SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11886
Pre Gene Modal
BGIBMGA004450
Annotation
PREDICTED:_uncharacterized_protein_LOC105842420_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.988
 

Sequence

CDS
ATGTTCTTAGTAGGTTGGTTTTCAGCGTGTGGATGTCGCGGCGGTGCCCTGGCGTCGCCCCGGGGCTCCATAGCTGCATTACTGCGAGCGCGAGCCTTCGCCATGGTCTCGCCGCGGGCCATCTCTGCCTACAGAGCGCGGCCAACCTCAGATAATGGCCGGATCGGAGCCCAGTACGAGCGCTCGGCCGCACGACCTGGTACTCCTCTGAGGCTTGCGGGAGTGTTCGCTGATGGAAGCAAGGCTAAAGCTCCGAAGTACGCGCAGCTCATCGACCCACAAGGGAATGAGCTCTTCGTGCCGATCAATACTAAAGGGGAACTGTATGAGGTCTGTCCCGAGGAGCTCACTCCGGCAGAGTGGGAGAACGGCGAAGTACCAGTGTCTCCTCCACCTCCCGAGGCTGGCACAAAGGCGCATCGTTTGCCGCACCTGTTGAGCCTGTGGCGGCTGCCGACCAGGGTACGACTGCTGGCGGGAACGGTGCCCATCGAGATGGCACACGATGTCGGAGAAGACCTCCTGCTGCGGGCGGCAGTGACTGAACCAGTCCTTGTTATGTGCAGTCTTCCCGAATACGGTTCGATACTGTCGAGCCCCAGTAAACAAGTCGACCCACGTTACCACGCCAAAGAGGCATTGCGACTACTACCTCTCAATGGCGACATCAGAGTCCGCCGCACGCAGCTCGGCTTCGAAAACGAGAAGCGAATGTTCCTCTCCGCTCGCCTACAAAAAGCTCTAACCTTCTGTCAACACAACGTTGACAACTGGATCAGGCAGATCTCCTACGCGAACTCGTCCGTCATCGGCAAAGCGAAGACAGCTGAAGACATCATGAAAGAAGACCAGGAGCCGGTCAAATTTGAAAAGGAACGAAAATTCACACTGCAAGGCCTGAAGATCGATCCTTCCAGACTGTTCGGTAAAAGTGAAAAGGTTCTAAAAGACATACCCGACGAAACCGAAGGATCAATTATATTTTTAAGTAAAAACGAACTCGAGCACATGAACTACGAGATGTATAGCGATGACGAGGTAAAAGATAACAAGAGCGACGATAAAACAGAACAAGAGGGTTTCTCCAACGAAAAAATGCACGTCTTTCGAGAAGATCCCGGACAGAAGAAAAACAAGTGGTTTAAAAATTTAAAACTCCTGAAAAGCGCCGAGAAACTTGCAGATGATAAGGTATCGGCGAATCAAAAACCATCCGAAATACGGGATCCCTTCGATCGACTGGGAGAGAAACATAGTTCTATTGAGCGGTACCAGGACATGGCAAAGTTGATAGAGGATAGGTTCGGTGCGTCCAGAAAAAGCGACAGTACAGCCGAGAATAGCCATTCATATAAAAGCTTAACAACGTCGTCCTCCGAAATGGGAACTAGTCAATGTAGCTCAAATCACAAGAAACCGGTGCTCACAAAATCAGTTTCGGTTCAAACCGGAATGCCTAATAGCTCCGAAGACGACAACAATGAAATGAACATGAAACACGGAAGAAAGAACTTGAGTGTGGACCAAATAAATTATTGCGGGTCCATGGAAAGCGACACTAGTTCGGGCAGAAAGCTGAAGTCTCTCGACGAAAACATGCTAAAGAAATCATCGGCTACGAAGTCATCCTCGAATTTGGAAAGGCGCCAGAGGATCCAGCCAGATTTGATACCGGAAAAGGCTATCGTGAAATCGGAATCATACAATCAAATTCACAGCTGCGAAGACATCAATATGTACGGAGCCGGCTCTTTGTTTAACGATAGCGAATTCGAAATAAACTACAAGCAGCACTCGTTCATAACCGACAAACTCTGCTCCGAGTTCCACGTCAAGACAAAGAAGGTTCTGAGCAAGTCCACGTCTAATTTACTGCATCCTAAGAAAACGAACGATAAGAAGGAAGGCAGTAACAGCAACAGCATGCCGACGAAAACTGAACGCGGCAGTGACGCTGAGAGATTTAACTTTAGAAAGAAAATAGACAAGCCGCGGGCTCCGACCCCGAAATCGGAGGAGGAAGACGCGCTAGTCGATATTTCAGAAACGCAAACAAAAGTTAGAAGATCCATATCGTCCATACAGAAACGGAAGTTACCTGTGATAGAGGATCTGCCGTACGGTCAAGTAGCCGACGCGGTCGACGTCGATGAAGAGCCAATCGAAGCCGACGGTATATCAGATAATATATACGCTGAAATATGTCCACCGAATCATAACAAAACGGACAATGACTACGATATGAACATAGACGTGCTGGCCAACGATCCCGTTATACGTAACGTTAAAAAGGAAGTGATCACAAGAAACGATGAAAGAGCGAGACAGATGATGATCGAAAACCAGGAAAATCCCTTCAGGCACATCGAAGTGGTCGTTATAGAGAAAACTGACTTCGAACTTGACGATTCTAGTGTTACGTCCAGTGATATAGAAGATAGGCCGGCTGTATCCATAGTAGATTCGTGGGAGAGGGAGAACGATGCTAGCAAGGTCCACGCTATTCGCTTAGAAATAACATCTCACGAATATACAAACGAAAGTCAGAGTATTGACGATTCCGAAGTAGTTCTAAGTAAAGATTCGTTGAGTTTTAGTAATAGTATACATTTGAATGGCAATTATCCCAACGAAGCCATTTATGATACGTTAAAATAG
Protein
MFLVGWFSACGCRGGALASPRGSIAALLRARAFAMVSPRAISAYRARPTSDNGRIGAQYERSAARPGTPLRLAGVFADGSKAKAPKYAQLIDPQGNELFVPINTKGELYEVCPEELTPAEWENGEVPVSPPPPEAGTKAHRLPHLLSLWRLPTRVRLLAGTVPIEMAHDVGEDLLLRAAVTEPVLVMCSLPEYGSILSSPSKQVDPRYHAKEALRLLPLNGDIRVRRTQLGFENEKRMFLSARLQKALTFCQHNVDNWIRQISYANSSVIGKAKTAEDIMKEDQEPVKFEKERKFTLQGLKIDPSRLFGKSEKVLKDIPDETEGSIIFLSKNELEHMNYEMYSDDEVKDNKSDDKTEQEGFSNEKMHVFREDPGQKKNKWFKNLKLLKSAEKLADDKVSANQKPSEIRDPFDRLGEKHSSIERYQDMAKLIEDRFGASRKSDSTAENSHSYKSLTTSSSEMGTSQCSSNHKKPVLTKSVSVQTGMPNSSEDDNNEMNMKHGRKNLSVDQINYCGSMESDTSSGRKLKSLDENMLKKSSATKSSSNLERRQRIQPDLIPEKAIVKSESYNQIHSCEDINMYGAGSLFNDSEFEINYKQHSFITDKLCSEFHVKTKKVLSKSTSNLLHPKKTNDKKEGSNSNSMPTKTERGSDAERFNFRKKIDKPRAPTPKSEEEDALVDISETQTKVRRSISSIQKRKLPVIEDLPYGQVADAVDVDEEPIEADGISDNIYAEICPPNHNKTDNDYDMNIDVLANDPVIRNVKKEVITRNDERARQMMIENQENPFRHIEVVVIEKTDFELDDSSVTSSDIEDRPAVSIVDSWERENDASKVHAIRLEITSHEYTNESQSIDDSEVVLSKDSLSFSNSIHLNGNYPNEAIYDTLK

Summary

Pfam
PF13905   Thioredoxin_8
Interpro
IPR029519   RdCVF2        + More
IPR012336   Thioredoxin-like_fold       

Ontologies

Topology

Length:
885
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04555
Exp number, first 60 AAs:
0.04555
Total prob of N-in:
0.00211
outside
1  -  885
 
 

Population Genetic Test Statistics

Pi
275.34009
Theta
174.921921
Tajima's D
0.237262
CLR
0.565664
CSRT
0.435028248587571
Interpretation
Uncertain
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