Gene

KWMTBOMO11935  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004465

Annotation

PREDICTED:_LSP-T_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr20(+):3814017-3817241      View in EpiBrowser

Full name

Microvitellogenin       + More
Low molecular mass 30 kDa lipoprotein 21G1      
Low molecular mass 30 kDa lipoprotein 19G1      
Low molecular 30 kDa lipoprotein PBMHPC-19      
Low molecular 30 kDa lipoprotein PBMHPC-23      
Low molecular 30 kDa lipoprotein PBMHP-12      
Low molecular 30 kDa lipoprotein PBMHP-6      
Low molecular 30 kDa lipoprotein PBMHPC-21      

Location in the cell

Extracellular   Reliability : 1.862

CDS

ATGAAGACCTTGGCGGTTCTCGCGCTTTGCTTGGTAGCTGCTAGCGCTACGCCTTCGATCGACGGGGACGACAGATACCCAATTCATGCACCCAGCGGCTATGAAGATATAGTTACGAACGCCATCATCACCAGAAACTATGAAGCTGCTGCTTCAATGACGGTGCAGCTCAAAAGACGTTCGAGTGGAAGATACATAACAATCATCGTCAACAGGCTGATAAGAGAAAATAAAAGGAATCTCTGTGACCTCGCCTACAAGCTGTGGGATTACATGGATGAGAGCCAAGAGATAGTGAAAGAGTACTTCCCTGTTATATTTAGACAGATATTTTCCGAGAACAGTGTTAAGATCATCAATAAAAGGGACAATCTTGCCATCAAACTGGGCGATGCTTTAGATTCCGATAATGACAGAGTCGCATACGGTGATGCTAATGACAAAACAAGCGACAACGTCGGCTGGAAGTTAATTCCCTTGTGGGATGACAATAGAGTCTACTTCAAGATCTTCAGTGTCCATCGGAACCAATATTTGAAATTAGGCACACGTATTGACGTTGACAATGATCATGGCGTTTACGGAGACGATCGCGCTGACACGCACAGACACCAGTGGTACCTGAAGCCCGTTGAGCTCGAGAACCAGGTCTTGTTCTACATCTACAACCGTCAGTACGATCAGGCCTTGAAACTTGGCAGAAATGTTGACAGCGACGGAGACAGACGCGCGTACTCAAGCTCCAGCAGCGTCGAAGGTCAACCCGAGCTCTACGCCTGGTCTATCTCGATCCTCAACTAA

Protein

MKTLAVLALCLVAASATPSIDGDDRYPIHAPSGYEDIVTNAIITRNYEAAASMTVQLKRRSSGRYITIIVNRLIRENKRNLCDLAYKLWDYMDESQEIVKEYFPVIFRQIFSENSVKIINKRDNLAIKLGDALDSDNDRVAYGDANDKTSDNVGWKLIPLWDDNRVYFKIFSVHRNQYLKLGTRIDVDNDHGVYGDDRADTHRHQWYLKPVELENQVLFYIYNRQYDQALKLGRNVDSDGDRRAYSSSSSVEGQPELYAWSISILN

Miscellaneous

This lipoprotein belongs to the group of structurally related '30 kDa proteins' that comprise major protein components of the fifth (and last) instar larvae and of pupae.
Biosynthesis occurs in a stage-dependent fashion in the fat body.

Similarity

Belongs to the 30 kDa lipoprotein family.

Keywords

Signal   Complete proteome   Lipoprotein   Reference proteome   3D-structure   Secreted  

Feature

chain  Microvitellogenin

Uniprot

H9J4M5   Q75RW3   Q05432   H9J4M4   H9J4M3   H9J4M8   + More
H9J4M7   P19616   Q0VJU3   A0A0B5Z504   Q6Q0S8   D4QGB9   H9J4F6   Q00801   Q00802   H9J4F5   C7A8A3   D4QGC0   E5EVW2   H9B436   P09336   H9B437   H9J4G1   P09338   H9J4G0   H9B450   P09335   A7LIK7   H9B444   H9J4G3   H9J4L5   H9B458   H9J4F9   H9B440   H9B443   P09334   Q17185   C7A8A2   H9J4G4   H9J4L6   H9J4L1   H9J4N4   H9J4N3   A0A385HW64   H9JX32   H9J4E6   P09337   H9J4N1   H9B449   Q76IB6   H9JMX4   H9J4N6   H9B453   E5EVW3   H9B460   H9B448   H9J4E8   H9B451   H9J4G5   H9B447   H9B454   B5BSX5   H9B459   H9B445   A0A194QYV5   A0A2W1BPF5   H9JF68   Q2PQU4   H9B455   A0A194Q636   H9JJC0   H9JJ72   H9JXA6   A0A2A4IYY5   H9J4N5   A0A3G1LBE0   H9JX33   A0A2W1BV38   A0A3G1LBD4   A0A2A4K904   H9J4E7   A0A2W1BZD4   A0A2A4JTT3   H9JVX1   H9B457   A0A2H1WST8  

Pubmed

19121390    26078299    1343778    2583514    2454229    26126120    + More
1883839    21457781    21514389    22948915    3342240    25379889    2002509    12871935    18840462    26354079    28756777    17112968    29175381   

EMBL

BABH01021998    JN977527    AFC87807.1    AB158646    BAD07027.1    D12523    + More
BAA02093.1    BABH01021994    JN977526    AFC87806.1    BABH01021988    BABH01022000    BABH01021999    M28820    J03768    AM293331    CAL25136.1    KM926620    AJI02615.1    AY568957    AAS75435.1    AB553283    BAJ04787.1    BABH01021937    JN977519    AFC87799.1    X54734    X54736    BABH01021941    JN977524    AFC87804.1    FJ214661    ACO35751.1    AB553284    BAJ04788.1    BABH01021936    HM012806    JN977520    ADQ89805.1    AFC87800.1    JN977521    AFC87801.1    X07554    JN977522    AFC87802.1    BABH01021930    BABH01021931    BABH01021932    X07556    BABH01021933    BABH01021934    JN977535    AFC87815.1    X07553    EU024295    ABS71120.1    JN977529    AFC87809.1    BABH01021929    JN977543    AFC87823.1    BABH01021935    JN977525    AFC87805.1    JN977528    AFC87808.1    X07552    X54735    CAA38532.1    FJ214660    ACO35750.1    BABH01021925    JN977523    AFC87803.1    BABH01021908    BABH01022005    BABH01022003    MG799571    AXY55009.1    BABH01043627    BABH01022007    X07555    JN977534    AFC87814.1    AB098260    BAC82630.1    BABH01028980    BABH01022014    JN977538    AFC87818.1    HM012807    ADQ89806.1    JN977545    AFC87825.1    JN977533    AFC87813.1    BABH01022004    JN977536    AFC87816.1    BABH01021921    BABH01026781    JN977532    AFC87812.1    JN977539    AFC87819.1    AB436163    BAG70410.1    JN977544    AFC87824.1    BABH01028979    JN977530    AFC87810.1    KQ460930    KPJ10718.1    KZ149940    PZC76929.1    BABH01026782    JN977537    AFC87817.1    BABH01011413    DQ306881    JN977531    ABC18268.1    AFC87811.1    JN977540    AFC87820.1    KQ459582    KPI98870.1    BABH01036437    JN977541    AFC87821.1    BABH01035696    NWSH01005147    PCG64400.1    BABH01022013    MF497270    AUB45122.1    BABH01043629    KZ149893    PZC78918.1    MF497269    AUB45121.1    NWSH01000017    PCG80765.1    BABH01022006    PZC78944.1    NWSH01000685    PCG74802.1    BABH01040631    JN977542    AFC87822.1    ODYU01010790    SOQ56108.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220   

PRIDE

H9J4M5    Q75RW3    Q05432    H9J4M4    H9J4M3    H9J4M8    + More
H9J4M7    Q6Q0S8    D4QGB9    H9J4F6    Q00801    Q00802    H9J4F5    C7A8A3    D4QGC0    E5EVW2    H9B436    P09336    H9B437    H9J4G1    P09338    H9J4G0    H9B450    P09335    A7LIK7    H9B444    H9J4G3    H9J4L5    H9B458    H9J4F9    H9B440    P09334    Q17185    C7A8A2    H9J4G4    H9J4L6    H9J4L1    H9J4N4    H9J4N3    H9JX32    H9J4E6    P09337    H9J4N1    H9B449    H9JMX4    H9J4N6    H9B453    E5EVW3    H9B460    H9B448    H9J4E8    H9B451    H9J4G5    H9B447    H9B454    B5BSX5    H9B459    H9B445    H9JF68    Q2PQU4    H9B455    H9JJC0    H9JJ72    H9JXA6    H9J4N5    H9JX33    H9J4E7    H9B457   

Pfam

PF03260   Lipoprotein_11

Interpro

IPR042046   Lipoprotein_11_N        + More
IPR004943   Lipoprotein_11       
IPR035992   Ricin_B-like_lectins       

SUPFAM

SSF50370   SSF50370       

Gene 3D

1.10.10.2400    

ProteinModelPortal

H9J4M5   Q75RW3   Q05432   H9J4M4   H9J4M3   H9J4M8   + More
H9J4M7   P19616   Q0VJU3   A0A0B5Z504   Q6Q0S8   D4QGB9   H9J4F6   Q00801   Q00802   H9J4F5   C7A8A3   D4QGC0   E5EVW2   H9B436   P09336   H9B437   H9J4G1   P09338   H9J4G0   H9B450   P09335   A7LIK7   H9B444   H9J4G3   H9J4L5   H9B458   H9J4F9   H9B440   H9B443   P09334   Q17185   C7A8A2   H9J4G4   H9J4L6   H9J4L1   H9J4N4   H9J4N3   A0A385HW64   H9JX32   H9J4E6   P09337   H9J4N1   H9B449   Q76IB6   H9JMX4   H9J4N6   H9B453   E5EVW3   H9B460   H9B448   H9J4E8   H9B451   H9J4G5   H9B447   H9B454   B5BSX5   H9B459   H9B445   A0A194QYV5   A0A2W1BPF5   H9JF68   Q2PQU4   H9B455   A0A194Q636   H9JJC0   H9JJ72   H9JXA6   A0A2A4IYY5   H9J4N5   A0A3G1LBE0   H9JX33   A0A2W1BV38   A0A3G1LBD4   A0A2A4K904   H9J4E7   A0A2W1BZD4   A0A2A4JTT3   H9JVX1   H9B457   A0A2H1WST8  

PDB

4IY9     E-value=3.396e-53,     Score=525

KEGG

692452    no KO assigned | (RefSeq) Lsp-t; LSP-T protein

GO

GO:0005576   GO:0016021   GO:0005615   GO:0008270   GO:0046872   GO:0003676   GO:0008138   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

Subcellular location

  

SignalP

Position:   1 - 16,         Likelihood:  0.998163

 

 

Length:

266

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0821099999999999

Exp number, first 60 AAs:

0.0821099999999999

Total prob of N-in:

0.02688

outside

1  -  266

 

 

Pi

148.453979

Theta

117.176064

Tajima's D

-0.491011

CLR

0.121951

CSRT

0.244137793110344

Interpretation

Uncertain