Gene

KWMTBOMO11879

Pre Gene Modal

BGIBMGA004446

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_centrosomal_protein_of_104_kDa_[Bombyx_mori]

Location

Bomo_Chr20(+):2764888-2782244      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.791

CDS

ATGGTGCGGCGCGTGAGGTTTTTGTACAATTTTAACACTATTTTCGTCACTTTATTCGCATCAGCTACGGAGCGCAACAGACAGCGTGTGGTCTCGACAGCGGAACGGAGCGGAATTCCTATAGATACTTTTAAAGTATTTGAGAATAACGCGGCTTGCGTGGAAGTGCTAGTATCAGGAGGGTTGGTGTCCGAAGGAGCTGCAACACCATGCGGGGCGACCTACACGAGCGTCGGGAAGGTGACCCTCGCGAAACCGGCACCTCAGGCCAGGACCAGAGAACTCAGGTCAGCGGCCCTTCCAGAGTCAACGATAGCAAGATTCGTGAAGCTTAAATTGTCTGGACCTCATCCCCCAGCTAAAGAGACTGATCAGATAGCGCTAATGGCTGTGAATGTTCTGGGCGAAATCGTAGAGTGCCCAGAGAAAGCTCAGACGGTAGTAAAAACCGAGACTCTATACTCACCGTACGACGATCTGGCCTTTGTTATGTACGTGGACAATGAAATAGCTGATCTCATCAGGAGTTTGGATGAGAAGAAGAAAACGGCTGTTACAGAAGAACGTTTTGAATACGCCCGTCGGCTGAAGTCCGCCGGGGCAGCCCTAGCAGCCGCCGGCATACGAATCGGTCGCTGGAGACTGCGCAAGAGGACCGCAGCCGTCAGAGATGACTTTGAGCTGGCACGACGGATGAGGGACAGGATCGCTGATGCTCTAACTGGAGTGAAAGAAGATCCGCAGCTCTGCAGATTGTTTGAAGAGGATGGGGTAGATCCCCGCAATGACTCGTCGATGCCTCAGGAGTACGATTTCTCGCACCACCTCTCCCCATCCGTGGCTGCAGGCTCTCTAAGCTTGGATATACCGTCTCCGGTTCCTCCGATACATCAAGAAACCGATGAGATTGATTTTATCAATGGCAACGACGAAGACCAGATAGAACAAGCTCAAAAGTCCCCAGTACATCTTCTAGAAGACGTAGAGGTACCAAGTACACAGCACTCCTCCATCCCGCACTTACAAGCCGTCCAAAATGCACAAGAAGAGAAATTAGAACAGAAAAAAATCGAACAGAAGATTGAGGAAGATGAGACGAGAACGACTGACAGTCCACGCAGGAGCGTCACCCCGAATGCAGCTAACGGTACCTTGGTAAGGAGGAGAAACAAGAGTGCTGGCCCCAGATCTACCTTCGATGCTTACGAAGAACGCCTGCTGCCGGCCCTAAGGCATTCTCATACCAACGAGTATCTCCGGGAGGCTCGCGAGGAGGAGGGCAGCGGGAGTAGCGCGCCTCTACCGTCCCGTGTCTCTCACAAGCTCAATGAGAGGGAGAGGAAGCAAGCAGCTCTACCTATACTTATATTCGGATACCCTCTGGTAGAGAAGTTCTTCTCCAAGAACTACTTGGACAAGGAGGAGGGTCTGAATCGTCTCAGAGCAGAACTAACTTCGCCGTCGAACGGAAGCACCAAGACTTCTCCGAACAAAACCGCGAGGGCGGCCGCCATCTTGCTGCAAAGAGCTTTGAGAGATAAAGTCTTTTCCGTGTACAGTCAGGCCAATGAAGTTGTCAGAGTTCTGTTCAAGGATTTCGTACCGGACAGGGTGTGTTCGGCGGAGGTGGGGCGGTGTCTGGAGAAGCTGTTGCCGGAACTGCTGCGCGCGTGCGGGGACCCGGCGCCCAGGGTGCACTCCACCGCGCAGCACACCGTCCTCACCGTGGCGGACTGCCCGCAAGTCAGAGCCCTCCACATCATACCTCAGCAGTTAGTCCGTCCAGTGGCGGCCTCTATGCATCCACGACTGGCCCTCTCCCGTCTACAGATGCTGGAACAACTCATACTGACCCACGGCATATCCACTGACAAGAACAGGTAA

Protein

MVRRVRFLYNFNTIFVTLFASATERNRQRVVSTAERSGIPIDTFKVFENNAACVEVLVSGGLVSEGAATPCGATYTSVGKVTLAKPAPQARTRELRSAALPESTIARFVKLKLSGPHPPAKETDQIALMAVNVLGEIVECPEKAQTVVKTETLYSPYDDLAFVMYVDNEIADLIRSLDEKKKTAVTEERFEYARRLKSAGAALAAAGIRIGRWRLRKRTAAVRDDFELARRMRDRIADALTGVKEDPQLCRLFEEDGVDPRNDSSMPQEYDFSHHLSPSVAAGSLSLDIPSPVPPIHQETDEIDFINGNDEDQIEQAQKSPVHLLEDVEVPSTQHSSIPHLQAVQNAQEEKLEQKKIEQKIEEDETRTTDSPRRSVTPNAANGTLVRRRNKSAGPRSTFDAYEERLLPALRHSHTNEYLREAREEEGSGSSAPLPSRVSHKLNERERKQAALPILIFGYPLVEKFFSKNYLDKEEGLNRLRAELTSPSNGSTKTSPNKTARAAAILLQRALRDKVFSVYSQANEVVRVLFKDFVPDRVCSAEVGRCLEKLLPELLRACGDPAPRVHSTAQHTVLTVADCPQVRALHIIPQQLVRPVAASMHPRLALSRLQMLEQLILTHGISTDKNR

Uniprot

H9J4K6   A0A3S2LPB5   A0A212EHD0   A0A194Q595   A0A2W1B990   A0A2H1W961   + More
A0A0L7L4I1   D6WRF6   A0A139WFR2   E9J7A0   A0A158NLN6   A0A0J7KZR8   E2B0Q0   A0A1Y1L5V8   A0A0C9R2U5   A0A1A9W6V3   A0A1B0C8R1   A0A1B0AN27   A0A0Q9X583   A0A1A9YFU4   A0A1B0G465   A0A2J7PSH3   A0A067RII2   A0A2J7PSH0   A0A0Q5VYZ3   A0A336LSB6   A0A2J7PSK1   W8BDS9   A0A2J7PSH2   A0A1W4VG17   A0A0R1DPH1   A0A0J9R4M3   A0A2P8Y4D9   A0A0P8XWI0   A0A0R3NQN1   B4KIA1   A0A0R3NY47   B3NM38   B4JPE0   A0A1A9ZHA5   W8B924   A0A1W4V2G8   A0A1S3CWM7   B4PB03   A0A1A9V7B5   Q9VIU5   A0A0J9R438   B3MN49   Q29PC0   B4GKH6   A0A1B6L5S4   A0A0R3NQT6   A0A0R3NR12   B4MU66   J9JZ90   T1I0C3   B4QA00  

Pubmed

19121390    22118469    26354079    28756777    26227816    18362917    + More
19820115    21282665    21347285    20798317    28004739    17994087    24845553    18057021    24495485    17550304    22936249    29403074    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01021884    BABH01021885    BABH01021886    BABH01021887    RSAL01000039    RVE50999.1    + More
AGBW02014916    OWR40888.1    KQ459460    KPJ00713.1    KZ150205    PZC72249.1    ODYU01006821    SOQ49024.1    JTDY01003088    KOB70169.1    KQ971351    EFA06461.2    KYB26803.1    GL768455    EFZ11304.1    ADTU01019553    LBMM01001796    KMQ95734.1    GL444666    EFN60722.1    GEZM01066093    JAV68191.1    GBYB01010534    JAG80301.1    AJWK01001278    AJWK01001279    AJWK01001280    JXJN01000695    CH933807    KRG03228.1    CCAG010000092    NEVH01021928    PNF19284.1    KK852611    KDR20255.1    PNF19285.1    CH954179    KQS61879.1    KQS61880.1    UFQT01000093    SSX19613.1    PNF19286.1    GAMC01011412    JAB95143.1    PNF19283.1    CM000158    KRJ99174.1    KRJ99175.1    CM002910    KMY91038.1    PYGN01000944    PSN39132.1    CH902620    KPU73737.1    CH379058    KRT03432.1    EDW12394.1    KRT03430.1    EDV54638.1    CH916372    EDV98770.1    GAMC01011413    JAB95142.1    EDW90432.1    AE014134    AY058453    AAF53820.2    AAL13682.1    KMY91037.1    EDV32027.1    EAL34373.1    CH479184    EDW37142.1    GEBQ01020961    JAT19016.1    KRT03431.1    KRT03433.1    CH963852    EDW75655.1    ABLF02039538    ACPB03005132    CM000361    EDX05530.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053268    UP000037510    UP000007266    + More
UP000005205    UP000036403    UP000000311    UP000091820    UP000092461    UP000092460    UP000009192    UP000092443    UP000092444    UP000235965    UP000027135    UP000008711    UP000192221    UP000002282    UP000245037    UP000007801    UP000001819    UP000001070    UP000092445    UP000079169    UP000078200    UP000000803    UP000008744    UP000007798    UP000007819    UP000015103    UP000000304   

PRIDE

H9J4K6    Q9VIU5   

Pfam

PF00535   Glycos_transf_2

Interpro

IPR011989   ARM-like        + More
IPR008979   Galactose-bd-like_sf       
IPR016024   ARM-type_fold       
IPR039528   DPM1-like       
IPR001173   Glyco_trans_2-like       
IPR029044   Nucleotide-diphossugar_trans       
IPR013083   Znf_RING/FYVE/PHD       
IPR001943   UVR_dom       
IPR034085   TOG       

SUPFAM

SSF49785   SSF49785        + More
SSF48371   SSF48371       
SSF53448   SSF53448       

Gene 3D

1.25.10.10     2.60.120.260     3.90.550.10     3.30.40.10    

CDD

cd06442  DPM1_like

ProteinModelPortal

H9J4K6   A0A3S2LPB5   A0A212EHD0   A0A194Q595   A0A2W1B990   A0A2H1W961   + More
A0A0L7L4I1   D6WRF6   A0A139WFR2   E9J7A0   A0A158NLN6   A0A0J7KZR8   E2B0Q0   A0A1Y1L5V8   A0A0C9R2U5   A0A1A9W6V3   A0A1B0C8R1   A0A1B0AN27   A0A0Q9X583   A0A1A9YFU4   A0A1B0G465   A0A2J7PSH3   A0A067RII2   A0A2J7PSH0   A0A0Q5VYZ3   A0A336LSB6   A0A2J7PSK1   W8BDS9   A0A2J7PSH2   A0A1W4VG17   A0A0R1DPH1   A0A0J9R4M3   A0A2P8Y4D9   A0A0P8XWI0   A0A0R3NQN1   B4KIA1   A0A0R3NY47   B3NM38   B4JPE0   A0A1A9ZHA5   W8B924   A0A1W4V2G8   A0A1S3CWM7   B4PB03   A0A1A9V7B5   Q9VIU5   A0A0J9R438   B3MN49   Q29PC0   B4GKH6   A0A1B6L5S4   A0A0R3NQT6   A0A0R3NR12   B4MU66   J9JZ90   T1I0C3   B4QA00  

PDB

5LPH     E-value=2.92901e-12,     Score=176

KEGG

101744969    K16458 centrosomal protein CEP104 | (RefSeq) centrosomal protein of 104 kDa

GO

GO:0016021   GO:0005929   GO:0016740  

Length:

627

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.15831

Exp number, first 60 AAs:

5.12654

Total prob of N-in:

0.29122

outside

1  -  627

 

 

Pi

247.767122

Theta

149.46227

Tajima's D

2.134473

CLR

0.422312

CSRT

0.901954902254887

Interpretation

Uncertain