Silkworm Genome Informatics Database

Gene

KWMTBOMO11887

Pre Gene Modal

BGIBMGA004449

Annotation

Uncharacterized_protein_OBRU01_16370_[Operophtera_brumata]

Location

Bomo_Chr20(+):2980703-2981469 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.513

CDS

ATGTCCGAATCTCATCTAATTTGTCCTCCGTATAATTACTTGAGAGATGCAAAAATTTACAACAAAAAAGACGAAATCGTACCCTGGCACTGGATCGAGGAGAACGCCGATATTCTCGTCCTCCTATTCACCGCTAAGGGGATAGATAAAGATGGAATTATAGAAAATTTCTATAAGATTTACGAGAACGTGAAACACCGTAATTTCCCTTTAGAAGTGATTTATGTGCCCACGGACGAAACCGAAGACGATATGAAGGCGTGCTATGAGGAGCAGGCGAACTGGTTTACTCTTAAGCTTTCTGACAGCCTGGTACCGGCACTCGTGTACATATATGAAATAACATGCATTCCACACGTTTTGGTAATCAATGTGAACGGTAGCGTTATTTCAAAACACGGTTTAATTGATTTGGTCGAATATGGTAAAAACGCTGTCGTCTCGTGGCTTTCCACATCCGGGCCGACCAAAAATCATAGAAGGGTAAGCAAAGATGCAGCGATGTACGGGACGGAGTGGCGCTTCCACAATGCGTTCAAGCCACACGCGCAGTACAAGAAAAAATTCAGCGACTTAGCTGAAGCAACCTCCAAACAAACATGA

Protein

MSESHLICPPYNYLRDAKIYNKKDEIVPWHWIEENADILVLLFTAKGIDKDGIIENFYKIYENVKHRNFPLEVIYVPTDETEDDMKACYEEQANWFTLKLSDSLVPALVYIYEITCIPHVLVINVNGSVISKHGLIDLVEYGKNAVVSWLSTSGPTKNHRRVSKDAAMYGTEWRFHNAFKPHAQYKKKFSDLAEATSKQT

Uniprot

H9J4K9 A0A0L7L2S8 A0A212ERJ0 A0A2H1W5B7 A0A2W1BG85 A0A2H1W4Y0 + More
A0A2A4K8B5 A0A0N1I9Y6 A0A2H1W6N7 A0A194Q590 A0A194Q5S1 A0A061IFD9 A0A0P6I6C2 A0A0N8EN30 A0A1D2N6H8 A0A1U7Q3P2 A0A3B3BPZ0 A0A232F1A1

Pubmed

19121390 26227816 22118469 28756777 26354079 23929341 + More
29704459 27289101 29451363 28648823

EMBL

BABH01021902 JTDY01003330 KOB69720.1 AGBW02013005 OWR44110.1 ODYU01006367 + More
SOQ48156.1 KZ150066 PZC74139.1 SOQ48155.1 NWSH01000046 PCG80246.1 PCG80247.1 KQ460009 KPJ18459.1 SOQ48154.1 KQ459460 KPJ00708.1 KPJ00704.1 KE672241 RAZU01000141 ERE79454.1 RLQ69760.1 GDIQ01010629 JAN84108.1 GDIQ01010628 JAN84109.1 LJIJ01000183 ODN00870.1 NNAY01001327 OXU24352.1

Proteomes

UP000005204 UP000037510 UP000007151 UP000218220 UP000053240 UP000053268 + More
UP000030759 UP000273346 UP000094527 UP000189706 UP000261560 UP000215335

PRIDE

H9J4K9

Pfam

PF13905 Thioredoxin_8

Interpro

IPR012336   Thioredoxin-like_fold        + More
IPR029519   RdCVF2
IPR036249   Thioredoxin-like_sf
IPR013766   Thioredoxin_domain

SUPFAM

SSF52833 SSF52833

ProteinModelPortal

H9J4K9 A0A0L7L2S8 A0A212ERJ0 A0A2H1W5B7 A0A2W1BG85 A0A2H1W4Y0 + More
A0A2A4K8B5 A0A0N1I9Y6 A0A2H1W6N7 A0A194Q590 A0A194Q5S1 A0A061IFD9 A0A0P6I6C2 A0A0N8EN30 A0A1D2N6H8 A0A1U7Q3P2 A0A3B3BPZ0 A0A232F1A1

PDB

2LUS E-value=1.20819e-05, Score=113

KEGG

101745553 K17609 nucleoredoxin [EC:1.8.1.8] | (RefSeq) nucleoredoxin-like protein 2

GO

GO:0007600 GO:0045494 GO:0007608 GO:0007601 GO:0047134 GO:0005623 GO:0045454

PANTHER

PTHR46762

Length:

200

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.63723

Exp number, first 60 AAs:

0.00264

Total prob of N-in:

0.02404

outside

1 - 200

Pi

27.556979

Theta

25.630815

Tajima's D

0.263605

CLR

2.375343

CSRT

0.447777611119444

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics