Gene

KWMTBOMO11863

Pre Gene Modal

BGIBMGA004440

Annotation

PREDICTED:_partitioning_defective_protein_6_[Papilio_polytes]

Location

Bomo_Chr20(+):2321593-2339747      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.648 Nuclear   Reliability : 2.184

CDS

ATGTCTAAAAATAAGATAGCAGCTCGGATTGACAGTCAAACTGTCGAGGTGAAGACGAAGTTCGATGCAGAGTTCCGTCGTTTCTCGCTGAATCGTACCGAGAAACTGAAATATGACGATTTCAAAGCGCTAATCGAGAAACTGCATCGGTTACACGACGTCGCCTTCCTGATATCATACACCGATCCTAGGGACGGCGATTTACTACCCATCAACAATGATGACAACTTTGCGAGAGCATTGCTGACAGCCAGACCACTGCTCAGGGTCATAATACAAAGGAAAGGCGACAGCTTAGAAGAACTAAACGGTTATGGGACAATGCGACCGCGGAACATAATATCGTCGATCTTAAGCGGTACGCCGGCGAAGAACAAAGGACTCGCCATATCAAACCCACATGATTTTAGAATGGTGTCGGCTATAATCGACGTGGACATCGTCCCGGAGACCTGCAGGAGGGTGAAGCTGCTGAAACACGGCTCCGACAGACCATTAGGCTTCTTCATTAGGGACGGTACATCAGTACGAGTCACACCGAACGGCGTGGAGCGTTCGCCCGGTATATTTATATCGCGGCTAGTGCCAGGAGGTCTGGCGGAGTCCACGGGCCTCCTGGGGGTCAACGATGAAGTGTTGGAGGTCAACGGTATTGATGTCTCCAACAAAACACTTGATCAGGTAACGGACATGATGGTAGCCAATTCTTCGAACCTGATTATAACAGTACGTCCCGCCAATCAACGCGCCGCGCCGCACGACGCTGCGGCACACGACGCCACGCCGCACGACGCCGCGGCACACGACGCGCACACGCCCCCCGCCGACCACGACGACGACAGGTTCGATCAAGACGAGCAAGACGAGATCGTCGATCTGACCGCCGTGACGCTGGAGGAGTACCCGGAGGGCGGCGCGCGCGGCCCGGCCCGCGACGACGGACACGTGCTGCACCTCTAG

Protein

MSKNKIAARIDSQTVEVKTKFDAEFRRFSLNRTEKLKYDDFKALIEKLHRLHDVAFLISYTDPRDGDLLPINNDDNFARALLTARPLLRVIIQRKGDSLEELNGYGTMRPRNIISSILSGTPAKNKGLAISNPHDFRMVSAIIDVDIVPETCRRVKLLKHGSDRPLGFFIRDGTSVRVTPNGVERSPGIFISRLVPGGLAESTGLLGVNDEVLEVNGIDVSNKTLDQVTDMMVANSSNLIITVRPANQRAAPHDAAAHDATPHDAAAHDAHTPPADHDDDRFDQDEQDEIVDLTAVTLEEYPEGGARGPARDDGHVLHL

Similarity

Belongs to the CDP-alcohol phosphatidyltransferase class-I family.

Uniprot

A0A2W1BVG6   A0A2A4JER0   A0A3S2NRV2   A0A0N0PCK6   A0A194Q6V1   A0A2H1VN75   + More
A0A1W4WTC1   N6T1I2   A0A1Q3G0V9   Q176B0   A0A067R9K8   A0A1B6DMV8   A0A0K8TKQ3   A0A1Y1LHI3   A0A182GHT9   A0A1B6ERF9   U5ERQ4   A0A084WAJ5   A0A182M440   A0A182YFA0   A0A182RIU8   A0A182VT53   A0A182QPF2   A0A182NDD4   A0A2M3Z781   A0A2M4AJI2   W5JSW6   A0A182FTG4   A0A182VJK6   A0A182WUX1   Q7Q8X8   A0A182HYG5   A0A2J7PSG8   A0A182JQQ6   A0A182PUG8   A0A0A9YY36   A0A1L8DMQ2   A0A139WF22   A0A0T6B8A5   V5GR04   J9KAC2   A0A2S2PNE2   A0A2H8TUE7   A0A336K1L5   A0A023F4U2   A0A069DSM6   A0A0V0G9K6   T1IAA9   A0A0P4VHM2   A0A182LPX1   A0A310SIK8   A0A182TK69   A0A0M8ZRU2   A0A1J1HI01   A0A224XS57   A0A0L7RFT8   B4H9W1   Q29JD9   A0A1W4UVQ6   B3MQV2   B4R6G0   B3NWX0   A0A3B0J919   O97111   B4Q2J3   A0A1E1WPC7   A0A0A1XDA8   A0A0K8W5G0   A0A034WFY7   B4JKB8   A0A0M3QZG7   A0A0N0BDA9   W8AT66   A0A182IQJ6   A0A088A2G7   A0A2A3EB00   B4MA03   B4L7V3   E0W0G3   A0A2J7PSG9   A0A232F0U0   A0A226EX36   A0A1D2MQQ1   B4N209   K7J0F4   E2C4Z1   A0A0R3P3L1   A0A2P6L1L1   E2AIN3   A0A154NWG6   A0A151XI98   A0A151J8G3   E9FTS2   A0A158NF92   A0A151JZY1   F4WN43   A0A151I5Z4   A0A164KBQ7   A0A2H5BF90  

Pubmed

28756777    26354079    23537049    17510324    24845553    26369729    + More
28004739    26483478    24438588    25244985    20920257    23761445    12364791    14747013    17210077    25401762    26823975    18362917    19820115    25474469    26334808    27129103    20966253    17994087    15632085    9834192    10731132    12537568    12537572    12537573    12537574    15023337    15475968    16110336    17569856    17569867    22078569    26109357    26109356    26894406    17550304    25830018    25348373    24495485    20566863    28648823    27289101    20075255    20798317    21292972    21347285    21719571    29228898   

EMBL

KZ149924    PZC77624.1    NWSH01001730    PCG70309.1    RSAL01000114    RVE46939.1    + More
KQ460547    KPJ14041.1    KQ459460    KPJ00730.1    ODYU01003468    SOQ42289.1    APGK01055954    KB741271    KB630998    KB630999    KB632114    ENN71383.1    ERL83988.1    ERL83991.1    ERL88919.1    GFDL01001606    JAV33439.1    CH477391    EAT41948.1    KK852611    KDR20262.1    GEDC01030422    GEDC01026602    GEDC01015984    GEDC01010293    JAS06876.1    JAS10696.1    JAS21314.1    JAS27005.1    GDAI01002704    JAI14899.1    GEZM01055144    JAV73112.1    JXUM01064747    JXUM01064748    KQ562313    KXJ76166.1    GECZ01029311    GECZ01023706    JAS40458.1    JAS46063.1    GANO01003620    JAB56251.1    ATLV01022200    KE525330    KFB47239.1    AXCM01000018    AXCN02001767    GGFM01003613    MBW24364.1    GGFK01007467    MBW40788.1    ADMH02000540    ETN66015.1    AAAB01008933    EAA09930.4    APCN01005907    NEVH01021928    PNF19287.1    GBHO01023939    GBHO01023938    GBHO01023937    GBHO01023935    GBHO01007596    GDHC01018450    GDHC01005022    JAG19665.1    JAG19666.1    JAG19667.1    JAG19669.1    JAG36008.1    JAQ00179.1    JAQ13607.1    GFDF01006429    JAV07655.1    KQ971354    KYB26461.1    LJIG01009185    KRT83586.1    GALX01005773    JAB62693.1    ABLF02039933    ABLF02039935    GGMR01018314    MBY30933.1    GFXV01004993    MBW16798.1    UFQS01000027    UFQT01000027    SSW97702.1    SSX18088.1    GBBI01002713    JAC15999.1    GBGD01002153    JAC86736.1    GECL01001600    JAP04524.1    ACPB03005084    GDKW01002550    JAI54045.1    KQ759843    OAD62608.1    KQ435881    KOX69840.1    CVRI01000004    CRK87523.1    GFTR01005064    JAW11362.1    KQ414601    KOC69705.1    CH479232    EDW36618.1    CH379063    EAL32362.1    CH902622    EDV34157.1    CM000366    EDX18210.1    CH954180    EDV46517.1    OUUW01000003    SPP78697.1    AF070969    AE014298    AY061369    AAD15927.1    AAF48757.1    AAL28917.1    AAN09592.1    CM000162    EDX02634.1    GDQN01002212    JAT88842.1    GBXI01005366    JAD08926.1    GDHF01006184    JAI46130.1    GAKP01005343    JAC53609.1    CH916370    EDW00021.1    CP012528    ALC49393.1    KOX69841.1    GAMC01017158    JAB89397.1    KZ288311    PBC28472.1    CH940655    EDW66062.1    CH933814    EDW05528.2    DS235858    EEB19119.1    PNF19288.1    NNAY01001423    OXU24028.1    LNIX01000001    OXA62109.1    LJIJ01000677    ODM95407.1    CH963925    EDW78398.2    GL452712    EFN76972.1    KRT05936.1    MWRG01002592    PRD32451.1    GL439840    EFN66722.1    KQ434772    KZC03892.1    KQ982080    KYQ60132.1    KQ979533    KYN21109.1    GL732524    EFX89593.1    ADTU01014064    ADTU01014065    ADTU01014066    KQ981319    KYN42718.1    GL888234    EGI64385.1    KQ976404    KYM92074.1    LRGB01003341    KZS03128.1    MG197656    AUG84406.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000053268    UP000192223    UP000019118    + More
UP000030742    UP000008820    UP000027135    UP000069940    UP000249989    UP000030765    UP000075883    UP000076408    UP000075900    UP000075920    UP000075886    UP000075884    UP000000673    UP000069272    UP000075903    UP000076407    UP000007062    UP000075840    UP000235965    UP000075881    UP000075885    UP000007266    UP000007819    UP000015103    UP000075882    UP000075902    UP000053105    UP000183832    UP000053825    UP000008744    UP000001819    UP000192221    UP000007801    UP000000304    UP000008711    UP000268350    UP000000803    UP000002282    UP000001070    UP000092553    UP000075880    UP000005203    UP000242457    UP000008792    UP000009192    UP000009046    UP000215335    UP000198287    UP000094527    UP000007798    UP000002358    UP000008237    UP000000311    UP000076502    UP000075809    UP000078492    UP000000305    UP000005205    UP000078541    UP000007755    UP000078540    UP000076858   

PRIDE

O97111   

Pfam

PF00564   PB1        + More
PF00595   PDZ
PF01066   CDP-OH_P_transf
PF06105   Aph-1

Interpro

IPR001478   PDZ        + More
IPR036034   PDZ_sf       
IPR034876   Par6       
IPR034868   PB1_Par6       
IPR000270   PB1_dom       
IPR000462   CDP-OH_P_trans       
IPR014472   CHOPT       
IPR034874   PAR-6_G       
IPR034872   PAR-6_a       
IPR034873   PAR-6B       
IPR009294   Aph-1       
IPR002048   EF_hand_dom       

SUPFAM

SSF50156   SSF50156       

CDD

cd06403  PB1_Par6

ProteinModelPortal

A0A2W1BVG6   A0A2A4JER0   A0A3S2NRV2   A0A0N0PCK6   A0A194Q6V1   A0A2H1VN75   + More
A0A1W4WTC1   N6T1I2   A0A1Q3G0V9   Q176B0   A0A067R9K8   A0A1B6DMV8   A0A0K8TKQ3   A0A1Y1LHI3   A0A182GHT9   A0A1B6ERF9   U5ERQ4   A0A084WAJ5   A0A182M440   A0A182YFA0   A0A182RIU8   A0A182VT53   A0A182QPF2   A0A182NDD4   A0A2M3Z781   A0A2M4AJI2   W5JSW6   A0A182FTG4   A0A182VJK6   A0A182WUX1   Q7Q8X8   A0A182HYG5   A0A2J7PSG8   A0A182JQQ6   A0A182PUG8   A0A0A9YY36   A0A1L8DMQ2   A0A139WF22   A0A0T6B8A5   V5GR04   J9KAC2   A0A2S2PNE2   A0A2H8TUE7   A0A336K1L5   A0A023F4U2   A0A069DSM6   A0A0V0G9K6   T1IAA9   A0A0P4VHM2   A0A182LPX1   A0A310SIK8   A0A182TK69   A0A0M8ZRU2   A0A1J1HI01   A0A224XS57   A0A0L7RFT8   B4H9W1   Q29JD9   A0A1W4UVQ6   B3MQV2   B4R6G0   B3NWX0   A0A3B0J919   O97111   B4Q2J3   A0A1E1WPC7   A0A0A1XDA8   A0A0K8W5G0   A0A034WFY7   B4JKB8   A0A0M3QZG7   A0A0N0BDA9   W8AT66   A0A182IQJ6   A0A088A2G7   A0A2A3EB00   B4MA03   B4L7V3   E0W0G3   A0A2J7PSG9   A0A232F0U0   A0A226EX36   A0A1D2MQQ1   B4N209   K7J0F4   E2C4Z1   A0A0R3P3L1   A0A2P6L1L1   E2AIN3   A0A154NWG6   A0A151XI98   A0A151J8G3   E9FTS2   A0A158NF92   A0A151JZY1   F4WN43   A0A151I5Z4   A0A164KBQ7   A0A2H5BF90  

PDB

2LC6     E-value=5.48683e-53,     Score=524

KEGG

101743916    K06093 partitioning defective protein 6 | (RefSeq) partitioning defective protein 6

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)
04391    Hippo signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0008654   GO:0016021   GO:0016780   GO:0007163   GO:0060341   GO:0017048   GO:0005634   GO:0016324   GO:0007098   GO:0005938   GO:0005080   GO:0016485   GO:0043085   GO:0097482   GO:0010592   GO:0043195   GO:0051491   GO:0006469   GO:0007430   GO:0007416   GO:0007298   GO:0045179   GO:0045200   GO:0060446   GO:0001738   GO:0035003   GO:0055059   GO:0016332   GO:0005886   GO:0045186   GO:0045176   GO:0045197   GO:0045196   GO:0005509   GO:0005515   GO:0005739   GO:0006508   GO:0008234   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR14102:SF11   PTHR10414   PTHR14102:SF3   PTHR14102:SF9   PTHR14102:SF4  

Length:

319

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00143

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09645

outside

1  -  319

 

 

Pi

147.116356

Theta

136.742709

Tajima's D

0.120258

CLR

0.675176

CSRT

0.399630018499075

Interpretation

Uncertain