SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11904  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004397
Annotation
low_molecular_mass_30_kDa_lipoprotein_19G1-like_precursor_[Bombyx_mori]
Full name
Low molecular mass 30 kDa lipoprotein 19G1       + More
Low molecular 30 kDa lipoprotein PBMHPC-19      
Microvitellogenin      
Low molecular mass 30 kDa lipoprotein 21G1      
Low molecular 30 kDa lipoprotein PBMHP-12      
Low molecular 30 kDa lipoprotein PBMHPC-23      
Low molecular 30 kDa lipoprotein PBMHP-6      
Low molecular 30 kDa lipoprotein PBMHPC-21      
Location in the cell
Extracellular   Reliability : 3.335
 

Sequence

CDS
ATGAAGCCCGTCATAGTTATTCTATGTCTTTTCGTGGCATCTCTGTATGCTGCAGATTCCGACGTCCCTAACGACATTCTGGAGGAGCAGCTTTACAATAGCATCGTCGTTGCCGATTACGACAGTGCGGTTGAAAAGAGCAAGCATTTATACGAGGAGAAGAAGAGCGAAGTCATCACAAATGTAGTGAACAAACTGATACGAAACAACAAGATGAACTGCATGGAGTACGCCTATCAACTTTGGCTCCAGGGCTCCAAGGACATCGTCCGTGATTGTTTCCCAGTTGAGTTCAGACTTATCTTCGCCGAAAACGCCATTAAGCTTATGTACAAGCGCGACGGTCTCGCTTTGACGCTGAGTAATGATGTTCACGGCAACGATGGCAGACTTGCCTTCGGCGACGGTAAGGACAAAACAAGCCCGAAAGTCAGCTGGAAGTTCATTGCTCTGTGGGAGAACAACAAGGTCTACTTCAAGATCTTGAACACTGAGCGTAACCAATATTTGGTATTGGGAGTCGGTACTAACCCGAACGGCGACCACATGGCCTTCGGAGTCAACAGCGTCGATAGTTTCAGAGCCCAGTGGTACCTGCAGCCCGCTAAATACGACAAAGACAATTTGTTCTACATCTACAACCGTGAATACAGCAAGGCTTTGACACTGTCTAGGACGCTTGAAACCTCGGGTAACCGCATGGCCTGGGGATACAATGGTAGAGTGATCGGAAGTCCCGAACATTACGCTTGGGGTGTTAAGGCATTTTAA
Protein
MKPVIVILCLFVASLYAADSDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIYNREYSKALTLSRTLETSGNRMAWGYNGRVIGSPEHYAWGVKAF

Summary

Miscellaneous
This lipoprotein belongs to the group of structurally related '30 kDa proteins' that comprise major protein components of the fifth (and last) instar larvae and of pupae.
Biosynthesis occurs in a stage-dependent fashion in the fat body.
Similarity
Belongs to the 30 kDa lipoprotein family.
Keywords
3D-structure   Complete proteome   Lipoprotein   Reference proteome   Signal   Secreted  
Feature
chain  Low molecular mass 30 kDa lipoprotein 19G1
EMBL
BABH01021936    HM012806    JN977520    ADQ89805.1    AFC87800.1    BABH01021937    + More
JN977519    AFC87799.1    FJ214661    ACO35751.1    X54736    AB553284    BAJ04788.1    X07554    AB553283    BAJ04787.1    AY568957    AAS75435.1    JN977521    AFC87801.1    JN977522    AFC87802.1    BABH01021933    BABH01021934    BABH01021930    BABH01021931    BABH01021932    JN977535    AFC87815.1    BABH01021929    BABH01021925    JN977523    AFC87803.1    AM293331    CAL25136.1    M28820    J03768    KM926620    AJI02615.1    X54734    BABH01021941    JN977524    AFC87804.1    BABH01022000    EU024295    ABS71120.1    JN977525    AFC87805.1    BABH01021935    JN977529    AFC87809.1    X07553    X07556    JN977543    AFC87823.1    JN977528    AFC87808.1    X07552    X54735    CAA38532.1    FJ214660    ACO35750.1    D12523    BAA02093.1    BABH01021994    JN977526    AFC87806.1    BABH01021988    BABH01021998    JN977527    AFC87807.1    BABH01021999    AB158646    BAD07027.1    JN977539    AFC87819.1    BABH01028979    JN977530    AFC87810.1    BABH01011413    DQ306881    JN977531    ABC18268.1    AFC87811.1    BABH01026781    JN977532    AFC87812.1    BABH01021908    X07555    BABH01036437    JN977541    AFC87821.1    JN977534    AFC87814.1    BABH01028980    JN977545    AFC87825.1    BABH01021921    AB436163    BAG70410.1    JN977536    AFC87816.1    BABH01026782    JN977537    AFC87817.1    JN977533    AFC87813.1    HM012807    ADQ89806.1    KZ149940    PZC76929.1    KQ460930    KPJ10718.1    NWSH01005147    PCG64400.1    KQ459582    KPI98870.1    BABH01022003    JN977538    AFC87818.1    JN977540    AFC87820.1    BABH01022004    BABH01022005    BABH01022007    BABH01043627    AB098260    BAC82630.1    JN977542    AFC87822.1    BABH01022013    MG799571    AXY55009.1    MF497270    AUB45122.1    ODYU01010790    SOQ56108.1    KZ149893    PZC78918.1    MF497269    AUB45121.1    PZC78944.1    BABH01043629    BABH01035696    BABH01022014    BABH01022006    JN977544    AFC87824.1    NWSH01000017    PCG80765.1    NWSH01000685    PCG74802.1    BABH01040631   
Pfam
PF03260   Lipoprotein_11
Interpro
IPR042046   Lipoprotein_11_N        + More
IPR004943   Lipoprotein_11       
IPR035992   Ricin_B-like_lectins       
SUPFAM
SSF50370   SSF50370       
Gene 3D
PDB
3PUB     E-value=8.74115e-138,     Score=1254

Ontologies

Topology

Subcellular location
  
SignalP
Position:   1 - 17,         Likelihood:  0.998266
 
 
Length:
256
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.13602
Exp number, first 60 AAs:
0.13523
Total prob of N-in:
0.02160
outside
1  -  256
 
 

Population Genetic Test Statistics

Pi
212.090026
Theta
176.878322
Tajima's D
0.559875
CLR
0
CSRT
0.529423528823559
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
20822545 YDKDNLFYIYNR 100.00 4e-06
20822545 FIALWENNKVYFK 100.00 4e-06
20822545 YDKDNLFYIYNR 100.00 4e-06
20822545 FIALWENNKVYFK 100.00 4e-06
23174119 -.DIVRDCFPVEFR.- 100.00 7e-06
26280517 VGFFAER 100.00 2e-05
25044914 VIGSPEHYAWGVK 100.00 2e-05
24402669 VIGSPEHYAWGVK 100.00 2e-05
26822097 YDKDNIFYIYNR 100.00 7e-04
25860555 TANIFR 100.00 7e-04
26280517 DGIIIAAVDININR 100.00 7e-04
25044914 VIGSEIVQK 100.00 7e-04
24093152 VIGSPEHYAWGIK 100.00 7e-04
24402669 VIGSPEHYAWGIK 100.00 7e-04
27102218 SEVITNVVNK 100.00 7e-04
28467696 VIGSPEHYAWGIK 100.00 7e-04
29197581 TIETSGNR 100.00 7e-04
20822545 DIVRDCFPVEFR 100.00 0.002
20822545 MAWGYNGR 100.00 0.002
20822545 SEVITNVVNKLIR 100.00 0.002
20822545 AQWYLQPAK 100.00 0.002
23174119 -.LIFAENAIK.- 100.00 0.002
23174119 -.AQWYLQPAK.- 100.00 0.002
25860555 EVIMSEIESEKQNVNFITADGGR 100.00 0.002
26280517 DIVEAYER 100.00 0.002
24402669 DIVPDESTGGDDQEFERNEASNVIISEVSDATGK 100.00 0.002
28467696 DIVQYIADKEDIYE 100.00 0.002
29197581 DCFPVEFR 100.00 0.002
20822545 YDKDNLFYIYNR 100.00 0.009
20822545 YDKDNLFYIYNR 100.00 0.009
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