Gene

KWMTBOMO11869

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr20(+):2410982-2413057      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.65 Nuclear   Reliability : 1.532

CDS

ATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAATCCGAGATGCTAGGTGGTCTGATTTCTTAGAAGGACTCGCGCCCTCTCAAAGGTCTTACTACCGTTTAGCTCGTACTCTCAAATCGGATACGGTTGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGTCGACTCGCGGCGTTTGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCATTCAATCCGCGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCAATGGAAGTTAAAGACCTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCATCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCAGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGTTACCGCCCGATTAGCCTCCTCATGTCTCTGGGCAAACTGTATGAGCGTTTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCAAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTGCAAATCACTCATGCGTACAACAGGTGCACCGCCTCACGGAGCACATTCTTGTAGGACTTAACCGACCAAAACCGATCTATACGGGAGCCCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTTTTCAACATGGGCGTACCGGATAGTCTCGTGCTCATCATACGAGACTTCTTGTCTAACCGCTCTTTTCGATATCGAGTAGAGGGAACCCGCTCCTCCCCGCGACCACTCACGGCTGGAGTCCCGCAAGGCTCCGTTCTCTCTCCGCTCCTATTTAGTTTATTTATTAACGATATTCCCCGGTCGCCGCCGACTCAGCTAGCCTTATTCGCTGACGACACAACCGTTTACTACTCAAGTAGAAACAAGTCCCTAATCGCGAGTAAGCTCCAGAGTGCAGCGTTAACCCTCGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGCACAGCAGTGTTATTTCAAAGGGGAAACTCACCGCTTATTTCCTCCCGCATTAGGAGGAGAAATATCACACCCCCGATCACCCTCTTCGGCCAACCTATACCCTGGGCTAGGAAGGTCAAGTACCTGGGAGTCACCCTGGATGCATCCATGACATTCCGCCCGCATATAAAAACAGTCCGCGATCGTGCCGCATTTATTCTCGGCAGACTCTATCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCCGTCGGGGCTCCGTGGTTCGTGAGGAACGTCGACCTACACGACGACCTGGGCCTCGAATCGATCCGCAAACACATGAAGTCAGTGTCGGAACGTTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCTGCCGCTGACTACTCCCGAATCCTGATCACGCAGGAGCAAGTCACCGTCGTCGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAA

Protein

MRALQRDVKSRIAEIRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSIQSADPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPIQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSRILITQEQVTVVALDTSLRIHQIQ

Uniprot

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   O96546   A0A0N0PA09   + More
A0A1Y1NA23   A0A139WA11   V5GNF3   A0A139W8G9   V5GNJ2   A0A2S2PR14   J9KKL3   X1WLB2   X1WMU5   X1WWC4   A0A023EYS8   A0A3N5Z7I3   X1WXU3   A0A224XF24   A0A087U2S8   A0A2H8U0H5   A0A2J7RS81   Q07995   J9KC83   A0A023F6S4   A0A2J7Q627   A0A2J7R7D0   A0A2S2QEE0   A0A2S2PX53   X1WN18   A0A2S2Q352   A0A2J7PVX3   A0A0C9RJA4   A0A2S2RAN7   J9KCZ4   A0A2J7Q059   X1WZH0   A0A023EZE6   A0A2J7QUJ9   A0A2S2QJM7   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RM10   A0A2J7PQB5   A0A2J7RIW7   A0A2J7Q4F7   A0A2J7R8R8   A0A2S2N814   A0A2J7RB54   A0A2J7RPU2   A0A2S2QTZ8   A0A1Y1M7E9   A0A1Y1LKN6   A0A2M4BEF4   A0A2J7RL12   A0A2J7PDM0   A0A2J7R2E1   A0A2M4BEZ9   A0A2J7QFL0   A0A2J7RKP3   A0A2J7RS77   X1WNI2   J9LC21   A0A2J7Q0Q6   D7EM17   A0A2J7PMP9   A0A2M4BDA5   A0A2M4BD66   A0A2J7R6U1   A0A2M4BD62   A0A2J7QTW2   K7IN67   A0A2M4BDV6   A0A2J7PU96   A0A0A9YJ00   A0A2A4K8E7   A0A069DZC5   A0A2J7QR37   A0A069DW01   A0A224XB44   A0A2M4BD67   A0A2J7Q2R1   A0A2M4CV52   A0A182GB02   A0A2J7PBY3   A0A2J7QY69   A0A2J7Q1Y9   A0A2S2Q383   A0A1Y1KUU7   A0A0A9YU04   A0A069DVA6   J9LC15   J9LF86   A0A2J7PDS9  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    30086797    8387152    20075255    25401762    26334808    26483478   

EMBL

AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ459259    KPJ02068.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    GALX01005359    JAB63107.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02042518    ABLF02057746    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02003961    ABLF02059872    GBBI01004395    JAC14317.1    RPOV01000134    RPJ78669.1    ABLF02008933    GFTR01008038    JAW08388.1    KK117880    KFM71667.1    GFXV01007093    MBW18898.1    NEVH01000269    PNF43694.1    S59870    AAB26437.2    ABLF02033757    GBBI01001646    JAC17066.1    NEVH01017542    PNF24034.1    NEVH01006736    PNF36716.1    GGMS01006359    MBY75562.1    GGMS01000737    MBY69940.1    ABLF02021177    ABLF02027367    ABLF02066338    GGMS01002955    MBY72158.1    NEVH01020940    PNF20481.1    GBYB01008290    JAG78057.1    GGMS01017914    MBY87117.1    ABLF02008463    NEVH01020071    PNF21969.1    ABLF02034467    GBBI01004571    JAC14141.1    NEVH01010546    PNF32261.1    GGMS01008766    MBY77969.1    NEVH01023962    PNF17612.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01022639    PNF18527.1    NEVH01003017    PNF40781.1    NEVH01018383    PNF23463.1    NEVH01006721    PNF37225.1    GGMR01000676    MBY13295.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    GGMS01012005    MBY81208.1    GEZM01038405    JAV81653.1    GEZM01053022    JAV74219.1    GGFJ01002256    MBW51397.1    NEVH01002704    PNF41489.1    NEVH01026386    PNF14434.1    NEVH01007838    PNF34986.1    GGFJ01002257    MBW51398.1    NEVH01014858    PNF27387.1    NEVH01002716    PNF41415.1    NEVH01000280    PNF43672.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01019964    PNF22161.1    KQ973412    EFA12510.2    NEVH01023961    PNF17613.1    GGFJ01001842    MBW50983.1    GGFJ01001844    MBW50985.1    NEVH01006754    PNF36554.1    GGFJ01001843    MBW50984.1    NEVH01011193    PNF32021.1    GGFJ01001857    MBW50998.1    NEVH01021205    PNF19912.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NWSH01000032    PCG80497.1    GBGD01000880    JAC88009.1    NEVH01011985    PNF31054.1    GBGD01000799    JAC88090.1    GFTR01008262    JAW08164.1    GGFJ01001858    MBW50999.1    NEVH01019080    PNF22876.1    GGFL01004957    MBW69135.1    JXUM01241784    KQ635293    KXJ62492.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01019376    PNF22596.1    GGMS01002992    MBY72195.1    GEZM01074951    JAV64378.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GBGD01000881    JAC88008.1    ABLF02020655    ABLF02039168    ABLF02061060    ABLF02017815    NEVH01026154    PNF14491.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000002358    + More
UP000218220    UP000069940    UP000249989   

PRIDE

Q9XXW0    Q9BPQ0    Q93137   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   O96546   A0A0N0PA09   + More
A0A1Y1NA23   A0A139WA11   V5GNF3   A0A139W8G9   V5GNJ2   A0A2S2PR14   J9KKL3   X1WLB2   X1WMU5   X1WWC4   A0A023EYS8   A0A3N5Z7I3   X1WXU3   A0A224XF24   A0A087U2S8   A0A2H8U0H5   A0A2J7RS81   Q07995   J9KC83   A0A023F6S4   A0A2J7Q627   A0A2J7R7D0   A0A2S2QEE0   A0A2S2PX53   X1WN18   A0A2S2Q352   A0A2J7PVX3   A0A0C9RJA4   A0A2S2RAN7   J9KCZ4   A0A2J7Q059   X1WZH0   A0A023EZE6   A0A2J7QUJ9   A0A2S2QJM7   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RM10   A0A2J7PQB5   A0A2J7RIW7   A0A2J7Q4F7   A0A2J7R8R8   A0A2S2N814   A0A2J7RB54   A0A2J7RPU2   A0A2S2QTZ8   A0A1Y1M7E9   A0A1Y1LKN6   A0A2M4BEF4   A0A2J7RL12   A0A2J7PDM0   A0A2J7R2E1   A0A2M4BEZ9   A0A2J7QFL0   A0A2J7RKP3   A0A2J7RS77   X1WNI2   J9LC21   A0A2J7Q0Q6   D7EM17   A0A2J7PMP9   A0A2M4BDA5   A0A2M4BD66   A0A2J7R6U1   A0A2M4BD62   A0A2J7QTW2   K7IN67   A0A2M4BDV6   A0A2J7PU96   A0A0A9YJ00   A0A2A4K8E7   A0A069DZC5   A0A2J7QR37   A0A069DW01   A0A224XB44   A0A2M4BD67   A0A2J7Q2R1   A0A2M4CV52   A0A182GB02   A0A2J7PBY3   A0A2J7QY69   A0A2J7Q1Y9   A0A2S2Q383   A0A1Y1KUU7   A0A0A9YU04   A0A069DVA6   J9LC15   J9LF86   A0A2J7PDS9  

PDB

6AR3     E-value=0.026089,     Score=90

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

593

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

13.0204

Exp number, first 60 AAs:

0.00329

Total prob of N-in:

0.50450

outside

1  -  593

 

 

Pi

31.280891

Theta

2.295423

Tajima's D

0

CLR

0.027747

CSRT

0.413279336033198

Interpretation

Uncertain