Gene

KWMTBOMO11910

Pre Gene Modal

BGIBMGA004459

Annotation

PREDICTED:_intraflagellar_transport_protein_52_homolog_[Bombyx_mori]

Location

Bomo_Chr20(+):3330183-3348354      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.819 Nuclear   Reliability : 1.149

CDS

ATGAAGAGTGTAGTCGAAAGAGGCGATTCGGTGCTGGTCACAATGTCAGACGGCGGAGAGGAGAAGATAAATACGAACATCAACTTCTTCCTAGAAGAATTCGGAATAGTCGTCAATAATGATTGCGTTGTCCGAGCCAAGTTCCATAAATATTACCACCCTAAAGAATGTCACATCTCGAATGGAATCCTGAACAGGGCCGTCGCCGCACACATTATGAAGACGCCGAACTATGCGTGCGAGTCCGATGATTTTCTCGAGGATCCATCGACTCCGAATTTTGTTTATCCCTACGGCGCGACTCTGACCGTGAAGAAGCCCGCCGTGGCAGTCCTCTCGAGCAGCGACGTCTGCTATCCGGTCAAAAGACCTGTGGCCGCCTTGTATACGTCAGAAAAGACGGGAGGAAAACTGTTCGTTATCGGCTCCGGTCATTTCTTTGCTGACCAATACTTGGAGTCGGAGTGCAACGACCTCATCAGGGACTTGGTGTTCGGCTACCTGACCGGAACAGTTGCTCTACATTTGAACCCCGTCGACGCTGAGGATCCTGATATAAACGAGTACCGGACAGTAGGGGACGTTTGCTGGCTTAGCTCCAGGCCGCTGCCGGAGCCCGCCGCGCCCCCTCCCCTCCGAGCGCCCCCACACCCACACGCTCTCTTCACTTGGACACTCTTTTCCCTCAACTTGGCGCATCTACCAGAAGTACTAGGACTGTATGAAGCGTTAGGAGTCAAACACGAAGCGCTGAAGCTGATCGCGCCCCAGTTCGAAACCCCGTTCCCGCCGCTGCAACTTGCCGTGTTTCCGCCCACGTTCAGGGAGCCCCCTCCGCCGCCGCTGGAGTTGTTCGATCTGGACGAGGCGTTCAGCTCCGAGCGCTCGCAGCTGGCGAGGCTCGCCAATAAGTGTCTGCAACCGACCTCCAGCAGGATGGGTCAGGGAGACGGGAGTCAGTTGGAGAATGAACTGGAGTACTTCGTGCGCGAGTGTGGTCGCGCGGTGCGGCTGACGCGCGCTCAGCCTCCCGAGGAGGGACCCACCGCCAAGCACATATTGCACCAGCTCGCTCTCCAACTCGCTACCTTCAAGAAGATCTCGCCGAAAGACTAA

Protein

MKSVVERGDSVLVTMSDGGEEKINTNINFFLEEFGIVVNNDCVVRAKFHKYYHPKECHISNGILNRAVAAHIMKTPNYACESDDFLEDPSTPNFVYPYGATLTVKKPAVAVLSSSDVCYPVKRPVAALYTSEKTGGKLFVIGSGHFFADQYLESECNDLIRDLVFGYLTGTVALHLNPVDAEDPDINEYRTVGDVCWLSSRPLPEPAAPPPLRAPPHPHALFTWTLFSLNLAHLPEVLGLYEALGVKHEALKLIAPQFETPFPPLQLAVFPPTFREPPPPPLELFDLDEAFSSERSQLARLANKCLQPTSSRMGQGDGSQLENELEYFVRECGRAVRLTRAQPPEEGPTAKHILHQLALQLATFKKISPKD

Uniprot

A0A2W1BKF7   A0A2H1W0D6   A0A0N1IPV5   A0A194Q586   A0A212FDM4   A0A2A4K7N6   + More
A0A2J7PSC1   A0A067R9C6   T1JK26   S4RAS9   A0A151NZ97   A0A1U7S5N3   A0A099ZAE6   A0A1B6C3P4   A0A2D4I648   A0A2D4I635   A0A0B8RRD2   K7GDG7   A0A2C9JHN6   A0A2C9JHN7   A0A091SSA5   A0A094MWN6   A0A1S3J2K6   I3MEW9   A0A2Y9D9G8   G3SYM9   A0A2Y9DAC1   L8HP62   Q32KR5   A0A093NEW3   A0A091V2X4   A0A087QUU7   A0A091GZI7   A0A2U3V274   V9KLA6   A0A340XZT9   A0A341BLH4   A0A2Y9PXI4   A0A2K6FAU4   A0A2I0M244   A0A212CAM9   A0A2U3X4H8   A0A2Y9FJI9   A0A2Y9FHR3   G3VQU5   H9G693   A0A2Y9GZF8   A0A1B6E9N3   A0A091HRZ2   A0A3Q7PCH7   A0A2D0PL80   F6TR27   A0A1D5PJB0   L5LVV4   A0A384CN95   A0A3Q7X9T0   A0A3Q0GN31   S7N401   A0A2D0PIR7   M3WEJ7   G1MVN2   F7FWQ0   A0A1S3AHW0   A0A384CNA7   A0A3Q7VDZ2   Q6J503   A0A093INZ1   D2H6K3   A8DZG0   A0A1V4KL30   Q5PRA7   A0A1S3EP80   U3JT73   A0A093BTQ0   A0A226N680   A0A093HK99   A0A091JKD6   G1LAV5   A0A093PLW1   A0A3Q0E0S0   A0A0Q3T320   K9ITL4   A0A1U7TU14   G9K5A9   A0A341BLG9   A0A340Y019   E2RGJ4   A0A384B0J2   M3Z1W4   A0A099ZZ00   A0A341BIL2   A0A3Q7SGY2   A0A091S9L5   A0A091N1F5   A0A2U3X4I0   A0A2Y9IVT9   U6CPG6   A0A091ETP4   A0A3P4LTU5  

Pubmed

28756777    26354079    22118469    24845553    22293439    25476704    + More
17381049    15562597    22751099    19393038    24402279    23371554    21709235    21881562    19892987    15592404    24813606    17975172    20838655    17495919    15182712    20010809    23594743    23236062    16341006   

EMBL

KZ150066    PZC74134.1    ODYU01005575    SOQ46559.1    KQ460009    KPJ18460.1    + More
KQ459460    KPJ00703.1    AGBW02009026    OWR51834.1    NWSH01000046    PCG80241.1    NEVH01021933    PNF19237.1    KK852611    KDR20281.1    JH432107    AKHW03001485    KYO42216.1    KL890412    KGL77815.1    GEDC01029185    JAS08113.1    IACK01081405    LAA79680.1    IACK01081403    LAA79676.1    GBSH01001381    JAG67645.1    AGCU01110378    AGCU01110379    AGCU01110380    KK484631    KFQ61592.1    KL259441    KFZ58896.1    AGTP01046795    AGTP01046796    AGTP01046797    JH883661    ELR46095.1    BC109960    AAI09961.1    KL224760    KFW63433.1    KL410577    KFQ97337.1    KL225929    KFM05001.1    KL448044    KFO79512.1    JW866455    AFO98972.1    AKCR02000047    PKK23749.1    MKHE01000023    OWK03039.1    AEFK01018979    AEFK01018980    AEFK01018981    AAWZ02026165    GEDC01028012    GEDC01002665    JAS09286.1    JAS34633.1    KL217718    KFO97919.1    AADN05000479    KB107231    ELK30226.1    KE163078    EPQ10780.1    AANG04003379    AY600455    AAT27468.1    KL216214    KFV68406.1    GL192531    EFB21139.1    AL935272    LSYS01002950    OPJ85139.1    BC086737    BC165572    AAH86737.1    AAI65572.1    AGTO01011053    KL228801    KFV04254.1    MCFN01000182    OXB63096.1    KL206162    KFV79387.1    KK502179    KFP21434.1    ACTA01188221    ACTA01196219    KL670017    KFW77828.1    LMAW01002980    KQK74958.1    GABZ01001698    JAA51827.1    JP011486    AES00084.1    AAEX03013950    AEYP01020342    AEYP01020343    AEYP01020344    AEYP01020345    AEYP01020346    KL869906    KGL86378.1    KK946563    KFQ54838.1    KK840021    KFP82689.1    HAAF01000629    CCP72455.1    KK718902    KFO59654.1    CYRY02002470    VCW67164.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000218220    UP000235965    UP000027135    + More
UP000245300    UP000050525    UP000189705    UP000053641    UP000007267    UP000076420    UP000085678    UP000005215    UP000248480    UP000007646    UP000009136    UP000054081    UP000053283    UP000053286    UP000053760    UP000245320    UP000265300    UP000252040    UP000248483    UP000233160    UP000053872    UP000245340    UP000248484    UP000007648    UP000001646    UP000248481    UP000054308    UP000286641    UP000221080    UP000002281    UP000000539    UP000261680    UP000291021    UP000286642    UP000011712    UP000001645    UP000002280    UP000079721    UP000053875    UP000000437    UP000190648    UP000081671    UP000016665    UP000198323    UP000053584    UP000053119    UP000008912    UP000053258    UP000189704    UP000051836    UP000002254    UP000261681    UP000000715    UP000053858    UP000286640    UP000248482    UP000052976   

Pfam

PF09822   ABC_transp_aux

Interpro

IPR039975   IFT52        + More
IPR019196   ABC_transp_unknown       
IPR029062   Class_I_gatase-like       

SUPFAM

SSF52317   SSF52317       

ProteinModelPortal

A0A2W1BKF7   A0A2H1W0D6   A0A0N1IPV5   A0A194Q586   A0A212FDM4   A0A2A4K7N6   + More
A0A2J7PSC1   A0A067R9C6   T1JK26   S4RAS9   A0A151NZ97   A0A1U7S5N3   A0A099ZAE6   A0A1B6C3P4   A0A2D4I648   A0A2D4I635   A0A0B8RRD2   K7GDG7   A0A2C9JHN6   A0A2C9JHN7   A0A091SSA5   A0A094MWN6   A0A1S3J2K6   I3MEW9   A0A2Y9D9G8   G3SYM9   A0A2Y9DAC1   L8HP62   Q32KR5   A0A093NEW3   A0A091V2X4   A0A087QUU7   A0A091GZI7   A0A2U3V274   V9KLA6   A0A340XZT9   A0A341BLH4   A0A2Y9PXI4   A0A2K6FAU4   A0A2I0M244   A0A212CAM9   A0A2U3X4H8   A0A2Y9FJI9   A0A2Y9FHR3   G3VQU5   H9G693   A0A2Y9GZF8   A0A1B6E9N3   A0A091HRZ2   A0A3Q7PCH7   A0A2D0PL80   F6TR27   A0A1D5PJB0   L5LVV4   A0A384CN95   A0A3Q7X9T0   A0A3Q0GN31   S7N401   A0A2D0PIR7   M3WEJ7   G1MVN2   F7FWQ0   A0A1S3AHW0   A0A384CNA7   A0A3Q7VDZ2   Q6J503   A0A093INZ1   D2H6K3   A8DZG0   A0A1V4KL30   Q5PRA7   A0A1S3EP80   U3JT73   A0A093BTQ0   A0A226N680   A0A093HK99   A0A091JKD6   G1LAV5   A0A093PLW1   A0A3Q0E0S0   A0A0Q3T320   K9ITL4   A0A1U7TU14   G9K5A9   A0A341BLG9   A0A340Y019   E2RGJ4   A0A384B0J2   M3Z1W4   A0A099ZZ00   A0A341BIL2   A0A3Q7SGY2   A0A091S9L5   A0A091N1F5   A0A2U3X4I0   A0A2Y9IVT9   U6CPG6   A0A091ETP4   A0A3P4LTU5  

PDB

5FMS     E-value=4.02631e-50,     Score=500

KEGG

101747159    K19681 intraflagellar transport protein 52 | (RefSeq) intraflagellar transport protein 52 homolog

GO

GO:0060271   GO:0031514   GO:0005930   GO:0042073   GO:0036064   GO:0005813   GO:0007224   GO:1905515   GO:0035720   GO:0050680   GO:0097542   GO:0030992   GO:0009953   GO:0042733   GO:0070613   GO:0097546   GO:0044292   GO:0005814   GO:0001841   GO:0032391   GO:0001947   GO:0005929  

PANTHER

PTHR12969  

Length:

371

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02195

Exp number, first 60 AAs:

0.0004

Total prob of N-in:

0.01940

outside

1  -  371

 

 

Pi

166.786084

Theta

40.548174

Tajima's D

1.024129

CLR

0.394885

CSRT

0.672716364181791

Interpretation

Uncertain