Gene

KWMTBOMO11918

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr20(-):3582994-3584802      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.364

CDS

ATGCCTCCCCTCGTACGCCCTTCAGGCCAACCACCGGCATTCGATGACGATGACAAGGCTGAGCTGCTTGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCGATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCCGGCTCCGACGGCATCCACAACCGCGCGCTAAAACTCTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTTTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACATAAGCCGGGCAAACCGACAAACGAAACTTCTAGTTACCGTCCGATTAGTCTCCTCTCGACGATAGGAAAAATTTACGAACGGCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTCTCATAGACGAACAGTTCGGATTCCGCTCTAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATTCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTATAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAACTGACTGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCATGGGACAGTGGTTCCGGAAGTGGCGAATTGACATCAACCCCACGAAAAGCGCAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACATCACTTCGAGCATCCCACTCCGTAGTAGGCGCGCAAACACCTCCACCGTTAGTCCCATCACTCTCTTTGGCCAGCCCATACCGTGGGTCTCGAAGGTCAAATATCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCATATAAAAACGGTACGCGACCGCGCCGCGTTTATTCTAGGACGACTCTATCCAATGCTTTGTTGTCGAAGCAAGCTGTCCCTCCGTAATAAGGTAACTCTCTACAAAACTTGTATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGCTCACGCAGCCCGCACCAACTTGAAATCCCTTCAGGTTATTCAATCACGATTCTGCAGGATAGCCGTCGGAGCGCCTTGGTTCCTTAGGAATGTGGATCTCCACGACGACCTGGAGCTCGACTCTGTTAGTAAGTATCTACAGTCGGCATCGCTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGGTAAACCGTCGACGTCGCCCAAAGCACGTCATTACGGATCCTCCTGATCCATTAACGGTGCTTTTAGGCACCACAAGCACCGGTCACCGTCCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGCGAACTAA

Protein

MPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSTQHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSTVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCCRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSVSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDPPDPLTVLLGTTSTGHRPRRTRRLRRRARRAN

Uniprot

Q9XXW0   Q93137   Q9BPQ0   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A1Y1NA23   V5GNF3   A0A139WA11   A0A139W8G9   V5GNJ2   A0A2S2PR14   X1WMU5   J9KKL3   X1WWC4   A0A087U2S8   X1WLB2   X1WXU3   J9KC83   A0A2S2PX53   A0A224XF24   A0A023EZE6   A0A2S2QTZ8   A0A2S2PPK8   A0A2S2Q823   A0A2S2PH29   A0A2S2QJM7   A0A023EYS8   A0A1Y1M7E9   A0A2J7RIW7   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q059   A0A2J7Q4F7   A0A3N5Z7I3   A0A2J7QUJ9   A0A2J7RB54   A0A2S2QEE0   A0A2J7RPU2   A0A2J7PMP9   A0A023F6S4   A0A2S2Q383   A0A2J7RS77   A0A2S2NGV8   A0A2H8U0H5   A0A069DZC5   A0A069DW01   A0A2H8TWD9   A0A2J7Q0Q6   A0A2J7R8R8   A0A2J7R6U1   A0A2J7QFL0   A0A2J7R2E1   J9M522   A0A2A4K8E7   A0A2J7RKP3   Q07995   A0A2J7QEZ4   A0A2S2N814   A0A2J7PDM0   A0A2J7QPI2   A0A2J7Q5G9   A0A2J7R579   A0A2J7QR37   A0A2J7Q2R1   A0A2J7R4B1   A0A1Y1LKN6   A0A2J7Q1Y9   A0A2P8Z520   A0A0J7KBP6   A0A182GA28   A0A2J7QY69   J9LC15   A0A2J7PBY3   A0A0A9YJ00   A0A2J7PDS9   A0A0A9YU04   A0A0L0CBP5   A0A2J7Q6J2   A0A087T1W0   A0A2S2NJB5   A0A224X6U5   A0A2J7R7D0   A0A2J7PEB1   A0A2J7PU96   A0A2M4BD67   A0A0J7K4E0   A0A182GMD9   A0A2M4BDV6   A0A2M4BEF4   A0A2M4BEZ9   A0A224X6Q4   X1XGU0  

Pubmed

10333566    23652563    26354079    10380107    28004739    18362917    + More
19820115    25474469    30086797    26334808    8387152    29403074    26483478    25401762    26108605   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    AF081103    AAC72921.1    AF081101    AAC72919.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KK117880    KFM71667.1    ABLF02042518    ABLF02057746    ABLF02008933    ABLF02033757    GGMS01000737    MBY69940.1    GFTR01008038    JAW08388.1    GBBI01004571    JAC14141.1    GGMS01012005    MBY81208.1    GGMR01018716    MBY31335.1    GGMS01004685    MBY73888.1    GGMR01016114    MBY28733.1    GGMS01008766    MBY77969.1    GBBI01004395    JAC14317.1    GEZM01038405    JAV81653.1    NEVH01003017    PNF40781.1    NEVH01023962    PNF17612.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01020071    PNF21969.1    NEVH01018383    PNF23463.1    RPOV01000134    RPJ78669.1    NEVH01010546    PNF32261.1    NEVH01005938    PNF38077.1    GGMS01006359    MBY75562.1    NEVH01001355    PNF42855.1    NEVH01023961    PNF17613.1    GBBI01001646    JAC17066.1    GGMS01002992    MBY72195.1    NEVH01000280    PNF43672.1    GGMR01003407    MBY16026.1    GFXV01007093    MBW18898.1    GBGD01000880    JAC88009.1    GBGD01000799    JAC88090.1    GFXV01006424    MBW18229.1    NEVH01019964    PNF22161.1    NEVH01006721    PNF37225.1    NEVH01006754    PNF36554.1    NEVH01014858    PNF27387.1    NEVH01007838    PNF34986.1    ABLF02024246    NWSH01000032    PCG80497.1    NEVH01002716    PNF41415.1    S59870    AAB26437.2    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    GGMR01000676    MBY13295.1    NEVH01026386    PNF14434.1    NEVH01012089    PNF30491.1    NEVH01017559    PNF23833.1    NEVH01007393    PNF35987.1    NEVH01011985    PNF31054.1    NEVH01019080    PNF22876.1    NEVH01007578    PNF35646.1    GEZM01053022    JAV74219.1    NEVH01019376    PNF22596.1    PYGN01000192    PSN51582.1    LBMM01010106    KMQ87671.1    JXUM01155316    KQ572171    KXJ68070.1    NEVH01009134    PNF33528.1    ABLF02020655    ABLF02039168    ABLF02061060    NEVH01027074    PNF13841.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01026154    PNF14491.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    JRES01000644    KNC29657.1    NEVH01017470    PNF24199.1    KK113014    KFM59099.1    GGMR01004661    MBY17280.1    GFTR01008251    JAW08175.1    NEVH01006736    PNF36716.1    NEVH01026106    PNF14658.1    NEVH01021205    PNF19912.1    GGFJ01001858    MBW50999.1    LBMM01014395    KMQ85192.1    JXUM01014072    KQ560393    KXJ82651.1    GGFJ01001857    MBW50998.1    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    GFTR01008279    JAW08147.1    ABLF02055645   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000218220    + More
UP000245037    UP000036403    UP000069940    UP000249989    UP000037069   

PRIDE

Q9XXW0    Q93137    Q9BPQ0    K9N5J5   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A1Y1NA23   V5GNF3   A0A139WA11   A0A139W8G9   V5GNJ2   A0A2S2PR14   X1WMU5   J9KKL3   X1WWC4   A0A087U2S8   X1WLB2   X1WXU3   J9KC83   A0A2S2PX53   A0A224XF24   A0A023EZE6   A0A2S2QTZ8   A0A2S2PPK8   A0A2S2Q823   A0A2S2PH29   A0A2S2QJM7   A0A023EYS8   A0A1Y1M7E9   A0A2J7RIW7   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q059   A0A2J7Q4F7   A0A3N5Z7I3   A0A2J7QUJ9   A0A2J7RB54   A0A2S2QEE0   A0A2J7RPU2   A0A2J7PMP9   A0A023F6S4   A0A2S2Q383   A0A2J7RS77   A0A2S2NGV8   A0A2H8U0H5   A0A069DZC5   A0A069DW01   A0A2H8TWD9   A0A2J7Q0Q6   A0A2J7R8R8   A0A2J7R6U1   A0A2J7QFL0   A0A2J7R2E1   J9M522   A0A2A4K8E7   A0A2J7RKP3   Q07995   A0A2J7QEZ4   A0A2S2N814   A0A2J7PDM0   A0A2J7QPI2   A0A2J7Q5G9   A0A2J7R579   A0A2J7QR37   A0A2J7Q2R1   A0A2J7R4B1   A0A1Y1LKN6   A0A2J7Q1Y9   A0A2P8Z520   A0A0J7KBP6   A0A182GA28   A0A2J7QY69   J9LC15   A0A2J7PBY3   A0A0A9YJ00   A0A2J7PDS9   A0A0A9YU04   A0A0L0CBP5   A0A2J7Q6J2   A0A087T1W0   A0A2S2NJB5   A0A224X6U5   A0A2J7R7D0   A0A2J7PEB1   A0A2J7PU96   A0A2M4BD67   A0A0J7K4E0   A0A182GMD9   A0A2M4BDV6   A0A2M4BEF4   A0A2M4BEZ9   A0A224X6Q4   X1XGU0  

PDB

6AR3     E-value=0.000299085,     Score=106

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

579

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.21242

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03066

outside

1  -  579

 

 

Pi

40.564091

Theta

47.665191

Tajima's D

0.283447

CLR

0.176844

CSRT

0.454927253637318

Interpretation

Uncertain