SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11880
Pre Gene Modal
BGIBMGA004446
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_centrosomal_protein_of_104_kDa_[Bombyx_mori]
Location
Bomo_Chr20(+):2786998-2791555      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.817
 

Sequence

CDS
ATGATCCATTACGACCACGAACCGTCCAAACTTCAGCTTAAAGAGCGACCCATCACGGTTTACGAGCCGCTGCATTTGGACTACAGAGATTCCCCCAGCTTGGGATCTCCCAAAACATCCAAGAATGATGTGAGAAGCATGGATTCGTTACCCACGGACTCTCCCCAAATGTCCAGGAACGAACTACGGTGTGACTCGGATTGCCGAAGTTTGGACTCTCCAAAAGTGAAAGCGGATTATTATAGAGAAGTTCTAGATTCTCCAAAGCTGGTTGGAGCAATCAGGAATATGCACTTAGACGAGGGTAGTCAGATGGATGAGAGTGGGTATTATAGCCCAGGTAGAAGACAACAAGTGCACGGTGATCATTACGAGGGTTATGAAGGCGGAGACGTGTGTGACGCTGTACCGGATGGTGTTGGTCTACACACCACATGCACTTGGTGCGGCAGGAGAGTGAGAGCAGAAGCCCTTGAGTCCCACTATTGGAGGCGCTGCGTAGTGCTAGCGCGGTGCCCACATTGTAGAGTCGCGTTGGAGGCCAGGACTCTGCACAATCATTTGTTGGAGGAGTGCACAATGAGCGAGGGCAGCTGGAAGGTTTGTCAGAAATGTGGCGCCGCGTTGAGGGTAGAAGACAGTGACTATCATGTTAATTGTTACCCGCTTGGCATGGACGAGTGGAAATGCCCGTACTGCCTCACGAACGTGCTGGCCCGGGATCTGCCCTGGCAACGGCATCTTATGCAGTGTCCCAGGAATCCACGATTGACTAACACTTCTTAA
Protein
MIHYDHEPSKLQLKERPITVYEPLHLDYRDSPSLGSPKTSKNDVRSMDSLPTDSPQMSRNELRCDSDCRSLDSPKVKADYYREVLDSPKLVGAIRNMHLDEGSQMDESGYYSPGRRQQVHGDHYEGYEGGDVCDAVPDGVGLHTTCTWCGRRVRAEALESHYWRRCVVLARCPHCRVALEARTLHNHLLEECTMSEGSWKVCQKCGAALRVEDSDYHVNCYPLGMDEWKCPYCLTNVLARDLPWQRHLMQCPRNPRLTNTS

Summary

Uniprot
A0A2W1BHH0   A0A2A4JCI6   A0A2A4JB05   A0A2H1W961   A0A3S2LPB5   A0A212EHD0   + More
A0A0N1IPE7   A0A194Q595   A0A0L7L1E3   A0A3Q7TZX5   A0A3Q7SVH0   A0A3Q7SI26   F6XHP7   A0A2K5IBS0   A0A096MQM6   A0A096NBQ6   A0A2Y9SR84   A0A2Y9SV05   A0A2K6FCW0   A0A2Y9SZF8   A0A2Y9SXC9   A0A3Q0JUS6  
Pubmed
28756777    22118469    26354079    26227816    16341006   
EMBL
KZ150205    PZC72250.1    NWSH01002109    PCG69150.1    PCG69151.1    ODYU01006821    + More
SOQ49024.1    RSAL01000039    RVE50999.1    AGBW02014916    OWR40888.1    KQ460547    KPJ14027.1    KQ459460    KPJ00713.1    JTDY01003633    KOB69240.1    AAEX03003884    AHZZ02015128    AHZZ02015129    AHZZ02015130   
Proteomes
UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000286640    UP000002254    UP000233080    UP000028761    UP000248484    UP000233160   
Interpro
IPR011989   ARM-like        + More
IPR008979   Galactose-bd-like_sf       
IPR016024   ARM-type_fold       
IPR034085   TOG       
IPR001943   UVR_dom       
SUPFAM
SSF49785   SSF49785        + More
SSF48371   SSF48371       
Gene 3D
1.25.10.10     2.60.120.260    
ProteinModelPortal
A0A2W1BHH0   A0A2A4JCI6   A0A2A4JB05   A0A2H1W961   A0A3S2LPB5   A0A212EHD0   + More
A0A0N1IPE7   A0A194Q595   A0A0L7L1E3   A0A3Q7TZX5   A0A3Q7SVH0   A0A3Q7SI26   F6XHP7   A0A2K5IBS0   A0A096MQM6   A0A096NBQ6   A0A2Y9SR84   A0A2Y9SV05   A0A2K6FCW0   A0A2Y9SZF8   A0A2Y9SXC9   A0A3Q0JUS6  
PDB
5LPI     E-value=3.65029e-11,     Score=162

Ontologies

KEGG
101744969    K16458 centrosomal protein CEP104 | (RefSeq) centrosomal protein of 104 kDa
GO
GO:0005814   GO:0005929  

Topology

Length:
261
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05438
outside
1  -  261
 
 

Population Genetic Test Statistics

Pi
270.865625
Theta
148.574546
Tajima's D
2.527844
CLR
0
CSRT
0.948902554872256
Interpretation
Uncertain
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