SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11875
Pre Gene Modal
BGIBMGA004444
Annotation
PREDICTED:_protein_Cep89_homolog_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.932
 

Sequence

CDS
ATGGATATCAAGAGAAACGGAAAGATATCAAGACATAGTAAGCCAAAAACTGATAAGTTAACTCTGTCTGGAAATTTTACTTCTCAGCATCGAGCTTTTGATGTGATACCCCACTGTGATAGAGAGATCATGAGACAAAATATTTTAGAACAGGTTATGAAGAAGACAGGACAAGTAAGACAAAATAAAGATGACGGGATGTATGAGGATCCGAGAGATATTATTGTTACAGAGAAACCCGTAAAACCACCAAGGAAACGTACCGCTCATACAGTTACTACTACATCAACATGTCAGTCTAAAGACAAAAGTCTAGCAAAAGAACAAAAAAGAAAATTAACAAAAAAATATGAAATACTGGTTACTTCCTTGATGGAGAAGTGTGAAGAGAATATAGCGGTGATTTCAGAAAAAGACAACCAAATAGCAAAACTTAAAGACAAACTCAAGACTGTCTTAGAGTACAACAAACTGTTTGCAGAAGAGAATGACCAACTTAGAAAGCAGTATGAAGTCGCATTAAAATATGTAGAAGACTGTAAGACAGGTATTAGAGAGGAGAGGAGTAGAAATAGAGATCTGGAAGAGAAGAACAAAGAGTTGGATGAGAGAGTTAAGAAATTTGAAATGCCTGATAGAGATAATTGCGGGTCAACAGCGATTCCTTTAGTGGAAGTGTGTATGAGCTGCAGCAGCCGACAGATCATACTGAACCAGGCGAGGGAGCAGAATTCGAGGTTGCAGAAGGACATGCAGGCGCTCAAGGATGTCTTGTATCGGCTCAATGTTCAATTGGCGAATTACCAAGAGAGACTGCGTAGCTCACGTACCGACAGCAAAACAGAATGTGCCTACAAACCGTCTGAGAAATATAACGCCTTTGATTCTTTGATAACGACCAGTCTAGTCTATAAAGGAACCGGTGCAGCTAACGATGATGGACATTCACAGAAGACAGTCTTCGAGGAGCAGCACAGCGCCGGTCGTGTCACCGACCTGTCTGGTCTGCTGAGCGCACAAGCACTGGCACCGCTATTCGACGCCTACCAAGATAATTTACAAGAGAAGGACAATTTGATTGTCGATTACGAGAAGCAGTTCGAGAACATGAACAAGAAGTCGAAACTGATCGTTGACGAGAAGAAGGGTCTGAGCGAGAGGGTGAAGGCTCTAGAGATGGAGCTGGCCGAAACGAGACAGAAATACAAAAAGGTGCACGTCGAGAAAGAGACGGCCGACATCGAGAAGGCGACGCTGCTGGAACGCGCCGAGCGGGCGGAGACTAAACTGAAGGAGGTCTTCGAACTTTACGAGAACAAAATAACGGCGATGATGCGCGATTACGAAACGGTACACCGCGAGTACTTCGCCGTCAAGAACGCTCTGGAAGCTTCCGAGGGCAAGATGGCGCAGCTCGACGCCCTCCGCGCCCGCACCGTCCCCGCCGACCTGCACGAGCGCCGCCTCGAGCACTGCAAGCGATTGCTCGAAGAATTAAAACACCAATACAACATGGAGACGGAACGCAAGAACGACCAGCTCGCCAAGATGCAGGAGCGCGTCGCCGCAGTCGACGACAAATTTAACAAGCTTAACGAGCAGTATCAGAGAACCAAACAAGAGCTGGAGGTCGCTTTGAAGAACGTCAGGTTATACAGGAAAGCGGCCGTTATATTCCGTCAGCGCTTAAAAGCGACCACAGCTCGTTTCTCGAAAGCTCGTAACAGCGCGCGGCGCTCACGAACCAACAACGAGCCCCTGAAGCGAGCTCTGATGGCCTTAGATAAGATCAAACAAGAAATAAAGCTCGTGAAGGCACGCGCGTACTCATCACTGGACGAGCTGGAGAGACGCCTGTTGTCACAGGAGCGCAGGGCTGCTCACGCTCATGCGGAGCACCGGAGGGAGCTCGAGCGAGCCTCGCTGGCTCTCGAGCACAAAGAGAATATCATAAGGAACCTCATTGATAAAGTGGCTGATGTGGAGGAAGTCAGGCTGAGTCAAACGAACACGCAGAGGTTACAGGGGGTCGTCTCAGATTCATCGGATGACGAGTCGCCGCTCGAAGGATAA
Protein
MDIKRNGKISRHSKPKTDKLTLSGNFTSQHRAFDVIPHCDREIMRQNILEQVMKKTGQVRQNKDDGMYEDPRDIIVTEKPVKPPRKRTAHTVTTTSTCQSKDKSLAKEQKRKLTKKYEILVTSLMEKCEENIAVISEKDNQIAKLKDKLKTVLEYNKLFAEENDQLRKQYEVALKYVEDCKTGIREERSRNRDLEEKNKELDERVKKFEMPDRDNCGSTAIPLVEVCMSCSSRQIILNQAREQNSRLQKDMQALKDVLYRLNVQLANYQERLRSSRTDSKTECAYKPSEKYNAFDSLITTSLVYKGTGAANDDGHSQKTVFEEQHSAGRVTDLSGLLSAQALAPLFDAYQDNLQEKDNLIVDYEKQFENMNKKSKLIVDEKKGLSERVKALEMELAETRQKYKKVHVEKETADIEKATLLERAERAETKLKEVFELYENKITAMMRDYETVHREYFAVKNALEASEGKMAQLDALRARTVPADLHERRLEHCKRLLEELKHQYNMETERKNDQLAKMQERVAAVDDKFNKLNEQYQRTKQELEVALKNVRLYRKAAVIFRQRLKATTARFSKARNSARRSRTNNEPLKRALMALDKIKQEIKLVKARAYSSLDELERRLLSQERRAAHAHAEHRRELERASLALEHKENIIRNLIDKVADVEEVRLSQTNTQRLQGVVSDSSDDESPLEG

Summary

Pfam
PF00431   CUB
Interpro
IPR033545   CEP89        + More
IPR000859   CUB_dom       
IPR035914   Sperma_CUB_dom_sf       
SUPFAM
SSF49854   SSF49854       
Gene 3D

Ontologies

Topology

Length:
690
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00099
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.00077
outside
1  -  690
 
 

Population Genetic Test Statistics

Pi
263.081716
Theta
185.864212
Tajima's D
1.31237
CLR
0.285731
CSRT
0.744262786860657
Interpretation
Uncertain
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