154NZG0   A0A0N0BJL3   A0A0J7K6I6   A0A0L7QJB5   A0A085NTM8   A0A151ITG2   A0A0P8Y533   A0A085NBV0   A0A182H518   A0A0J7K7T5   A0A2I4C6S2   A0A085N631   A0A0J7NAK0   A0A085M716   A0A182GMM9   A0A147BQI1   W4YWZ1   A0A2J7QJD3   A0A0J7KD10   A0A2G8L3A3   A0A0P8ZL89   A0A0K8SB41  

KEGG

101744209    no KO assigned | (RefSeq) uncharacterized LOC101744209

GO

GO:0004190   GO:0005634   GO:0003676   GO:0015074   GO:0005524  

Length:

275

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00155

Exp number, first 60 AAs:

0.00027

Total prob of N-in:

0.07111

outside

1  -  275

 

 

Pi

44.191235

Theta

87.623879

Tajima's D

-1.456484

CLR

0

CSRT

0.0670466476676166

Interpretation

Uncertain