Silkworm Genome Informatics Database

Gene

KWMTBOMO11928

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr20(-):3717484-3722962 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.188 Nuclear Reliability : 1.394

CDS

ATGGCGTTGGCGGAAGGGCCGGCGACTGCTGCGACGTCGCCCGCCACTGATTTAGAGACTCGTTCTTCTCGCGGACTGGCTGCTGCCTCTTCGGCGCAAGCCAGGGCCGCCCGCCGTGAGGCCAACGAACGTATAAAAAACGGAGAGGTTGAGCATCTGGAGCGCTCCCTTACCGAGGTGGGTCCTTCCGACCCCCTCCGAACATGTGACATCGCCCAGAAATTAGTGGCTGCGGTAGTTAAGAAATCGGCCAAGGGCCTAAAGGGCGACTGCGTGCGGGCCCTAAAATCGGCTACCTCTTCCCTGGAGGAGCAAATGGCGAATGCGGTAAGCCGCACCACCAACGATGAAACGGTGGGTCTACGGGAAACAGTGGACCTGCTGCACGCCCGACTGGCCCAAATGAGTGCCGAAAACGATCGCCTTCGGCAGGAGAACGGGCAGATGAAGGTCGACATGGCTGAGATGCGCACGCTCGTGAACGACTTAGTCGAGAAGCAGTGCAACTCGGCCCCTGCATCTGCTCCGCTCGAAACAGAAGAGGCCAATGAGGCCGAGGAGTTGAGGCGGCGGCTCCTAATACAGGAGGCACGCAGCTCCAACGTGGAGCGCGCGAGACCGCCCCTCGCTCACGAGAGAAAAGGAGAAGCCCCAACACCGGCACCCCGCAGGATCGTGAAGACGACCACCACCTCTAACGCGGTATCAAGGGCCACCAAAACATATGGCGGCCCCAAAACCAAAATGGGCGTAACTCCTGCGGCACGCCCCGCCGCGACTGCTGCTGCGAGGGCAACAATGTCCGCCCCTCCGAAGACAACGGCGTCTGCTCCTGCCCCGTCCCAGCCTGCGAAGGCGGGGCCTGGCAGGAGCCGGACTAAGAAGAAGAGGGGCATCAACGCCGCAAAACCGGCCCCGACCCCACAGCCCCGCCCACTGCCCCCTGCTCCGGCGAATATGGAAGAGGCCTGGACGACGGTAGTGCGGCGTGGGCCTAAGAAAGTGGCGGCGCCTGCTGCGCCGCGTCCCAAGCCCGCCCCTGCGGCCACCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCAAAAAGGAAGAGGAGGAGCACGCAGAAAGCCGCGCGCCCCGCGGTCGGCTGCAGTTGTATTGGAGCTGCTGCCGGCCGCCAAAGAAAAGGGCATCACGTACCACGACGTGATGACCCAGGCGCGCGGTGGCGTAAATGTGGACGCCCTCGGCGTGGAGGGTGGCGTCAAGGTCCGGCAGACGGCCAACGGGGCTCGTCTTTTGGAGTGCCCCGGCGAAAACACGAACGCCGCGGCCGAAAAATTGGCGGCCCGGCTTCGAGAAATTCTGCCGGACCCCGAGATGGTGCGCATAGCGCGGCCCGTGAAGATGGGTGAAGTCAAAATCACGGGCCTCGACGAGTGCGCCACGAAGGAGGAGGTCGCCGCGGCCATCGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGGGAACTCCGGGAAACATATTCAGGAACCCGGACGGCGTGGGCGCGTTGCCCCATTGCAACGGCGACCCTCCTGGCCACCCCTCCACAGGGGCGGCCTTCCGACAGCCCAGGAAGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAGCTGCAGGATGCCAGGCCGTGGCGCTGTCTTCGGTGCTTCGGCACCGGCCACGGTCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGGCTTGTGTTTCCGCTGCGGCCAACCGGGGCACAAGGCAGCCTCCTGCACCACAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGCCAAAAGGAAGGCCGACCACCGGGCCGGGGGCCCGGCGTGCAAATCCGCCCCCTCCTCAACCAAAACGAGGAGGGGCGGAAAGAAAAAGAAGCCGGCTGCAAAAAGGGCAGCCGGTGAGTCAGTTCCCGCCGCGGCACCAGACGAGCCGCAGGGCGGGACAGACGAGGGAGCGATGGACGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGACGTCGCTGTCGCCGCGGAGCCGTACTTCGTCCCCACCGACCAGGACTGCTGGATAGGGGACGTCGACGGCTCCGTGGCCATTGTGTTGAGACATTCCGCGGCGTTACCCCCCTTGGATATGGTGGCCAGGGGACCCGGGTACGTCGCGGCTAGGATCGACGGGACCGTCGTGATCGGGGCGTACTTTTCTCCGAACAGGAGCCTCGCCGAGTTCGAGCGGTTTCTGGGCGGGCTCGAGGCGCTTTTGCACCGCCTCGGGTCCCGCCCTGTCATCGTCGCGGGGGACTTCAATGCCAAGTGCACGGCTTGGGGTTCCCCCCGCACGGATGCGAGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGACCGGCCTCTGCCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGCAATCTCACGTGGACGTGACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGATACGTCCGATTCGAGCTCTCCGCCTCCTCCTTGTCGTCGTCGTCAGCCGCGGGCGCCCGCGGTGAGGAGGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCTAGGTGGGCCTTGAAACGAATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTCGCCCGAGATCGCGAGACTCCACGGCGGCCCGGCTGCACGCTGACTGTCGTCAAAAGCAGACGGCGCTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATAATTTCTGCGCTTTTCCCGCCGGCAGCGGGGGGGGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACGCCTCCGCGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAGAATGAGAGCGAAGGACGCGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGAGAGGGCCGCTCGACTATTGACGCAATTCTGCGCGTGCGGGCCCTCTCCGATGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGGGTCCGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATTCGGGGACCCCTCCCGGGCTGAGCGTAATTTGTTACGCTGACGACACGTTGGTCGTAGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACTAGGATCCGACGGTTGGGGCTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGTTATTTCACGGGCCGGGACGAGCGCCGCCTCTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACTGGTCTTCGGTACCTCGGCCTCGAACTGGACGGTCGGTGGAACTTCCGCGCTCACTTTGCGAAGTTGGGCCCTCGATTGATGGCGACGGCCGGCTCTTTGAGCCGGCTGCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGTGCGCCCGTATGGTGCCACGCCCTGACCCGCCAGAACGTCGCCGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGGAAGGGCGCCCCAGCGAAGGTGTAGTTCGAGCGCGGAGGCTCCACTCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGAACCGTCGAGGCGGTCCGCCCGGTTCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTGACGCAGATGTTGACCGGCCATGGGTGTTTTGGCCGGTACCTATTTAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACATACATTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATAGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG

Protein

MALAEGPATAATSPATDLETRSSRGLAAASSAQARAARREANERIKNGEVEHLERSLTEVGPSDPLRTCDIAQKLVAAVVKKSAKGLKGDCVRALKSATSSLEEQMANAVSRTTNDETVGLRETVDLLHARLAQMSAENDRLRQENGQMKVDMAEMRTLVNDLVEKQCNSAPASAPLETEEANEAEELRRRLLIQEARSSNVERARPPLAHERKGEAPTPAPRRIVKTTTTSNAVSRATKTYGGPKTKMGVTPAARPAATAAARATMSAPPKTTASAPAPSQPAKAGPGRSRTKKKRGINAAKPAPTPQPRPLPPAPANMEEAWTTVVRRGPKKVAAPAAPRPKPAPAATAPRQEGRAEPRGQKGRGGARRKPRAPRSAAVVLELLPAAKEKGITYHDVMTQARGGVNVDALGVEGGVKVRQTANGARLLECPGENTNAAAEKLAARLREILPDPEMVRIARPVKMGEVKITGLDECATKEEVAAAIASQGNCALADVKVGELRETYSGTRTAWARCPIATATLLATPPQGRPSDSPGRLRVGWVVAHVQLQDARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGGPACKSAPSSTKTRRGGKKKKPAAKRAAGESVPAAAPDEPQGGTDEGAMDDLLVHTMAEWSIDVAVAAEPYFVPTDQDCWIGDVDGSVAIVLRHSAALPPLDMVARGPGYVAARIDGTVVIGAYFSPNRSLAEFERFLGGLEALLHRLGSRPVIVAGDFNAKCTAWGSPRTDARGEALSEWAIATGLCLLNRGTVATCVRWNGQSHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSLSSSSAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPEHHVGVRSGGRPRSRDSTAARLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQPWALPVTERLQPRQLREIISALFPPAAGGDFEPPQMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSRMRAKDAAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGVRPGPPAVEHRLRLGPAGRHSGTPPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPLGAHLVIGGVRVGVGVTGLRYLGLELDGRWNFRAHFAKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRQNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Uniprot

A0A0J7KQK3 A0A0J7N0R3 A0A0J7KRB8 A0A0J7KFH2 A0A3S2LNH8 A0A0J7NFZ0 + More
A0A0J7KIS5 J9JWJ3 J9KWM9 J9LQQ1 J9K6F0 J9KNS1 A0A139WAH4

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01012412 KMQ86235.1 LBMM01003988 KMQ92922.1 + More
LBMM01008278 KMQ89009.1 RSAL01003504 RVE40273.1 LBMM01005474 KMQ91485.1 LBMM01006977 KMQ90149.1 ABLF02013358 ABLF02013361 ABLF02054869 ABLF02011927 ABLF02030663 ABLF02041312 ABLF02012448 ABLF02012450 ABLF02012455 ABLF02012460 ABLF02018808 KQ971388 KYB24913.1

Proteomes

UP000036403 UP000283053 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin
PF00075   RNase_H

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B
IPR012337   RNaseH-like_sf
IPR002156   RNaseH_domain
IPR036397   RNaseH_sf

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756
SSF53098   SSF53098

Gene 3D

3.60.10.10 3.40.390.10 3.30.420.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7N0R3 A0A0J7KRB8 A0A0J7KFH2 A0A3S2LNH8 A0A0J7NFZ0 + More
A0A0J7KIS5 J9JWJ3 J9KWM9 J9LQQ1 J9K6F0 J9KNS1 A0A139WAH4

PDB

1WDU E-value=6.24286e-10, Score=160

KEGG

105841899 no KO assigned | (RefSeq) uncharacterized LOC105841899

GO

GO:0008270 GO:0003676 GO:0003964 GO:0004523 GO:0046872 GO:0008138 GO:0004890 GO:0005216 GO:0043564 GO:0006418 GO:0003824

Length:

1689

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.17286

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1689

Pi

0

Theta

0

Tajima's D

0

CLR

0.040995

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree