Gene

KWMTBOMO11874

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr20(+):2658738-2659467      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.994

CDS

ATGCTGGGAGTTCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGACCTCACTTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTACTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTCTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATAGCGACATCTCGTTTTTACCATCGCTCCGCCCGCCACCGGAGTAGAGTTCATCCATATTACCTGGAGCCACTGCGTTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCTTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAACGGTAGGCAGCGGCTTGGTTCTCCCCCTGGCGTTGCTGACGTCCATGAGCGACGGTAA

Protein

MLGVLNRAKRYFTPGQRLLLYKAQVRPHLEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIATSRFYHRSARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLNGRQRLGSPPGVADVHERR

Similarity

Belongs to the protein kinase superfamily. Tyr protein kinase family.

Uniprot

Q5KTM5   Q6UV17   A0A3S2LP03   A0A3S2P9Q3   A0A3S2NHP4   A0A3S2NMS5   + More
B9WPT5   A0A3S2NMX8   A0A3S2LQP1   A0A2H1VFZ3   A0A2H1WAR9   J9GT67   T2M6M7   A0A3S2TFH4   A0A2H1V2F4   A0A3S2PF93   A0A3D5S1K1   A0A1Y1S3P2   A0A3S2PHM8   A0A3S2LI48   A0A0P4VXU0   A0A2H1VUV7   A0A2H1WY65   A0A2H1WCG9   A0A2H1W7F5   A0A2H1VQC3   A0A2I0UC10   A0A2G8JWN9   W4Z5Z2   W4XMI9   K7EWV4   K7F136   A0A3B3RE95   K7EY85   K7EYK2   K7EYD9   K7EYG1   A0A131Y4D1   K7EX39   A0A091HSI0   A0A1E1XPS6   A0A3B3RWV8   K7FHG6   K7EZN0   A0A147BJ69   A0A3B3QMQ2   A0A091HUB5   A0A091I8M3   A0A1E1XGQ7   K7EXW6   K7EZT4   A0A3B3T9R4   A0A091HXV4   A0A1E1XGZ3   A0A3M0LHM4   A0A091HTM6   A0A3M0K2T6   K7F1Z4   K7EYP4   A0A091ILM0   A0A091IID5   A0A091IJH5   A0A091HLR5   K7EZY0   K7EX24   A0A3M0JI50   A0A0C9SB62   A0A2I0UP23   A0A2I0ULU4   A0A091HT90   A0A3M0JWY0   A0A091HWS9   A0A091IMH2   A0A091I682   A0A091IFK3   W4YZP0   A0A091J2N9   A0A091I6V6  

Pubmed

23251564    24065732    30148503    28345194    29023486    17381049    + More
29240929    29209593    28503490    26131772   

EMBL

AB126052    BAD86652.1    AY359886    AAQ57129.1    RSAL01002067    RVE40593.1    + More
RSAL01000164    RVE45343.1    RSAL01003136    RVE40332.1    RSAL01000002    RVE54942.1    FM995623    CAX36785.1    RVE55041.1    RVE55094.1    RSAL01000422    RVE41792.1    ODYU01002162    SOQ39302.1    ODYU01007424    SOQ50185.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    RSAL01000193    RVE44603.1    ODYU01000366    SOQ35027.1    RSAL01000058    RVE49758.1    DPOC01000269    HCX22453.1    LWDP01000391    ORD92879.1    RSAL01000030    RVE51708.1    RSAL01000110    RVE47159.1    GDRN01105059    JAI57791.1    ODYU01004409    SOQ44252.1    ODYU01011959    SOQ58001.1    ODYU01007423    SOQ50184.1    ODYU01006795    SOQ48973.1    ODYU01003793    SOQ42997.1    KZ505886    PKU43598.1    MRZV01001153    PIK40187.1    AAGJ04079835    AAGJ04112043    AGCU01000442    AGCU01063261    AGCU01082246    AGCU01035999    AGCU01094663    AGCU01122093    GEFM01001453    JAP74343.1    AGCU01040360    KL217727    KFO98087.1    GFAA01002385    JAU01050.1    AGCU01203047    AGCU01168699    GEGO01004630    JAR90774.1    KL217824    KFO99526.1    KL218275    KFP03813.1    GFAC01000919    JAT98269.1    AGCU01033893    AGCU01073976    KL217898    KFO99982.1    GFAC01000877    JAT98311.1    QRBI01000092    RMC22480.1    KL217842    KFO99658.1    QRBI01000123    RMC05540.1    AGCU01015466    AGCU01031348    KL218790    KFP08260.1    KL217819    KFO99425.1    KL217887    KFO99825.1    KL217628    KFO97213.1    AGCU01117056    AGCU01165999    QRBI01000144    RMC00666.1    GBZX01002173    JAG90567.1    KZ505669    PKU47808.1    KZ505691    PKU47026.1    KL217820    KFO99518.1    RMC05275.1    KL217834    KFO99597.1    KL218794    KFP08560.1    KL218170    KFP02963.1    KL218510    KFP06135.1    AAGJ04095885    KL218253    KL218506    KL218617    KL218759    KFP03494.1    KFP06081.1    KFP07017.1    KFP07846.1    KL218277    KFP03922.1   

Proteomes

UP000283053    UP000230750    UP000007110    UP000007267    UP000261540    UP000054308    + More
UP000269221   

PRIDE

Q5KTM5    Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01873   eIF-5_eIF-2B
PF01585   G-patch
PF08159   NUC153
PF00458   WHEP-TRS
PF02182   SAD_SRA
PF00097   zf-C3HC4
PF00086   Thyroglobulin_1
PF07714   Pkinase_Tyr
PF00083   Sugar_tr
PF16030   GD_N

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR002735   Transl_init_fac_IF2/IF5       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000738   WHEP-TRS_dom       
IPR009068   S15_NS1_RNA-bd       
IPR013083   Znf_RING/FYVE/PHD       
IPR036987   SRA-YDG_sf       
IPR018957   Znf_C3HC4_RING-type       
IPR015947   PUA-like_sf       
IPR017907   Znf_RING_CS       
IPR001841   Znf_RING       
IPR003105   SRA_YDG       
IPR036857   Thyroglobulin_1_sf       
IPR000716   Thyroglobulin_1       
IPR000719   Prot_kinase_dom       
IPR008266   Tyr_kinase_AS       
IPR020635   Tyr_kinase_cat_dom       
IPR017441   Protein_kinase_ATP_BS       
IPR001245   Ser-Thr/Tyr_kinase_cat_dom       
IPR011009   Kinase-like_dom_sf       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR005828   MFS_sugar_transport-like       
IPR031986   GD_N       

SUPFAM

SSF56219   SSF56219        + More
SSF75689   SSF75689       
SSF100966   SSF100966       
SSF54928   SSF54928       
SSF50978   SSF50978       
SSF47060   SSF47060       
SSF88697   SSF88697       
SSF57610   SSF57610       
SSF56112   SSF56112       
SSF103473   SSF103473       

Gene 3D

3.60.10.10     3.30.70.330     2.30.280.10     3.30.40.10     4.10.800.10    

CDD

cd12647  RRM_UHM_SPF45
cd00191  TY
cd06174  MFS

ProteinModelPortal

Q5KTM5   Q6UV17   A0A3S2LP03   A0A3S2P9Q3   A0A3S2NHP4   A0A3S2NMS5   + More
B9WPT5   A0A3S2NMX8   A0A3S2LQP1   A0A2H1VFZ3   A0A2H1WAR9   J9GT67   T2M6M7   A0A3S2TFH4   A0A2H1V2F4   A0A3S2PF93   A0A3D5S1K1   A0A1Y1S3P2   A0A3S2PHM8   A0A3S2LI48   A0A0P4VXU0   A0A2H1VUV7   A0A2H1WY65   A0A2H1WCG9   A0A2H1W7F5   A0A2H1VQC3   A0A2I0UC10   A0A2G8JWN9   W4Z5Z2   W4XMI9   K7EWV4   K7F136   A0A3B3RE95   K7EY85   K7EYK2   K7EYD9   K7EYG1   A0A131Y4D1   K7EX39   A0A091HSI0   A0A1E1XPS6   A0A3B3RWV8   K7FHG6   K7EZN0   A0A147BJ69   A0A3B3QMQ2   A0A091HUB5   A0A091I8M3   A0A1E1XGQ7   K7EXW6   K7EZT4   A0A3B3T9R4   A0A091HXV4   A0A1E1XGZ3   A0A3M0LHM4   A0A091HTM6   A0A3M0K2T6   K7F1Z4   K7EYP4   A0A091ILM0   A0A091IID5   A0A091IJH5   A0A091HLR5   K7EZY0   K7EX24   A0A3M0JI50   A0A0C9SB62   A0A2I0UP23   A0A2I0ULU4   A0A091HT90   A0A3M0JWY0   A0A091HWS9   A0A091IMH2   A0A091I682   A0A091IFK3   W4YZP0   A0A091J2N9   A0A091I6V6  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0016021   GO:0003723   GO:0005634   GO:0046872  

PANTHER

PTHR13288   PTHR14927  

Subcellular location

Nucleus  

Length:

185

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000730000000000001

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.17818

outside

1  -  185

 

 

Pi

73.642178

Theta

67.470554

Tajima's D

0.28572

CLR

2.648062

CSRT

0.459777011149443

Interpretation

Uncertain