Gene

KWMTBOMO11906  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004396

Annotation

PREDICTED:_low_molecular_30_kDa_lipoprotein_PBMHPC-19_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr20(-):3299393-3301052      View in EpiBrowser

Full name

Low molecular mass 30 kDa lipoprotein 19G1       + More
Low molecular 30 kDa lipoprotein PBMHPC-19      
Microvitellogenin      
Low molecular mass 30 kDa lipoprotein 21G1      
Low molecular 30 kDa lipoprotein PBMHPC-23      
Low molecular 30 kDa lipoprotein PBMHP-12      
Low molecular 30 kDa lipoprotein PBMHP-6      
Low molecular 30 kDa lipoprotein PBMHPC-21      

Location in the cell

Extracellular   Reliability : 3.94

CDS

ATGAAGCCCGCTATAGTTATTCTATGTCTTTTCGTGGCATCTCTGTATGCTGCAGATTCCGACGTCCCTAACGACATTCTGGAGGAGCAGCTTTACAATAGCGTCGTCGTCGCCGATTACGACAGTGCGGTTGAAAAGAGCAAGCATTTATACGAGGAGAAGAAGAGCGAAGTCATCACAAATGTCGTGAACAAACTGATACGAAACAACAAGATGAACTGCATGGAGTACGCCTATCAACTTTGGCTCCAGGGCTCCAAGGACATCGTCCGGGATTGTTTCCCAGTTGAGTTCAGACTTATCTTCGCCGAAAACGCGATTAAGCTTATGTACAAGCGCGACGGTCTCGCTTTGACGCTGAGCAATGATGTTCAAGGCGACGATGGCAGACCTGCCTACGGCGACGGCAAGGACAAGACAAGCCCGAGAGTCAGCTGGAAGTTAATCGCTCTGTGGGAGAACAACAAGGTCTACTTCAAGATCTTGAACACTGAACGTAACCAATACTTGGTATTGGGAGTCGGCACTAACTGGAACGGCGACCATATGGCCTTCGGAGTCAACAGCGTCGATAGTTTCAGAGCCCAGTGGTACCTGCAGCCTGCTAAGTACGACAATGACGTCTTGTTCTACATCTACAACCGTGAATACAGCAAGGCTTTGACACTGTCGAGGACGGTTGAGCCCTCGGGTCACCGCATGGCCTGGGGATACAACGGCAGAGTAATCGGAAGTCCCGAACATTACGCTTGGGGTATAAAGGCTTTCTAA

Protein

MKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIYNREYSKALTLSRTVEPSGHRMAWGYNGRVIGSPEHYAWGIKAF

Miscellaneous

This lipoprotein belongs to the group of structurally related '30 kDa proteins' that comprise major protein components of the fifth (and last) instar larvae and of pupae.
Biosynthesis occurs in a stage-dependent fashion in the fat body.

Similarity

Belongs to the 30 kDa lipoprotein family.

Keywords

3D-structure   Complete proteome   Lipoprotein   Reference proteome   Signal   Secreted  

Feature

chain  Low molecular mass 30 kDa lipoprotein 19G1

Uniprot

H9J4F6   Q00802   C7A8A3   P09336   E5EVW2   D4QGB9   + More
Q6Q0S8   D4QGC0   H9B436   H9B437   H9J4G1   H9J4G0   H9B450   H9J4L5   H9J4G4   P19616   Q0VJU3   A0A0B5Z504   Q00801   H9J4F5   H9J4M8   A7LIK7   H9B440   H9J4F9   P09338   H9B444   P09335   H9J4L6   Q05432   H9J4G3   H9B458   H9J4M4   H9B443   P09334   Q17185   C7A8A2   H9J4M5   H9J4M3   H9J4M7   Q75RW3   H9J4L7   H9B454   H9B445   Q2PQU4   P09337   H9B447   H9JJC0   H9J4L1   H9J4G5   H9B449   H9JMX4   H9B448   H9J4G2   H9B451   H9B460   E5EVW3   B5BSX5   H9JF68   A0A194QYV5   H9J4N3   A0A2W1BPF5   H9J4N4   A0A194Q636   A0A2A4IYY5   H9B453   H9J4E8   H9B455   H9JX32   H9J4E6   H9J4N1   H9JJ72   Q76IB6   H9J4N5   H9JL03   H9B457   A0A2H1WST8   A0A385HW64   A0A3G1LBE0   A0A2W1BV38   A0A3G1LBD4   H9JXA6   A0A2W1BZD4   H9JX33   H9J4N6   H9B459   H9J4E7   A0A2A4K904   A0A2A4JTT3   H9JVX1  

Pubmed

19121390    26078299    1883839    3342240    21457781    21514389    + More
22948915    2583514    2454229    26126120    25379889    1343778    2002509    17112968    18840462    26354079    28756777    12871935    29175381   

EMBL

BABH01021937    JN977519    AFC87799.1    X54736    FJ214661    ACO35751.1    + More
X07554    BABH01021936    HM012806    JN977520    ADQ89805.1    AFC87800.1    AB553283    BAJ04787.1    AY568957    AAS75435.1    AB553284    BAJ04788.1    JN977521    AFC87801.1    JN977522    AFC87802.1    BABH01021930    BABH01021931    BABH01021932    BABH01021933    BABH01021934    JN977535    AFC87815.1    BABH01021929    BABH01021925    JN977523    AFC87803.1    M28820    J03768    AM293331    CAL25136.1    KM926620    AJI02615.1    X54734    BABH01021941    JN977524    AFC87804.1    BABH01022000    EU024295    ABS71120.1    JN977525    AFC87805.1    BABH01021935    X07556    JN977529    AFC87809.1    X07553    D12523    BAA02093.1    JN977543    AFC87823.1    BABH01021994    JN977526    AFC87806.1    JN977528    AFC87808.1    X07552    X54735    CAA38532.1    FJ214660    ACO35750.1    BABH01021998    JN977527    AFC87807.1    BABH01021988    BABH01021999    AB158646    BAD07027.1    JN977539    AFC87819.1    BABH01028979    JN977530    AFC87810.1    BABH01011413    DQ306881    JN977531    ABC18268.1    AFC87811.1    X07555    BABH01026781    JN977532    AFC87812.1    BABH01036437    JN977541    AFC87821.1    BABH01021908    BABH01021921    JN977534    AFC87814.1    BABH01028980    JN977533    AFC87813.1    JN977536    AFC87816.1    JN977545    AFC87825.1    HM012807    ADQ89806.1    AB436163    BAG70410.1    BABH01026782    JN977537    AFC87817.1    KQ460930    KPJ10718.1    BABH01022003    KZ149940    PZC76929.1    BABH01022005    KQ459582    KPI98870.1    NWSH01005147    PCG64400.1    JN977538    AFC87818.1    BABH01022004    JN977540    AFC87820.1    BABH01043627    BABH01022007    AB098260    BAC82630.1    BABH01022013    JN977542    AFC87822.1    ODYU01010790    SOQ56108.1    MG799571    AXY55009.1    MF497270    AUB45122.1    KZ149893    PZC78918.1    MF497269    AUB45121.1    BABH01035696    PZC78944.1    BABH01043629    BABH01022014    JN977544    AFC87824.1    BABH01022006    NWSH01000017    PCG80765.1    NWSH01000685    PCG74802.1    BABH01040631   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220   

PRIDE

H9J4F6    Q00802    C7A8A3    P09336    E5EVW2    D4QGB9    + More
Q6Q0S8    D4QGC0    H9B436    H9B437    H9J4G1    H9J4G0    H9B450    H9J4L5    H9J4G4    Q00801    H9J4F5    H9J4M8    A7LIK7    H9B440    H9J4F9    P09338    H9B444    P09335    H9J4L6    Q05432    H9J4G3    H9B458    H9J4M4    P09334    Q17185    C7A8A2    H9J4M5    H9J4M3    H9J4M7    Q75RW3    H9J4L7    H9B454    H9B445    Q2PQU4    P09337    H9B447    H9JJC0    H9J4L1    H9J4G5    H9B449    H9JMX4    H9B448    H9J4G2    H9B451    H9B460    E5EVW3    B5BSX5    H9JF68    H9J4N3    H9J4N4    H9B453    H9J4E8    H9B455    H9JX32    H9J4E6    H9J4N1    H9JJ72    H9J4N5    H9JL03    H9B457    H9JXA6    H9JX33    H9J4N6    H9B459    H9J4E7   

Pfam

PF03260   Lipoprotein_11

Interpro

IPR042046   Lipoprotein_11_N        + More
IPR004943   Lipoprotein_11       
IPR035992   Ricin_B-like_lectins       

SUPFAM

SSF50370   SSF50370       

Gene 3D

1.10.10.2400    

ProteinModelPortal

H9J4F6   Q00802   C7A8A3   P09336   E5EVW2   D4QGB9   + More
Q6Q0S8   D4QGC0   H9B436   H9B437   H9J4G1   H9J4G0   H9B450   H9J4L5   H9J4G4   P19616   Q0VJU3   A0A0B5Z504   Q00801   H9J4F5   H9J4M8   A7LIK7   H9B440   H9J4F9   P09338   H9B444   P09335   H9J4L6   Q05432   H9J4G3   H9B458   H9J4M4   H9B443   P09334   Q17185   C7A8A2   H9J4M5   H9J4M3   H9J4M7   Q75RW3   H9J4L7   H9B454   H9B445   Q2PQU4   P09337   H9B447   H9JJC0   H9J4L1   H9J4G5   H9B449   H9JMX4   H9B448   H9J4G2   H9B451   H9B460   E5EVW3   B5BSX5   H9JF68   A0A194QYV5   H9J4N3   A0A2W1BPF5   H9J4N4   A0A194Q636   A0A2A4IYY5   H9B453   H9J4E8   H9B455   H9JX32   H9J4E6   H9J4N1   H9JJ72   Q76IB6   H9J4N5   H9JL03   H9B457   A0A2H1WST8   A0A385HW64   A0A3G1LBE0   A0A2W1BV38   A0A3G1LBD4   H9JXA6   A0A2W1BZD4   H9JX33   H9J4N6   H9B459   H9J4E7   A0A2A4K904   A0A2A4JTT3   H9JVX1  

PDB

4IY9     E-value=1.10416e-137,     Score=1253

KEGG

693044    no KO assigned | (RefSeq) Lp-c19, 19G, 19G1, 19G1Q, C-19, Lp; low molecular lipoprotein 30K pBmHPC-1

GO

GO:0005576   GO:0005615   GO:0016021   GO:0016020   GO:0016780   GO:0006470   GO:0008138   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

Subcellular location

  

SignalP

Position:   1 - 17,         Likelihood:  0.998309

 

 

Length:

256

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11181

Exp number, first 60 AAs:

0.10992

Total prob of N-in:

0.02240

outside

1  -  256

 

 

Pi

151.053719

Theta

139.270457

Tajima's D

0.169859

CLR

65.822996

CSRT

0.414829258537073

Interpretation

Uncertain