SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11923
Pre Gene Modal
BGIBMGA004388
Annotation
Astryp1_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 2.37
 

Sequence

CDS
ATGAGGTTGCACATTAGATTGGTGAATGCGCCAGTCATTGACGCGTCGATCTGCGAAGAAGACGCCAGATTACTTCCCGGCCATTATATTTGCGTCGGAGGTGTTCAAGATCCAAACAGACATTTCTGCAGACAAGACAACGGCGGCGCTGTGATTCAAAACGATACTCTGATCGCGGTATCTTCGTTCTTACACACATGCGCAGTCTACACCAAAACCCACGCTTTTCCCAAAGTCTCTAGCTTCTCCAGATGGCTCGACTCTGTCATCTGGGACGAAGGAAACAGACCTACAACTACAGAGCCATCTACCACCACAGCGTCTACCACCAATACTTCTAACACCACCGAAATCTCCTCAACTACAAGTCAGTTCTTTGCTGAAGCAAACAAATTCATGCTCACTTTACCGTTTGATCCAATAAACGTACCTCTAGAACCAGCGGAAGATAACTCAGTGATACCCCACATGAGCCTGTATGAGTCGTATTTGCAAAATTTGGCCAAAGAGAAAACATCGACTACAACAGATCCAAGCGTGGAAGAACAAAAGAAGAAGTTGCTTCAGAAATACGGAAAAGCGTTAATGAAGATGCCAGCAGAACTTATGAAGAAGAAAATAGAACAATACGAATATAAATAG
Protein
MRLHIRLVNAPVIDASICEEDARLLPGHYICVGGVQDPNRHFCRQDNGGAVIQNDTLIAVSSFLHTCAVYTKTHAFPKVSSFSRWLDSVIWDEGNRPTTTEPSTTTASTTNTSNTTEISSTTSQFFAEANKFMLTLPFDPINVPLEPAEDNSVIPHMSLYESYLQNLAKEKTSTTTDPSVEEQKKKLLQKYGKALMKMPAELMKKKIEQYEYK

Summary

Pfam
PF00089   Trypsin
Interpro
IPR001254   Trypsin_dom        + More
IPR009003   Peptidase_S1_PA       
SUPFAM
SSF50494   SSF50494       
PDB
1QQU     E-value=6.05489e-05,     Score=107

Ontologies

Topology

Length:
213
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02504
Exp number, first 60 AAs:
0.01123
Total prob of N-in:
0.12303
outside
1  -  213
 
 

Population Genetic Test Statistics

Pi
354.794953
Theta
203.577948
Tajima's D
2.09111
CLR
0.76605
CSRT
0.895805209739513
Interpretation
Uncertain
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